Wall clock time and date at job start Fri Apr 10 2020 17:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38175 * 119.54974 * 2 1 4 4 C 1.39798 * 118.99602 * 180.22814 * 3 2 1 5 5 C 1.48152 * 120.91818 * 179.75180 * 4 3 2 6 6 O 1.21512 * 120.00128 * 359.72241 * 5 4 3 7 7 N 1.34779 * 119.99944 * 179.72180 * 5 4 3 8 8 C 1.46492 * 120.00542 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.88407 * 37.41881 * 8 7 5 10 10 C 1.54914 * 111.00284 * 273.54715 * 8 7 5 11 11 N 1.47420 * 104.83159 * 204.91262 * 10 8 7 12 12 C 1.36945 * 125.64792 * 204.08975 * 11 10 8 13 13 H 1.07997 * 119.99756 * 180.02562 * 12 11 10 14 14 C 1.38805 * 119.99878 * 0.02562 * 12 11 10 15 15 N 1.31624 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 300.00154 * 16 14 12 19 19 H 1.48498 * 109.47018 * 60.00200 * 16 14 12 20 20 C 1.47020 * 108.70626 * 24.35323 * 11 10 8 21 21 C 1.54337 * 107.26210 * 358.58837 * 20 11 10 22 22 H 1.09000 * 110.51945 * 96.45260 * 21 20 11 23 23 C 1.53002 * 110.99773 * 219.60002 * 21 20 11 24 24 C 1.39836 * 118.15786 * 359.48221 * 4 3 2 25 25 C 1.38123 * 118.99832 * 0.27202 * 24 4 3 26 26 N 1.31792 * 119.55272 * 179.70241 * 2 1 3 27 27 H 1.08996 * 109.47229 * 270.29987 * 1 2 3 28 28 H 1.09005 * 109.47057 * 30.30371 * 1 2 3 29 29 H 1.09006 * 109.46859 * 150.29510 * 1 2 3 30 30 H 1.08003 * 120.50195 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99907 * 359.97438 * 7 5 4 32 32 H 1.08999 * 110.37083 * 86.07223 * 10 8 7 33 33 H 1.08998 * 110.45606 * 323.79857 * 10 8 7 34 34 H 0.97001 * 119.99885 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.88406 * 118.12749 * 20 11 10 36 36 H 1.09001 * 109.88743 * 239.29401 * 20 11 10 37 37 H 1.09000 * 109.47012 * 173.78008 * 23 21 20 38 38 H 1.09000 * 109.47235 * 293.77429 * 23 21 20 39 39 H 1.08999 * 109.47449 * 53.78300 * 23 21 20 40 40 H 1.07998 * 120.50209 * 180.25564 * 24 4 3 41 41 H 1.08004 * 119.54870 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5864 1.1885 -0.0049 5 6 4.3598 2.4521 -0.0106 6 8 3.7795 3.5197 -0.0162 7 7 5.7072 2.4175 -0.0095 8 6 6.4721 3.6668 -0.0146 9 1 5.9848 4.4233 0.6005 10 6 6.6866 4.1807 -1.4602 11 7 7.9041 5.0090 -1.3895 12 6 8.2327 6.0200 -2.2527 13 1 9.1520 6.5698 -2.1153 14 6 7.3843 6.3381 -3.3042 15 7 6.2636 5.6684 -3.4714 16 14 7.8322 7.7178 -4.4812 17 1 6.7692 7.8565 -5.5088 18 1 7.9608 8.9901 -3.7265 19 1 9.1230 7.4030 -5.1445 20 6 8.7100 4.5656 -0.2427 21 6 7.9326 3.4267 0.4506 22 1 8.2915 2.4559 0.1088 23 6 8.0408 3.5365 1.9728 24 6 4.2343 -0.0506 0.0016 25 6 3.4741 -1.2038 0.0067 26 7 2.1570 -1.1464 0.0060 27 1 -0.3633 0.0054 1.0276 28 1 -0.3633 0.8873 -0.5186 29 1 -0.3633 -0.8927 -0.5093 30 1 1.6493 2.1378 -0.0004 31 1 6.1704 1.5653 -0.0047 32 1 5.8359 4.7830 -1.7790 33 1 6.8357 3.3446 -2.1435 34 1 5.6705 5.8910 -4.2060 35 1 9.6770 4.2001 -0.5883 36 1 8.8512 5.3927 0.4531 37 1 7.3962 2.7905 2.4376 38 1 9.0733 3.3645 2.2770 39 1 7.7300 4.5324 2.2884 40 1 5.3129 -0.1052 0.0023 41 1 3.9653 -2.1656 0.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080646283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:02 Heat of formation + Delta-G solvation = 23.372443 kcal Electronic energy + Delta-G solvation = -22771.771019 eV Core-core repulsion = 19459.232793 eV Total energy + Delta-G solvation = -3312.538226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65494 -39.18527 -37.49225 -34.16506 -33.29532 -32.57846 -32.32509 -30.38806 -27.98855 -27.74354 -25.71541 -24.68951 -23.29308 -22.86022 -20.63990 -20.15927 -19.51497 -17.70763 -17.01121 -16.61030 -15.74643 -15.63162 -15.11106 -15.01293 -14.80161 -14.17240 -13.92546 -13.73657 -13.49227 -13.01184 -12.92203 -12.64349 -12.51773 -12.44513 -12.25488 -11.84203 -11.73406 -11.26020 -11.11032 -10.78247 -10.68127 -10.43861 -10.07909 -10.02397 -9.92892 -9.79195 -9.74205 -9.48933 -9.12645 -8.65491 -8.54792 -6.85025 -5.63364 -3.07562 0.67394 0.93603 3.02397 3.27778 3.41824 3.45648 3.47705 3.78673 4.09744 4.48707 4.54127 4.61351 4.84721 4.90652 5.05431 5.23435 5.27043 5.33818 5.39642 5.40984 5.52492 5.58166 5.70934 5.75786 5.85885 5.90545 5.95531 6.00776 6.10905 6.19848 6.33665 6.43155 6.47345 6.63297 6.71678 6.89946 7.41548 7.60549 7.74269 7.77403 7.90055 8.36229 8.44116 9.21017 9.82451 10.45196 11.39456 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.004049 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.230758 B = 6913.722269 C = 7925.808277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.116 4.116 4 C -0.073 4.073 5 C 0.552 3.448 6 O -0.520 6.520 7 N -0.704 5.704 8 C 0.119 3.881 9 H 0.092 0.908 10 C 0.149 3.851 11 N -0.603 5.603 12 C -0.229 4.229 13 H 0.079 0.921 14 C -0.009 4.009 15 N -0.918 5.918 16 Si 0.915 3.085 17 H -0.290 1.290 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.141 3.859 21 C -0.111 4.111 22 H 0.073 0.927 23 C -0.138 4.138 24 C -0.151 4.151 25 C 0.099 3.901 26 N -0.476 5.476 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.394 0.606 32 H 0.113 0.887 33 H 0.013 0.987 34 H 0.254 0.746 35 H 0.024 0.976 36 H 0.028 0.972 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.139 0.861 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.012 -13.641 9.911 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.137 4.137 4 C -0.084 4.084 5 C 0.337 3.663 6 O -0.396 6.396 7 N -0.355 5.355 8 C 0.015 3.985 9 H 0.110 0.890 10 C 0.023 3.977 11 N -0.329 5.329 12 C -0.357 4.357 13 H 0.097 0.903 14 C -0.205 4.205 15 N -0.566 5.566 16 Si 0.746 3.254 17 H -0.215 1.215 18 H -0.211 1.211 19 H -0.212 1.212 20 C 0.015 3.985 21 C -0.131 4.131 22 H 0.092 0.908 23 C -0.195 4.195 24 C -0.172 4.172 25 C -0.058 4.058 26 N -0.186 5.186 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.166 0.834 31 H 0.228 0.772 32 H 0.131 0.869 33 H 0.031 0.969 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.156 0.844 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.969 -13.480 9.712 17.654 hybrid contribution 1.198 0.918 -0.723 1.673 sum -4.771 -12.562 8.989 16.167 Atomic orbital electron populations 1.20729 0.88365 1.03758 1.03220 1.21298 0.97284 0.87838 0.95177 1.22159 0.93430 1.00134 0.97959 1.20540 0.94585 0.93859 0.99436 1.18092 0.82508 0.88206 0.77486 1.90816 1.69664 1.30553 1.48525 1.45786 1.05555 1.09987 1.74127 1.22759 0.89485 0.84596 1.01703 0.89010 1.22235 0.92873 0.94138 0.88484 1.44383 1.20144 1.38316 1.30065 1.19018 1.04263 1.07907 1.04504 0.90347 1.24823 0.96986 0.99716 0.98929 1.69790 1.12116 1.42262 1.32423 0.86144 0.77187 0.81640 0.80456 1.21543 1.21065 1.21208 1.21338 0.93823 0.93405 0.89920 1.22429 0.95551 0.99826 0.95261 0.90825 1.21747 1.01086 1.01845 0.94856 1.22334 1.01543 0.92688 1.00588 1.22679 0.89195 0.98322 0.95585 1.67377 1.10290 1.29512 1.11457 0.90275 0.90342 0.90343 0.83408 0.77167 0.86896 0.96901 0.93568 0.95805 0.95400 0.93107 0.92761 0.92388 0.84366 0.82197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 36.01 0.37 -0.51 16 2 C 0.12 1.43 6.78 -82.63 -0.56 0.87 16 3 C -0.12 -1.53 9.31 -39.02 -0.36 -1.90 16 4 C -0.07 -1.02 5.91 -104.64 -0.62 -1.63 16 5 C 0.55 9.50 7.80 -12.19 -0.10 9.41 16 6 O -0.52 -11.15 16.19 5.36 0.09 -11.06 16 7 N -0.70 -11.13 5.19 -52.58 -0.27 -11.41 16 8 C 0.12 2.29 2.76 -65.79 -0.18 2.11 16 9 H 0.09 1.94 7.64 -51.93 -0.40 1.54 16 10 C 0.15 3.69 5.58 -2.53 -0.01 3.67 16 11 N -0.60 -15.54 3.39 -170.07 -0.58 -16.12 16 12 C -0.23 -6.44 10.27 -15.06 -0.15 -6.60 16 13 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 14 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 15 N -0.92 -27.58 10.09 55.49 0.56 -27.02 16 16 Si 0.92 22.38 29.55 -169.99 -5.02 17.36 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.14 2.88 6.85 -3.06 -0.02 2.86 16 21 C -0.11 -1.82 3.15 -88.78 -0.28 -2.10 16 22 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 23 C -0.14 -1.82 9.17 37.16 0.34 -1.48 16 24 C -0.15 -1.64 9.62 -39.03 -0.38 -2.01 16 25 C 0.10 1.02 11.17 -17.59 -0.20 0.83 16 26 N -0.48 -5.74 10.25 -9.52 -0.10 -5.84 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.15 1.93 7.74 -52.48 -0.41 1.52 16 31 H 0.39 4.83 6.66 -40.82 -0.27 4.56 16 32 H 0.11 3.31 5.87 -51.93 -0.30 3.00 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.03 0.56 7.78 -51.93 -0.40 0.16 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.14 1.12 6.54 -52.49 -0.34 0.78 16 41 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -34.06 339.44 -8.34 -42.40 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.89 Total: 3.40 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -2.25 Total: 3.17 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.39 Total: -60.38 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.06 -8.34 -42.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080646283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.774 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds