Wall clock time and date at job start Fri Apr 10 2020 17:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34486 * 126.83508 * 2 1 4 4 N 1.36451 * 108.85503 * 180.02562 * 3 2 1 5 5 H 0.97006 * 124.84942 * 180.02562 * 4 3 2 6 6 C 1.34657 * 110.30138 * 359.97438 * 4 3 2 7 7 C 1.36769 * 108.39393 * 0.02562 * 6 4 3 8 8 C 1.47261 * 126.94198 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00079 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00195 * 0.03298 * 8 7 6 11 11 C 1.47290 * 136.54375 * 359.97438 * 10 8 7 12 12 C 1.54077 * 87.60778 * 151.35074 * 11 10 8 13 13 H 1.09000 * 115.04080 * 141.62845 * 12 11 10 14 14 C 1.53058 * 111.39729 * 273.97521 * 12 11 10 15 15 C 1.52008 * 109.68892 * 142.51268 * 14 12 11 16 16 N 1.46532 * 108.11243 * 301.56986 * 15 14 12 17 17 C 1.36936 * 119.73866 * 236.29868 * 16 15 14 18 18 H 1.08004 * 120.00175 * 25.18412 * 17 16 15 19 19 C 1.38808 * 119.99926 * 205.18660 * 17 16 15 20 20 N 1.31615 * 120.00180 * 14.50518 * 19 17 16 21 21 Si 1.86806 * 120.00090 * 194.50109 * 19 17 16 22 22 H 1.48499 * 109.46788 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47016 * 120.00113 * 21 19 17 24 24 H 1.48502 * 109.47307 * 240.00253 * 21 19 17 25 25 C 1.45701 * 120.52583 * 56.31227 * 16 15 14 26 26 C 1.46470 * 136.54896 * 179.62510 * 10 8 7 27 27 H 1.08998 * 111.43909 * 96.39455 * 26 10 8 28 28 H 1.09003 * 109.47336 * 269.99996 * 1 2 3 29 29 H 1.08999 * 109.47148 * 29.99563 * 1 2 3 30 30 H 1.09001 * 109.47893 * 149.99660 * 1 2 3 31 31 H 1.07995 * 125.57450 * 0.02562 * 3 2 1 32 32 H 1.08001 * 125.80498 * 180.26362 * 6 4 3 33 33 H 1.08999 * 113.53170 * 266.03842 * 11 10 8 34 34 H 1.09005 * 113.52592 * 36.67107 * 11 10 8 35 35 H 1.08996 * 109.51938 * 262.32452 * 14 12 11 36 36 H 1.09007 * 109.51055 * 22.48388 * 14 12 11 37 37 H 1.09001 * 109.87710 * 181.85834 * 15 14 12 38 38 H 1.09001 * 109.70884 * 61.17695 * 15 14 12 39 39 H 0.97000 * 120.00008 * 180.02562 * 20 19 17 40 40 H 1.08999 * 108.79000 * 199.10200 * 25 16 15 41 41 H 1.09004 * 108.69379 * 80.82166 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3840 1.2413 -0.0003 6 6 3.6656 -0.6903 -0.0004 7 6 2.3863 -1.1741 -0.0003 8 6 1.9748 -2.5880 -0.0006 9 8 0.7935 -2.8776 -0.0009 10 7 2.9072 -3.5612 -0.0004 11 6 4.3783 -3.6325 -0.0003 12 6 4.2487 -4.9786 0.7380 13 1 4.9670 -5.7411 0.4367 14 6 4.1363 -4.7770 2.2511 15 6 3.1618 -5.7890 2.8315 16 7 1.8666 -5.6045 2.1715 17 6 0.7498 -5.3565 2.9242 18 1 0.8458 -4.9027 3.8996 19 6 -0.5055 -5.6883 2.4336 20 7 -0.6156 -6.4876 1.3938 21 14 -2.0389 -5.0005 3.2493 22 1 -1.6465 -4.1346 4.3902 23 1 -2.8084 -4.2013 2.2624 24 1 -2.8806 -6.1194 3.7444 25 6 1.7574 -5.6833 0.7207 26 6 2.9154 -5.0259 0.0061 27 1 3.0262 -5.4281 -1.0009 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3635 -0.8899 -0.5139 31 1 1.9868 2.1058 0.0004 32 1 4.5664 -1.2861 0.0033 33 1 4.8097 -3.7227 -0.9972 34 1 4.8517 -2.8527 0.5964 35 1 5.1145 -4.9173 2.7109 36 1 3.7769 -3.7690 2.4584 37 1 3.0543 -5.6269 3.9041 38 1 3.5276 -6.7991 2.6474 39 1 -1.4929 -6.7192 1.0508 40 1 0.8323 -5.1969 0.4114 41 1 1.7158 -6.7330 0.4300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084829086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:17 Heat of formation + Delta-G solvation = 85.871515 kcal Electronic energy + Delta-G solvation = -24223.605716 eV Core-core repulsion = 20913.777653 eV Total energy + Delta-G solvation = -3309.828063 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08118 -40.16012 -37.11838 -35.12247 -32.23251 -32.07138 -30.41032 -29.98171 -28.08261 -26.88564 -26.31339 -23.80995 -23.16425 -22.02276 -20.80798 -19.83160 -18.76887 -18.16476 -17.45614 -16.40323 -15.64047 -15.49947 -14.92168 -14.46182 -14.07581 -13.87590 -13.56639 -13.25678 -13.15491 -13.02053 -12.71847 -12.43869 -12.39885 -12.27646 -12.07639 -11.77140 -11.38223 -11.15809 -10.92342 -10.58006 -10.52324 -10.36845 -10.06725 -9.75539 -9.67172 -9.43707 -8.77602 -8.42489 -8.18830 -8.14439 -7.89731 -6.48298 -5.54849 -2.96356 2.06360 2.59205 3.25472 3.53251 3.55276 3.63456 3.64558 4.17058 4.69998 4.75851 4.91687 5.01303 5.19332 5.30296 5.47420 5.51593 5.57558 5.62991 5.68499 5.71269 5.82479 5.97659 6.03558 6.14210 6.21766 6.22814 6.38142 6.46124 6.50091 6.56865 6.63967 6.70198 6.87491 7.03440 7.05515 7.09626 7.51875 7.63106 7.89676 8.06323 8.56030 8.68924 9.10222 9.46749 10.11242 10.58388 11.53373 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.007301 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.764068 B = 3833.938263 C = 5150.781444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.108 4.108 3 C -0.034 4.034 4 N -0.555 5.555 5 H 0.413 0.587 6 C 0.031 3.969 7 C -0.206 4.206 8 C 0.611 3.389 9 O -0.516 6.516 10 N -0.631 5.631 11 C 0.092 3.908 12 C -0.113 4.113 13 H 0.090 0.910 14 C -0.113 4.113 15 C 0.148 3.852 16 N -0.584 5.584 17 C -0.249 4.249 18 H 0.061 0.939 19 C 0.011 3.989 20 N -0.904 5.904 21 Si 0.900 3.100 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.294 1.294 25 C 0.167 3.833 26 C 0.120 3.880 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.165 0.835 32 H 0.171 0.829 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.250 0.750 40 H 0.105 0.895 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.954 12.281 -4.654 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.161 4.161 4 N -0.150 5.150 5 H 0.249 0.751 6 C -0.104 4.104 7 C -0.216 4.216 8 C 0.401 3.599 9 O -0.391 6.391 10 N -0.368 5.368 11 C -0.032 4.032 12 C -0.132 4.132 13 H 0.108 0.892 14 C -0.153 4.153 15 C 0.021 3.979 16 N -0.307 5.307 17 C -0.378 4.378 18 H 0.079 0.921 19 C -0.187 4.187 20 N -0.549 5.549 21 Si 0.731 3.269 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.221 1.221 25 C 0.040 3.960 26 C 0.016 3.984 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.183 0.817 32 H 0.188 0.812 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.061 0.939 40 H 0.123 0.877 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 13.027 12.348 -4.738 18.564 hybrid contribution -0.231 0.736 0.233 0.806 sum 12.796 13.084 -4.505 18.847 Atomic orbital electron populations 1.20196 0.89389 1.02357 1.02175 1.20595 0.95689 0.90417 1.04776 1.21485 0.82548 0.98939 1.13147 1.41445 1.08011 1.06655 1.58916 0.75140 1.22205 0.98930 0.83528 1.05727 1.20562 0.92439 0.93099 1.15519 1.16736 0.84270 0.82469 0.76391 1.90828 1.16173 1.82721 1.49383 1.49262 1.05972 1.07429 1.74092 1.23376 0.82710 0.97685 0.99414 1.22705 0.97725 0.96243 0.96558 0.89185 1.21619 0.99167 1.01779 0.92713 1.20516 0.86863 0.94593 0.95908 1.43461 1.03112 1.83030 1.01070 1.19114 0.84667 1.33383 1.00683 0.92102 1.24891 0.97830 0.97622 0.98360 1.70015 1.22316 1.35971 1.26629 0.86258 0.83777 0.78273 0.78624 1.20570 1.21443 1.22091 1.20216 0.95793 0.97070 0.82882 1.22544 0.97298 0.80158 0.98370 0.91239 0.91730 0.92769 0.90101 0.81740 0.81186 0.90690 0.91367 0.92919 0.92022 0.92691 0.96437 0.93949 0.87708 0.95455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.98 36.00 0.36 -1.00 16 2 C -0.11 -1.75 6.35 -102.54 -0.65 -2.40 16 3 C -0.03 -0.41 11.82 -16.82 -0.20 -0.61 16 4 N -0.56 -5.64 5.90 -12.85 -0.08 -5.72 16 5 H 0.41 2.46 8.96 -40.82 -0.37 2.09 16 6 C 0.03 0.40 11.11 -16.84 -0.19 0.21 16 7 C -0.21 -3.63 6.29 -103.35 -0.65 -4.28 16 8 C 0.61 13.26 7.99 -12.59 -0.10 13.16 16 9 O -0.52 -13.71 14.57 5.25 0.08 -13.63 16 10 N -0.63 -12.05 3.34 -189.22 -0.63 -12.68 16 11 C 0.09 1.24 6.54 -11.55 -0.08 1.17 16 12 C -0.11 -1.76 4.58 -90.45 -0.41 -2.17 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 14 C -0.11 -1.94 5.61 -27.21 -0.15 -2.09 16 15 C 0.15 3.14 6.44 -4.53 -0.03 3.12 16 16 N -0.58 -15.40 3.02 -175.58 -0.53 -15.93 16 17 C -0.25 -7.35 9.53 -15.06 -0.14 -7.50 16 18 H 0.06 1.79 7.83 -52.48 -0.41 1.38 16 19 C 0.01 0.34 4.94 -17.43 -0.09 0.25 16 20 N -0.90 -28.21 10.94 55.49 0.61 -27.60 16 21 Si 0.90 24.07 29.58 -169.99 -5.03 19.04 16 22 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 24 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 25 C 0.17 4.28 4.59 -5.42 -0.02 4.26 16 26 C 0.12 2.39 4.03 -77.82 -0.31 2.07 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.55 6.85 -51.93 -0.36 1.19 16 31 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.17 1.74 5.18 -52.49 -0.27 1.47 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.79 6.05 -51.93 -0.31 0.47 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.17 7.68 -51.93 -0.40 0.78 16 37 H 0.05 1.16 7.87 -51.93 -0.41 0.75 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.10 3.18 4.95 -51.93 -0.26 2.92 16 41 H 0.03 0.75 8.00 -51.93 -0.42 0.34 16 LS Contribution 325.20 15.07 4.90 4.90 Total: -1.00 -37.29 325.20 -9.07 -46.36 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.72 Total: 1.07 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -2.67 Total: 4.19 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.63 Total: -61.93 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.03 Total: 19.04 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.29 -9.07 -46.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084829086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.228 kcal (2) G-P(sol) polarization free energy of solvation -37.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds