Wall clock time and date at job start Fri Apr 10 2020 17:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.28833 * 2 1 4 4 C 1.53998 * 110.32810 * 237.86681 * 2 1 3 5 5 N 1.47490 * 107.08799 * 242.30852 * 4 2 1 6 6 C 1.34775 * 127.03496 * 154.51708 * 5 4 2 7 7 O 1.21553 * 119.99618 * 186.62415 * 6 5 4 8 8 C 1.47843 * 120.00036 * 6.62309 * 6 5 4 9 9 C 1.40026 * 120.55662 * 190.68993 * 8 6 5 10 10 C 1.38355 * 118.28517 * 180.02562 * 9 8 6 11 11 C 1.38346 * 119.30564 * 0.27058 * 10 9 8 12 12 N 1.31927 * 121.07839 * 359.43026 * 11 10 9 13 13 C 1.31699 * 121.88140 * 0.58650 * 12 11 10 14 14 C 1.48118 * 105.92754 * 334.77760 * 5 4 2 15 15 C 1.54600 * 103.42398 * 39.02311 * 14 5 4 16 16 H 1.09003 * 110.57357 * 81.16339 * 15 14 5 17 17 C 1.52995 * 110.98769 * 204.37152 * 15 14 5 18 18 N 1.46495 * 109.47413 * 288.64856 * 17 15 14 19 19 C 1.36934 * 120.00384 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99875 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00436 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99395 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00310 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47010 * 59.99629 * 23 21 19 25 25 H 1.48495 * 109.46919 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46766 * 299.99724 * 23 21 19 27 27 H 1.09004 * 109.46876 * 180.68007 * 1 2 3 28 28 H 1.09004 * 109.47507 * 300.67641 * 1 2 3 29 29 H 1.08992 * 109.47194 * 60.68374 * 1 2 3 30 30 H 1.09004 * 109.91618 * 122.94683 * 4 2 1 31 31 H 1.09000 * 110.07178 * 1.75836 * 4 2 1 32 32 H 1.08002 * 120.85535 * 0.03703 * 9 8 6 33 33 H 1.07998 * 120.34434 * 179.97438 * 10 9 8 34 34 H 1.08005 * 119.46049 * 179.70373 * 11 10 9 35 35 H 1.07994 * 119.71517 * 179.73101 * 13 12 11 36 36 H 1.08997 * 110.65869 * 157.50420 * 14 5 4 37 37 H 1.08999 * 110.66318 * 280.62684 * 14 5 4 38 38 H 1.08994 * 109.47607 * 48.65410 * 17 15 14 39 39 H 1.09008 * 109.47190 * 168.65501 * 17 15 14 40 40 H 0.97005 * 119.99955 * 0.02562 * 18 17 15 41 41 H 0.97005 * 119.99633 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8299 -1.9203 -0.7103 6 6 3.0646 -3.0858 -1.3449 7 8 3.6107 -3.9988 -0.7568 8 6 2.6580 -3.2540 -2.7564 9 6 2.6893 -4.5168 -3.3606 10 6 2.2992 -4.6203 -4.6840 11 6 1.9000 -3.4830 -5.3631 12 7 1.8752 -2.3068 -4.7662 13 6 2.2370 -2.1571 -3.5087 14 6 3.2817 -1.5367 0.6471 15 6 2.0694 -0.7720 1.2263 16 1 1.3210 -1.4693 1.6030 17 6 2.5072 0.1966 2.3266 18 7 2.9002 -0.5617 3.5168 19 6 3.3309 0.0972 4.6373 20 1 3.3812 1.1761 4.6434 21 6 3.7037 -0.6214 5.7650 22 7 3.6428 -1.9362 5.7573 23 14 4.2919 0.2775 7.2932 24 1 3.2177 1.1792 7.7813 25 1 4.6269 -0.7102 8.3502 26 1 5.4982 1.0781 6.9629 27 1 -0.3633 -1.0276 0.0122 28 1 -0.3634 0.5243 0.8839 29 1 -0.3633 0.5031 -0.8960 30 1 2.7166 -0.1220 -1.8112 31 1 1.2353 -1.1171 -1.8377 32 1 3.0095 -5.3876 -2.8077 33 1 2.3108 -5.5780 -5.1829 34 1 1.5996 -3.5601 -6.3977 35 1 2.2072 -1.1770 -3.0561 36 1 3.4982 -2.4221 1.2448 37 1 4.1541 -0.8856 0.5924 38 1 3.3539 0.7865 1.9757 39 1 1.6799 0.8612 2.5761 40 1 2.8553 -1.5307 3.5113 41 1 3.9030 -2.4384 6.5454 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105764625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:31:44 Heat of formation + Delta-G solvation = 28.941711 kcal Electronic energy + Delta-G solvation = -22637.161402 eV Core-core repulsion = 19324.864678 eV Total energy + Delta-G solvation = -3312.296724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98631 -39.52170 -37.87429 -34.77659 -33.09305 -32.77489 -31.87084 -31.28685 -29.05784 -26.86499 -25.85213 -24.30877 -23.68579 -22.98852 -21.28346 -20.05440 -19.96460 -17.75335 -17.23120 -16.96295 -16.61380 -15.86911 -15.47787 -14.87493 -14.45392 -14.31254 -14.29149 -13.90635 -13.54066 -13.34485 -13.28809 -13.08562 -12.91208 -12.70719 -12.35217 -11.96355 -11.80213 -11.30965 -11.10739 -10.84737 -10.58726 -10.49590 -10.39660 -10.24634 -10.22288 -10.04049 -9.69276 -9.62464 -9.49721 -8.87622 -8.69291 -6.92602 -5.75009 -3.04662 0.38613 0.89429 2.72570 2.84045 3.45003 3.49192 3.50650 3.58022 3.99365 4.25951 4.46500 4.51706 4.58183 4.59192 4.67514 4.78152 4.82843 5.07385 5.19596 5.25101 5.30493 5.47493 5.49440 5.57822 5.69441 5.72481 5.75068 5.78097 5.93916 6.02719 6.09666 6.15375 6.17202 6.24010 6.38250 6.44135 6.69875 6.82161 7.47349 7.53082 7.69807 8.06067 8.43104 9.54227 10.11250 10.45431 11.47499 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029276 B = 0.003320 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.179671 B = 8431.500009 C = 9138.654615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.090 3.910 5 N -0.614 5.614 6 C 0.577 3.423 7 O -0.531 6.531 8 C -0.180 4.180 9 C -0.019 4.019 10 C -0.181 4.181 11 C 0.115 3.885 12 N -0.488 5.488 13 C 0.108 3.892 14 C 0.114 3.886 15 C -0.102 4.102 16 H 0.084 0.916 17 C 0.165 3.835 18 N -0.733 5.733 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.022 0.978 39 H 0.024 0.976 40 H 0.384 0.616 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.880 -0.442 -22.988 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.109 0.891 4 C -0.033 4.033 5 N -0.347 5.347 6 C 0.365 3.635 7 O -0.408 6.408 8 C -0.185 4.185 9 C -0.045 4.045 10 C -0.201 4.201 11 C -0.041 4.041 12 N -0.197 5.197 13 C -0.049 4.049 14 C -0.007 4.007 15 C -0.122 4.122 16 H 0.103 0.897 17 C 0.037 3.963 18 N -0.377 5.377 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.177 0.823 35 H 0.197 0.803 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.218 0.782 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.783 -0.174 -23.067 23.782 hybrid contribution 0.596 -0.634 1.315 1.577 sum -5.186 -0.808 -21.752 22.377 Atomic orbital electron populations 1.21844 0.93997 1.02051 1.02100 1.22122 0.96500 0.99829 0.93509 0.89101 1.22695 0.95532 0.87726 0.97371 1.48702 1.53101 1.14347 1.18573 1.17636 0.79330 0.81146 0.85350 1.90819 1.43519 1.39236 1.67236 1.21027 1.05798 0.95994 0.95646 1.21781 0.91437 0.97080 0.94230 1.22168 1.01905 1.00833 0.95150 1.23040 0.93143 0.87816 1.00146 1.67807 1.14888 1.26353 1.10628 1.24173 0.91262 0.99823 0.89655 1.22580 0.96990 1.00337 0.80763 1.22524 0.97056 0.97901 0.94696 0.89715 1.20620 0.96624 0.92693 0.86328 1.42368 1.79307 1.05946 1.10123 1.19159 1.36204 0.91210 0.90805 0.91221 1.24757 1.02314 0.95485 0.98321 1.69658 1.54205 1.04540 1.29581 0.86266 0.78592 0.78349 0.82953 1.21286 1.21698 1.21263 0.92642 0.91660 0.92600 0.90727 0.89920 0.83484 0.84005 0.82291 0.80261 0.88996 0.90348 0.96045 0.95825 0.78191 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.90 37.16 0.33 -1.10 16 2 C -0.10 -1.11 3.17 -89.25 -0.28 -1.40 16 3 H 0.09 0.93 7.85 -51.93 -0.41 0.52 16 4 C 0.09 0.92 4.65 -2.98 -0.01 0.90 16 5 N -0.61 -8.53 3.29 -171.09 -0.56 -9.09 16 6 C 0.58 8.79 7.81 -12.33 -0.10 8.69 16 7 O -0.53 -10.10 16.66 5.32 0.09 -10.01 16 8 C -0.18 -2.19 5.86 -104.82 -0.61 -2.80 16 9 C -0.02 -0.20 9.71 -38.87 -0.38 -0.58 16 10 C -0.18 -1.42 10.10 -39.50 -0.40 -1.82 16 11 C 0.12 0.94 11.17 -17.47 -0.20 0.75 16 12 N -0.49 -5.09 10.35 -12.91 -0.13 -5.23 16 13 C 0.11 1.15 9.52 -17.13 -0.16 0.99 16 14 C 0.11 1.84 6.47 -2.31 -0.01 1.82 16 15 C -0.10 -1.56 2.60 -88.93 -0.23 -1.79 16 16 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16 17 C 0.17 3.13 5.58 -4.05 -0.02 3.11 16 18 N -0.73 -18.26 5.52 -59.91 -0.33 -18.59 16 19 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 23 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.62 7.36 -51.93 -0.38 0.24 16 31 H 0.08 0.75 5.61 -51.93 -0.29 0.46 16 32 H 0.15 1.51 7.77 -52.49 -0.41 1.11 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.16 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.18 1.62 3.59 -52.49 -0.19 1.43 16 36 H 0.09 1.75 7.81 -51.93 -0.41 1.35 16 37 H 0.08 1.24 7.94 -51.93 -0.41 0.83 16 38 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 39 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.38 10.21 7.67 -40.82 -0.31 9.90 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -33.83 337.10 -8.20 -42.03 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.72 Total: 6.67 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.33 Total: -0.58 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.30 Total: -60.63 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.83 -8.20 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105764625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.974 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds