Wall clock time and date at job start Fri Apr 10 2020 17:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34486 * 126.83508 * 2 1 4 4 N 1.36451 * 108.85503 * 180.02562 * 3 2 1 5 5 H 0.97006 * 124.84942 * 180.02562 * 4 3 2 6 6 C 1.34657 * 110.30138 * 359.97438 * 4 3 2 7 7 C 1.36769 * 108.39393 * 0.02562 * 6 4 3 8 8 C 1.47261 * 126.94198 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00079 * 180.02562 * 8 7 6 10 10 N 1.34774 * 120.00195 * 0.03298 * 8 7 6 11 11 C 1.47290 * 136.54375 * 359.97438 * 10 8 7 12 12 C 1.54077 * 87.60778 * 151.35074 * 11 10 8 13 13 H 1.09000 * 115.04080 * 141.62845 * 12 11 10 14 14 C 1.53058 * 111.39729 * 273.97521 * 12 11 10 15 15 C 1.52008 * 109.68892 * 142.51268 * 14 12 11 16 16 N 1.46532 * 108.11243 * 301.56986 * 15 14 12 17 17 C 1.36936 * 119.73866 * 236.29868 * 16 15 14 18 18 H 1.08004 * 120.00175 * 25.18412 * 17 16 15 19 19 C 1.38808 * 119.99926 * 205.18660 * 17 16 15 20 20 N 1.31615 * 120.00180 * 14.50518 * 19 17 16 21 21 Si 1.86806 * 120.00090 * 194.50109 * 19 17 16 22 22 H 1.48499 * 109.46788 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47016 * 120.00113 * 21 19 17 24 24 H 1.48502 * 109.47307 * 240.00253 * 21 19 17 25 25 C 1.45701 * 120.52583 * 56.31227 * 16 15 14 26 26 C 1.46470 * 136.54896 * 179.62510 * 10 8 7 27 27 H 1.08998 * 111.43909 * 96.39455 * 26 10 8 28 28 H 1.09003 * 109.47336 * 269.99996 * 1 2 3 29 29 H 1.08999 * 109.47148 * 29.99563 * 1 2 3 30 30 H 1.09001 * 109.47893 * 149.99660 * 1 2 3 31 31 H 1.07995 * 125.57450 * 0.02562 * 3 2 1 32 32 H 1.08001 * 125.80498 * 180.26362 * 6 4 3 33 33 H 1.08999 * 113.53170 * 266.03842 * 11 10 8 34 34 H 1.09005 * 113.52592 * 36.67107 * 11 10 8 35 35 H 1.08996 * 109.51938 * 262.32452 * 14 12 11 36 36 H 1.09007 * 109.51055 * 22.48388 * 14 12 11 37 37 H 1.09001 * 109.87710 * 181.85834 * 15 14 12 38 38 H 1.09001 * 109.70884 * 61.17695 * 15 14 12 39 39 H 0.97000 * 120.00008 * 180.02562 * 20 19 17 40 40 H 1.08999 * 108.79000 * 199.10200 * 25 16 15 41 41 H 1.09004 * 108.69379 * 80.82166 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3840 1.2413 -0.0003 6 6 3.6656 -0.6903 -0.0004 7 6 2.3863 -1.1741 -0.0003 8 6 1.9748 -2.5880 -0.0006 9 8 0.7935 -2.8776 -0.0009 10 7 2.9072 -3.5612 -0.0004 11 6 4.3783 -3.6325 -0.0003 12 6 4.2487 -4.9786 0.7380 13 1 4.9670 -5.7411 0.4367 14 6 4.1363 -4.7770 2.2511 15 6 3.1618 -5.7890 2.8315 16 7 1.8666 -5.6045 2.1715 17 6 0.7498 -5.3565 2.9242 18 1 0.8458 -4.9027 3.8996 19 6 -0.5055 -5.6883 2.4336 20 7 -0.6156 -6.4876 1.3938 21 14 -2.0389 -5.0005 3.2493 22 1 -1.6465 -4.1346 4.3902 23 1 -2.8084 -4.2013 2.2624 24 1 -2.8806 -6.1194 3.7444 25 6 1.7574 -5.6833 0.7207 26 6 2.9154 -5.0259 0.0061 27 1 3.0262 -5.4281 -1.0009 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3635 -0.8899 -0.5139 31 1 1.9868 2.1058 0.0004 32 1 4.5664 -1.2861 0.0033 33 1 4.8097 -3.7227 -0.9972 34 1 4.8517 -2.8527 0.5964 35 1 5.1145 -4.9173 2.7109 36 1 3.7769 -3.7690 2.4584 37 1 3.0543 -5.6269 3.9041 38 1 3.5276 -6.7991 2.6474 39 1 -1.4929 -6.7192 1.0508 40 1 0.8323 -5.1969 0.4114 41 1 1.7158 -6.7330 0.4300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084829086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:16 Heat of formation + Delta-G solvation = 58.075612 kcal Electronic energy + Delta-G solvation = -24224.811036 eV Core-core repulsion = 20913.777653 eV Total energy + Delta-G solvation = -3311.033383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.22657 -41.46999 -38.73524 -37.03122 -34.01250 -33.32149 -31.95571 -31.67601 -29.54238 -28.55319 -27.46460 -25.68891 -24.70888 -23.39454 -22.42507 -20.99421 -20.03515 -19.49118 -18.99721 -18.02416 -17.28355 -17.08181 -16.47762 -16.08182 -15.67225 -15.40506 -14.98423 -14.83547 -14.56746 -14.44296 -14.20401 -13.93693 -13.88565 -13.63632 -13.47607 -13.26602 -13.13101 -12.75132 -12.66793 -12.36455 -12.20853 -12.17151 -11.95287 -11.68579 -11.44017 -11.03723 -10.64201 -10.26745 -9.66836 -9.28351 -9.15221 -8.65210 -7.83827 -5.26946 0.91310 1.32554 1.40858 1.45861 1.51721 2.10016 2.48040 2.48702 2.74849 3.31885 3.47778 3.75181 3.83474 3.96070 4.05889 4.24813 4.29887 4.42521 4.51862 4.57302 4.59944 4.70753 4.74216 4.79459 4.84407 4.90433 4.97944 4.99022 5.07795 5.11987 5.21922 5.33124 5.36855 5.49901 5.57457 5.75357 5.86611 5.87911 6.00150 6.41885 6.76898 7.13369 7.21370 7.59434 7.99089 8.36675 9.20390 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.007301 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.764068 B = 3833.938263 C = 5150.781444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.162 4.162 3 C -0.001 4.001 4 N -0.530 5.530 5 H 0.440 0.560 6 C 0.065 3.935 7 C -0.261 4.261 8 C 0.595 3.405 9 O -0.594 6.594 10 N -0.640 5.640 11 C 0.106 3.894 12 C -0.100 4.100 13 H 0.133 0.867 14 C -0.102 4.102 15 C 0.138 3.862 16 N -0.601 5.601 17 C -0.252 4.252 18 H 0.057 0.943 19 C -0.046 4.046 20 N -0.933 5.933 21 Si 0.953 3.047 22 H -0.268 1.268 23 H -0.305 1.305 24 H -0.281 1.281 25 C 0.180 3.820 26 C 0.104 3.896 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.206 0.794 32 H 0.205 0.795 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.027 0.973 39 H 0.243 0.757 40 H 0.049 0.951 41 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.931 14.997 -4.555 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.168 4.168 3 C -0.129 4.129 4 N -0.126 5.126 5 H 0.281 0.719 6 C -0.072 4.072 7 C -0.271 4.271 8 C 0.388 3.612 9 O -0.475 6.475 10 N -0.374 5.374 11 C -0.015 4.015 12 C -0.119 4.119 13 H 0.151 0.849 14 C -0.141 4.141 15 C 0.013 3.987 16 N -0.325 5.325 17 C -0.383 4.383 18 H 0.075 0.925 19 C -0.241 4.241 20 N -0.580 5.580 21 Si 0.783 3.217 22 H -0.192 1.192 23 H -0.232 1.232 24 H -0.208 1.208 25 C 0.053 3.947 26 C -0.001 4.001 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.223 0.777 32 H 0.222 0.778 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 18.131 15.092 -4.614 24.037 hybrid contribution -1.706 -0.103 0.220 1.723 sum 16.425 14.989 -4.395 22.666 Atomic orbital electron populations 1.20049 0.90948 1.01673 1.00827 1.20779 0.95604 0.91932 1.08465 1.21897 0.82388 0.99395 1.09255 1.41467 1.08533 1.06164 1.56452 0.71890 1.22443 0.97879 0.84614 1.02296 1.20460 0.95217 0.91206 1.20237 1.17554 0.83759 0.84571 0.75280 1.90782 1.19472 1.84125 1.53132 1.49425 1.08685 1.06367 1.72968 1.23631 0.79066 0.96988 1.01801 1.22742 0.95034 0.98935 0.95146 0.84930 1.21493 0.99880 0.98705 0.94032 1.20792 0.85576 0.96611 0.95707 1.43699 1.04214 1.83193 1.01371 1.19393 0.86197 1.32049 1.00668 0.92478 1.25591 1.00507 0.98612 0.99402 1.70181 1.22066 1.37623 1.28153 0.85405 0.80807 0.77847 0.77678 1.19239 1.23247 1.20784 1.19807 0.96541 0.95042 0.83278 1.22585 0.97309 0.80999 0.99189 0.89698 0.93521 0.89440 0.94651 0.77701 0.77829 0.86617 0.88216 0.87953 0.94138 0.93207 0.95492 0.94796 0.93279 0.99053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.69 9.98 71.23 0.71 -1.98 16 2 C -0.16 -5.17 6.35 -18.52 -0.12 -5.29 16 3 C 0.00 -0.02 11.82 83.12 0.98 0.96 16 4 N -0.53 -7.90 5.90 -194.56 -1.15 -9.05 16 5 H 0.44 2.25 8.96 -92.70 -0.83 1.42 16 6 C 0.07 1.39 11.11 83.92 0.93 2.32 16 7 C -0.26 -9.04 6.29 -19.04 -0.12 -9.16 16 8 C 0.59 26.89 7.99 86.62 0.69 27.58 16 9 O -0.59 -34.71 14.57 -4.12 -0.06 -34.77 16 10 N -0.64 -23.98 3.34 -870.83 -2.91 -26.88 16 11 C 0.11 2.32 6.54 81.08 0.53 2.85 16 12 C -0.10 -2.68 4.58 -10.68 -0.05 -2.73 16 13 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 14 C -0.10 -3.13 5.61 30.29 0.17 -2.96 16 15 C 0.14 5.77 6.44 86.05 0.55 6.33 16 16 N -0.60 -32.94 3.02 -709.40 -2.14 -35.08 16 17 C -0.25 -15.67 9.53 84.03 0.80 -14.87 16 18 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 19 C -0.05 -2.96 4.94 84.86 0.42 -2.54 16 20 N -0.93 -62.54 10.94 21.65 0.24 -62.30 16 21 Si 0.95 52.44 29.58 68.60 2.03 54.47 16 22 H -0.27 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.30 -17.45 7.11 99.48 0.71 -16.74 16 24 H -0.28 -14.76 7.11 99.48 0.71 -14.05 16 25 C 0.18 9.80 4.59 85.92 0.39 10.20 16 26 C 0.10 4.10 4.03 38.60 0.16 4.25 16 27 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.03 1.51 6.85 -2.39 -0.02 1.49 16 31 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.21 2.79 5.18 -2.91 -0.02 2.78 16 33 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 1.60 6.05 -2.38 -0.01 1.59 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.04 1.42 7.68 -2.38 -0.02 1.41 16 37 H 0.05 2.08 7.87 -2.39 -0.02 2.07 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.24 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.05 3.24 4.95 -2.39 -0.01 3.22 16 41 H -0.01 -0.49 8.00 -2.38 -0.02 -0.51 16 Total: -1.00 -96.11 325.20 2.29 -93.83 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 0.22 Total: 4.81 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 6.05 Total: 14.97 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -5.96 Total: -133.31 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -0.06 Total: -34.77 kcal Atomic # 14 Polarization: 52.44 SS G_CDS: 2.03 Total: 54.47 kcal Total: -96.11 2.29 -93.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084829086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.904 kcal (2) G-P(sol) polarization free energy of solvation -96.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds