Wall clock time and date at job start Fri Apr 10 2020 17:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38175 * 119.54974 * 2 1 4 4 C 1.39798 * 118.99602 * 180.22814 * 3 2 1 5 5 C 1.48152 * 120.91818 * 179.75180 * 4 3 2 6 6 O 1.21512 * 120.00128 * 359.72241 * 5 4 3 7 7 N 1.34779 * 119.99944 * 179.72180 * 5 4 3 8 8 C 1.46492 * 120.00542 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.88407 * 37.41881 * 8 7 5 10 10 C 1.54914 * 111.00284 * 273.54715 * 8 7 5 11 11 N 1.47420 * 104.83159 * 204.91262 * 10 8 7 12 12 C 1.36945 * 125.64792 * 204.08975 * 11 10 8 13 13 H 1.07997 * 119.99756 * 180.02562 * 12 11 10 14 14 C 1.38805 * 119.99878 * 0.02562 * 12 11 10 15 15 N 1.31624 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 300.00154 * 16 14 12 19 19 H 1.48498 * 109.47018 * 60.00200 * 16 14 12 20 20 C 1.47020 * 108.70626 * 24.35323 * 11 10 8 21 21 C 1.54337 * 107.26210 * 358.58837 * 20 11 10 22 22 H 1.09000 * 110.51945 * 96.45260 * 21 20 11 23 23 C 1.53002 * 110.99773 * 219.60002 * 21 20 11 24 24 C 1.39836 * 118.15786 * 359.48221 * 4 3 2 25 25 C 1.38123 * 118.99832 * 0.27202 * 24 4 3 26 26 N 1.31792 * 119.55272 * 179.70241 * 2 1 3 27 27 H 1.08996 * 109.47229 * 270.29987 * 1 2 3 28 28 H 1.09005 * 109.47057 * 30.30371 * 1 2 3 29 29 H 1.09006 * 109.46859 * 150.29510 * 1 2 3 30 30 H 1.08003 * 120.50195 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99907 * 359.97438 * 7 5 4 32 32 H 1.08999 * 110.37083 * 86.07223 * 10 8 7 33 33 H 1.08998 * 110.45606 * 323.79857 * 10 8 7 34 34 H 0.97001 * 119.99885 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.88406 * 118.12749 * 20 11 10 36 36 H 1.09001 * 109.88743 * 239.29401 * 20 11 10 37 37 H 1.09000 * 109.47012 * 173.78008 * 23 21 20 38 38 H 1.09000 * 109.47235 * 293.77429 * 23 21 20 39 39 H 1.08999 * 109.47449 * 53.78300 * 23 21 20 40 40 H 1.07998 * 120.50209 * 180.25564 * 24 4 3 41 41 H 1.08004 * 119.54870 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2020 0.0000 4 6 3.5864 1.1885 -0.0049 5 6 4.3598 2.4521 -0.0106 6 8 3.7795 3.5197 -0.0162 7 7 5.7072 2.4175 -0.0095 8 6 6.4721 3.6668 -0.0146 9 1 5.9848 4.4233 0.6005 10 6 6.6866 4.1807 -1.4602 11 7 7.9041 5.0090 -1.3895 12 6 8.2327 6.0200 -2.2527 13 1 9.1520 6.5698 -2.1153 14 6 7.3843 6.3381 -3.3042 15 7 6.2636 5.6684 -3.4714 16 14 7.8322 7.7178 -4.4812 17 1 6.7692 7.8565 -5.5088 18 1 7.9608 8.9901 -3.7265 19 1 9.1230 7.4030 -5.1445 20 6 8.7100 4.5656 -0.2427 21 6 7.9326 3.4267 0.4506 22 1 8.2915 2.4559 0.1088 23 6 8.0408 3.5365 1.9728 24 6 4.2343 -0.0506 0.0016 25 6 3.4741 -1.2038 0.0067 26 7 2.1570 -1.1464 0.0060 27 1 -0.3633 0.0054 1.0276 28 1 -0.3633 0.8873 -0.5186 29 1 -0.3633 -0.8927 -0.5093 30 1 1.6493 2.1378 -0.0004 31 1 6.1704 1.5653 -0.0047 32 1 5.8359 4.7830 -1.7790 33 1 6.8357 3.3446 -2.1435 34 1 5.6705 5.8910 -4.2060 35 1 9.6770 4.2001 -0.5883 36 1 8.8512 5.3927 0.4531 37 1 7.3962 2.7905 2.4376 38 1 9.0733 3.3645 2.2770 39 1 7.7300 4.5324 2.2884 40 1 5.3129 -0.1052 0.0023 41 1 3.9653 -2.1656 0.0113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080646283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:01 Heat of formation + Delta-G solvation = -0.326774 kcal Electronic energy + Delta-G solvation = -22772.798694 eV Core-core repulsion = 19459.232793 eV Total energy + Delta-G solvation = -3313.565901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73668 -40.50089 -39.08642 -35.79978 -34.69001 -33.77013 -33.36993 -32.17541 -29.64182 -28.58144 -27.45918 -26.05571 -24.76562 -23.80239 -22.29164 -21.66841 -20.91679 -18.98715 -18.80960 -17.88905 -17.08763 -16.77661 -16.64015 -16.23047 -16.13095 -15.62551 -15.24527 -15.11413 -14.61711 -14.43694 -14.30664 -14.12071 -13.91931 -13.40746 -13.31936 -13.11874 -13.06239 -12.82986 -12.68357 -12.59619 -12.27738 -12.07674 -11.85037 -11.70321 -11.43045 -11.36373 -10.97659 -10.77862 -10.54454 -10.09972 -9.97379 -8.92731 -7.79214 -5.26233 -0.35729 0.05973 1.43532 1.47774 1.54248 1.78473 1.96573 2.48000 2.79554 3.30443 3.33081 3.41927 3.62253 3.71660 3.81357 3.93992 3.98341 4.03103 4.06834 4.41257 4.45459 4.58996 4.61092 4.63609 4.72642 4.78175 4.88224 4.94759 5.02075 5.04189 5.08862 5.14562 5.17547 5.24946 5.43264 5.48128 5.57193 5.63555 5.77798 6.25793 6.45875 6.89415 7.04132 7.12767 7.74691 8.36766 9.21160 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.004049 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.230758 B = 6913.722269 C = 7925.808277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.118 3.882 3 C -0.134 4.134 4 C -0.093 4.093 5 C 0.550 3.450 6 O -0.574 6.574 7 N -0.689 5.689 8 C 0.136 3.864 9 H 0.068 0.932 10 C 0.156 3.844 11 N -0.627 5.627 12 C -0.242 4.242 13 H 0.087 0.913 14 C -0.070 4.070 15 N -0.950 5.950 16 Si 0.982 3.018 17 H -0.297 1.297 18 H -0.275 1.275 19 H -0.273 1.273 20 C 0.132 3.868 21 C -0.092 4.092 22 H 0.101 0.899 23 C -0.130 4.130 24 C -0.140 4.140 25 C 0.104 3.896 26 N -0.487 5.487 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.415 0.585 32 H 0.061 0.939 33 H -0.009 1.009 34 H 0.244 0.756 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.170 0.830 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.562 -15.952 11.215 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.019 4.019 3 C -0.155 4.155 4 C -0.104 4.104 5 C 0.337 3.663 6 O -0.453 6.453 7 N -0.340 5.340 8 C 0.030 3.970 9 H 0.086 0.914 10 C 0.030 3.970 11 N -0.353 5.353 12 C -0.371 4.371 13 H 0.105 0.895 14 C -0.262 4.262 15 N -0.600 5.600 16 Si 0.810 3.190 17 H -0.223 1.223 18 H -0.201 1.201 19 H -0.199 1.199 20 C 0.007 3.993 21 C -0.111 4.111 22 H 0.119 0.881 23 C -0.188 4.188 24 C -0.161 4.161 25 C -0.053 4.053 26 N -0.198 5.198 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.155 0.845 31 H 0.253 0.747 32 H 0.079 0.921 33 H 0.009 0.991 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.187 0.813 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.475 -15.837 11.054 19.825 hybrid contribution 0.764 1.588 -1.114 2.085 sum -3.711 -14.250 9.939 17.765 Atomic orbital electron populations 1.20812 0.86402 1.04424 1.04319 1.21661 0.98668 0.87147 0.94401 1.22213 0.93540 1.00548 0.99189 1.20357 0.94673 0.93340 1.02043 1.18685 0.82789 0.88834 0.75993 1.90787 1.70699 1.32894 1.50957 1.45539 1.05196 1.09847 1.73438 1.22231 0.91799 0.85518 0.97461 0.91391 1.21876 0.91015 0.92542 0.91615 1.44688 1.21367 1.38120 1.31144 1.19478 1.04356 1.08427 1.04821 0.89506 1.25726 0.97067 1.02398 1.01020 1.70119 1.13208 1.43988 1.32676 0.85091 0.76935 0.78879 0.78082 1.22286 1.20136 1.19879 1.21620 0.94172 0.94977 0.88503 1.22383 0.91914 0.99492 0.97340 0.88096 1.21708 1.03270 1.01934 0.91860 1.22637 1.03130 0.91318 0.98977 1.23353 0.88673 0.99661 0.93600 1.67491 1.11355 1.29335 1.11630 0.88870 0.89716 0.89614 0.84543 0.74656 0.92100 0.99128 0.94617 0.94685 0.95047 0.91067 0.90113 0.93591 0.81300 0.78289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.16 71.24 0.72 -0.91 16 2 C 0.12 2.67 6.78 42.55 0.29 2.96 16 3 C -0.13 -3.60 9.31 22.63 0.21 -3.39 16 4 C -0.09 -2.56 5.91 -19.88 -0.12 -2.67 16 5 C 0.55 19.39 7.80 86.88 0.68 20.06 16 6 O -0.57 -26.22 16.19 -3.75 -0.06 -26.28 16 7 N -0.69 -21.37 5.19 -438.55 -2.28 -23.65 16 8 C 0.14 5.26 2.76 46.38 0.13 5.38 16 9 H 0.07 2.98 7.64 -2.39 -0.02 2.96 16 10 C 0.16 8.07 5.58 86.86 0.48 8.56 16 11 N -0.63 -32.96 3.39 -691.97 -2.35 -35.31 16 12 C -0.24 -13.89 10.27 84.03 0.86 -13.02 16 13 H 0.09 4.69 7.83 -2.91 -0.02 4.66 16 14 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 15 N -0.95 -59.98 10.09 21.65 0.22 -59.76 16 16 Si 0.98 47.05 29.55 68.60 2.03 49.07 16 17 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 C 0.13 5.24 6.85 86.73 0.59 5.84 16 21 C -0.09 -2.80 3.15 -9.60 -0.03 -2.83 16 22 H 0.10 2.57 8.00 -2.39 -0.02 2.55 16 23 C -0.13 -2.99 9.17 71.98 0.66 -2.33 16 24 C -0.14 -2.67 9.62 22.63 0.22 -2.45 16 25 C 0.10 1.80 11.17 84.67 0.95 2.74 16 26 N -0.49 -10.66 10.25 -184.04 -1.89 -12.54 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.23 8.08 -2.38 -0.02 1.21 16 29 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.14 3.85 7.74 -2.91 -0.02 3.83 16 31 H 0.41 9.11 6.66 -92.71 -0.62 8.49 16 32 H 0.06 3.82 5.87 -2.39 -0.01 3.80 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.24 15.13 8.31 -92.71 -0.77 14.35 16 35 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.03 1.23 7.78 -2.39 -0.02 1.21 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.04 1.18 8.08 -2.39 -0.02 1.16 16 40 H 0.17 2.03 6.54 -2.91 -0.02 2.01 16 41 H 0.20 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -79.66 339.44 2.21 -77.45 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.42 Total: 16.72 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.11 Total: 14.30 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -6.29 Total: -131.26 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.06 Total: -26.28 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -79.66 2.21 -77.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080646283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.124 kcal (2) G-P(sol) polarization free energy of solvation -79.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds