Wall clock time and date at job start Fri Apr 10 2020 17:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.64732 * 2 1 4 4 C 1.54327 * 110.86771 * 236.75694 * 2 1 3 5 5 N 1.47029 * 107.26790 * 219.37342 * 4 2 1 6 6 C 1.36939 * 125.64542 * 178.99180 * 5 4 2 7 7 H 1.08001 * 119.99891 * 179.97438 * 6 5 4 8 8 C 1.38809 * 120.00452 * 359.96960 * 6 5 4 9 9 N 1.31623 * 119.99639 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00533 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46723 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47647 * 119.99637 * 10 8 6 13 13 H 1.48501 * 109.46835 * 240.00216 * 10 8 6 14 14 C 1.47418 * 108.70495 * 358.93814 * 5 4 2 15 15 C 1.54915 * 104.83107 * 24.13113 * 14 5 4 16 16 H 1.09002 * 111.00539 * 81.06145 * 15 14 5 17 17 C 1.53001 * 111.03575 * 204.90180 * 15 14 5 18 18 N 1.46501 * 109.46940 * 290.39053 * 17 15 14 19 19 C 1.34776 * 120.00110 * 180.02562 * 18 17 15 20 20 O 1.21555 * 119.99863 * 0.02562 * 19 18 17 21 21 C 1.47835 * 120.00396 * 180.02562 * 19 18 17 22 22 C 1.40022 * 120.56450 * 179.97438 * 21 19 18 23 23 C 1.38354 * 118.29468 * 179.97438 * 22 21 19 24 24 C 1.38358 * 119.29990 * 0.02562 * 23 22 21 25 25 N 1.31927 * 121.07777 * 0.02562 * 24 23 22 26 26 C 1.31693 * 121.88256 * 359.68810 * 25 24 23 27 27 H 1.08997 * 109.46655 * 296.85759 * 1 2 3 28 28 H 1.09001 * 109.47237 * 56.85205 * 1 2 3 29 29 H 1.08994 * 109.47195 * 176.85065 * 1 2 3 30 30 H 1.08993 * 109.88730 * 338.78933 * 4 2 1 31 31 H 1.08996 * 109.88624 * 99.80658 * 4 2 1 32 32 H 0.97001 * 119.99838 * 179.97438 * 9 8 6 33 33 H 1.08995 * 110.37279 * 265.29528 * 14 5 4 34 34 H 1.08997 * 110.36990 * 142.96726 * 14 5 4 35 35 H 1.08998 * 109.47255 * 50.39338 * 17 15 14 36 36 H 1.09002 * 109.46774 * 170.39389 * 17 15 14 37 37 H 0.97001 * 120.00007 * 0.02562 * 18 17 15 38 38 H 1.07999 * 120.85129 * 359.96221 * 22 21 19 39 39 H 1.07989 * 120.35178 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.45561 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.72123 * 180.28740 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0797 -0.7905 -1.2061 5 7 3.2494 -1.5471 -0.7355 6 6 4.0125 -2.3916 -1.4968 7 1 4.8555 -2.9029 -1.0559 8 6 3.7026 -2.5908 -2.8351 9 7 2.6755 -1.9674 -3.3726 10 14 4.7432 -3.7434 -3.8734 11 1 5.8306 -4.3153 -3.0392 12 1 3.8921 -4.8411 -4.3984 13 1 5.3346 -2.9896 -5.0079 14 6 3.4652 -1.2448 0.6911 15 6 2.0790 -0.7935 1.2150 16 1 1.4469 -1.6530 1.4382 17 6 2.2229 0.1108 2.4408 18 7 2.7011 -0.6801 3.5775 19 6 2.9024 -0.0895 4.7722 20 8 2.6866 1.0991 4.9066 21 6 3.3855 -0.8874 5.9192 22 6 3.5991 -0.2858 7.1654 23 6 4.0512 -1.0768 8.2066 24 6 4.2763 -2.4239 7.9852 25 7 4.0672 -2.9634 6.7996 26 6 3.6321 -2.2535 5.7793 27 1 -0.3632 0.4643 0.9168 28 1 -0.3634 0.5619 -0.8604 29 1 -0.3633 -1.0261 -0.0565 30 1 1.3190 -1.4771 -1.5772 31 1 2.3749 -0.1016 -1.9975 32 1 2.4592 -2.1062 -4.3079 33 1 4.1929 -0.4411 0.8028 34 1 3.7993 -2.1365 1.2215 35 1 2.9373 0.9050 2.2245 36 1 1.2551 0.5490 2.6846 37 1 2.8729 -1.6287 3.4703 38 1 3.4157 0.7686 7.3101 39 1 4.2274 -0.6472 9.1815 40 1 4.6296 -3.0436 8.7960 41 1 3.4685 -2.7321 4.8250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092429297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:31 Heat of formation + Delta-G solvation = 18.817691 kcal Electronic energy + Delta-G solvation = -22416.838796 eV Core-core repulsion = 19104.103061 eV Total energy + Delta-G solvation = -3312.735735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79344 -39.22711 -37.96651 -34.83270 -33.06131 -32.80277 -31.82238 -30.74514 -29.21332 -26.12056 -25.44218 -24.40306 -23.77011 -22.65192 -20.92796 -20.03964 -19.34668 -18.22959 -17.10237 -16.75663 -16.67543 -15.64205 -15.37171 -15.18440 -14.73708 -14.33329 -14.03878 -13.76963 -13.60157 -13.37595 -13.17042 -12.92555 -12.59362 -12.47703 -11.85729 -11.70957 -11.41563 -11.23378 -10.82399 -10.80051 -10.48068 -10.24993 -10.13808 -9.99267 -9.93837 -9.84585 -9.66384 -9.57255 -9.55521 -9.03744 -8.61669 -6.84393 -5.72451 -3.06064 0.35325 0.88130 2.70849 3.04491 3.39034 3.44704 3.47039 3.59012 3.98254 4.43543 4.47928 4.51082 4.59515 4.70218 5.02843 5.07420 5.18220 5.26908 5.29326 5.51059 5.54646 5.68985 5.71879 5.74520 5.85561 5.99752 6.06169 6.16149 6.20570 6.25233 6.35591 6.46614 6.54238 6.60680 6.73330 6.91671 7.39912 7.52603 7.56151 7.62809 7.83012 8.07339 8.24740 9.20966 9.81245 10.47077 11.39159 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.003498 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.853584 B = 8002.918569 C = 9123.736667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.141 3.859 15 C -0.114 4.114 16 H 0.081 0.919 17 C 0.133 3.867 18 N -0.716 5.716 19 C 0.560 3.440 20 O -0.539 6.539 21 C -0.184 4.184 22 C -0.018 4.018 23 C -0.181 4.181 24 C 0.118 3.882 25 N -0.487 5.487 26 C 0.136 3.864 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.251 0.749 33 H 0.019 0.981 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 2.065 20.320 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.357 4.357 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.015 3.985 15 C -0.134 4.134 16 H 0.100 0.900 17 C 0.009 3.991 18 N -0.367 5.367 19 C 0.346 3.654 20 O -0.417 6.417 21 C -0.189 4.189 22 C -0.045 4.045 23 C -0.201 4.201 24 C -0.038 4.038 25 N -0.195 5.195 26 C -0.023 4.023 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.237 0.763 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.178 0.822 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.079 1.946 20.031 20.154 hybrid contribution 0.486 -0.157 -0.586 0.777 sum -0.593 1.789 19.445 19.536 Atomic orbital electron populations 1.21693 0.95270 1.01652 1.00583 1.22439 0.95176 0.99124 0.96239 0.91404 1.21219 0.89057 0.93143 0.90706 1.44464 1.32443 1.51691 1.04618 1.19101 1.07460 1.17808 0.91317 0.90419 1.24803 0.98420 1.00337 0.96901 1.69974 1.28755 1.45613 1.12510 0.86051 0.79305 0.80101 0.80352 1.20514 1.21754 1.21771 1.21582 0.92967 0.97038 0.86937 1.22699 0.99521 0.98131 0.93070 0.90044 1.21463 0.99593 0.94027 0.83986 1.46005 1.67218 1.13396 1.10100 1.18016 0.77861 0.86993 0.82544 1.90776 1.51869 1.15084 1.84004 1.21086 1.06156 0.95802 0.95879 1.21759 0.90926 1.01112 0.90704 1.22180 1.02056 0.95369 1.00488 1.23036 0.93270 0.93038 0.94495 1.67729 1.12146 1.39532 1.00073 1.23073 0.91628 0.89711 0.97864 0.93650 0.92740 0.92686 0.93281 0.94019 0.93811 0.96306 0.94621 0.91097 0.91340 0.76315 0.83496 0.84003 0.82209 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.17 37.16 0.34 -1.70 16 2 C -0.11 -1.95 3.01 -88.78 -0.27 -2.21 16 3 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 4 C 0.18 4.33 4.97 -3.06 -0.02 4.31 16 5 N -0.61 -15.11 3.39 -170.07 -0.58 -15.69 16 6 C -0.23 -6.29 10.28 -15.06 -0.15 -6.45 16 7 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -26.81 10.31 55.49 0.57 -26.24 16 10 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 C 0.14 2.76 6.56 -2.53 -0.02 2.74 16 15 C -0.11 -1.83 2.51 -88.47 -0.22 -2.05 16 16 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 17 C 0.13 1.85 5.13 -4.04 -0.02 1.83 16 18 N -0.72 -8.87 5.40 -61.25 -0.33 -9.20 16 19 C 0.56 7.46 7.78 -12.33 -0.10 7.37 16 20 O -0.54 -8.88 16.42 5.32 0.09 -8.80 16 21 C -0.18 -2.04 5.89 -104.82 -0.62 -2.66 16 22 C -0.02 -0.18 9.72 -38.87 -0.38 -0.55 16 23 C -0.18 -1.33 10.10 -39.49 -0.40 -1.72 16 24 C 0.12 0.95 11.17 -17.47 -0.20 0.76 16 25 N -0.49 -5.14 10.35 -12.91 -0.13 -5.28 16 26 C 0.14 1.40 10.71 -17.13 -0.18 1.21 16 27 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.05 1.28 7.02 -51.93 -0.36 0.92 16 31 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 4.22 6.50 -40.82 -0.27 3.96 16 38 H 0.15 1.33 7.74 -52.49 -0.41 0.92 16 39 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.16 1.36 6.42 -52.49 -0.34 1.03 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -33.02 339.37 -8.54 -41.56 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.93 Total: 1.05 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.32 Total: 0.54 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.47 Total: -56.41 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.02 -8.54 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092429297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.375 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds