Wall clock time and date at job start Fri Apr 10 2020 17:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.28833 * 2 1 4 4 C 1.53998 * 110.32810 * 237.86681 * 2 1 3 5 5 N 1.47490 * 107.08799 * 242.30852 * 4 2 1 6 6 C 1.34775 * 127.03496 * 154.51708 * 5 4 2 7 7 O 1.21553 * 119.99618 * 186.62415 * 6 5 4 8 8 C 1.47843 * 120.00036 * 6.62309 * 6 5 4 9 9 C 1.40026 * 120.55662 * 190.68993 * 8 6 5 10 10 C 1.38355 * 118.28517 * 180.02562 * 9 8 6 11 11 C 1.38346 * 119.30564 * 0.27058 * 10 9 8 12 12 N 1.31927 * 121.07839 * 359.43026 * 11 10 9 13 13 C 1.31699 * 121.88140 * 0.58650 * 12 11 10 14 14 C 1.48118 * 105.92754 * 334.77760 * 5 4 2 15 15 C 1.54600 * 103.42398 * 39.02311 * 14 5 4 16 16 H 1.09003 * 110.57357 * 81.16339 * 15 14 5 17 17 C 1.52995 * 110.98769 * 204.37152 * 15 14 5 18 18 N 1.46495 * 109.47413 * 288.64856 * 17 15 14 19 19 C 1.36934 * 120.00384 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99875 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00436 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99395 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00310 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47010 * 59.99629 * 23 21 19 25 25 H 1.48495 * 109.46919 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46766 * 299.99724 * 23 21 19 27 27 H 1.09004 * 109.46876 * 180.68007 * 1 2 3 28 28 H 1.09004 * 109.47507 * 300.67641 * 1 2 3 29 29 H 1.08992 * 109.47194 * 60.68374 * 1 2 3 30 30 H 1.09004 * 109.91618 * 122.94683 * 4 2 1 31 31 H 1.09000 * 110.07178 * 1.75836 * 4 2 1 32 32 H 1.08002 * 120.85535 * 0.03703 * 9 8 6 33 33 H 1.07998 * 120.34434 * 179.97438 * 10 9 8 34 34 H 1.08005 * 119.46049 * 179.70373 * 11 10 9 35 35 H 1.07994 * 119.71517 * 179.73101 * 13 12 11 36 36 H 1.08997 * 110.65869 * 157.50420 * 14 5 4 37 37 H 1.08999 * 110.66318 * 280.62684 * 14 5 4 38 38 H 1.08994 * 109.47607 * 48.65410 * 17 15 14 39 39 H 1.09008 * 109.47190 * 168.65501 * 17 15 14 40 40 H 0.97005 * 119.99955 * 0.02562 * 18 17 15 41 41 H 0.97005 * 119.99633 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8299 -1.9203 -0.7103 6 6 3.0646 -3.0858 -1.3449 7 8 3.6107 -3.9988 -0.7568 8 6 2.6580 -3.2540 -2.7564 9 6 2.6893 -4.5168 -3.3606 10 6 2.2992 -4.6203 -4.6840 11 6 1.9000 -3.4830 -5.3631 12 7 1.8752 -2.3068 -4.7662 13 6 2.2370 -2.1571 -3.5087 14 6 3.2817 -1.5367 0.6471 15 6 2.0694 -0.7720 1.2263 16 1 1.3210 -1.4693 1.6030 17 6 2.5072 0.1966 2.3266 18 7 2.9002 -0.5617 3.5168 19 6 3.3309 0.0972 4.6373 20 1 3.3812 1.1761 4.6434 21 6 3.7037 -0.6214 5.7650 22 7 3.6428 -1.9362 5.7573 23 14 4.2919 0.2775 7.2932 24 1 3.2177 1.1792 7.7813 25 1 4.6269 -0.7102 8.3502 26 1 5.4982 1.0781 6.9629 27 1 -0.3633 -1.0276 0.0122 28 1 -0.3634 0.5243 0.8839 29 1 -0.3633 0.5031 -0.8960 30 1 2.7166 -0.1220 -1.8112 31 1 1.2353 -1.1171 -1.8377 32 1 3.0095 -5.3876 -2.8077 33 1 2.3108 -5.5780 -5.1829 34 1 1.5996 -3.5601 -6.3977 35 1 2.2072 -1.1770 -3.0561 36 1 3.4982 -2.4221 1.2448 37 1 4.1541 -0.8856 0.5924 38 1 3.3539 0.7865 1.9757 39 1 1.6799 0.8612 2.5761 40 1 2.8553 -1.5307 3.5113 41 1 3.9030 -2.4384 6.5454 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105764625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:31:44 Heat of formation + Delta-G solvation = 5.570891 kcal Electronic energy + Delta-G solvation = -22638.174837 eV Core-core repulsion = 19324.864678 eV Total energy + Delta-G solvation = -3313.310159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93286 -40.47026 -39.08496 -36.52521 -34.43985 -33.54920 -33.07667 -32.62496 -30.53157 -27.81780 -27.29561 -25.56559 -24.59935 -24.36798 -22.58004 -21.18651 -21.06458 -19.20041 -18.57135 -17.98236 -17.53960 -16.99469 -16.61649 -16.45551 -15.86593 -15.43217 -15.29118 -15.00987 -14.89574 -14.75771 -14.33718 -14.19579 -14.05297 -13.72103 -13.51386 -13.30124 -12.95624 -12.74545 -12.71634 -12.47188 -12.18075 -11.94520 -11.77520 -11.58758 -11.42977 -11.28798 -11.01268 -10.92323 -10.50525 -10.24978 -9.83845 -8.99942 -7.94312 -5.23852 -0.41619 0.16343 1.46948 1.50526 1.56623 1.68004 1.75219 2.56338 2.78870 3.17002 3.37203 3.39494 3.59817 3.60894 3.79452 3.79898 3.90266 3.99726 4.14457 4.19774 4.34289 4.40041 4.47696 4.51033 4.57911 4.66371 4.76452 4.79888 4.85975 4.93381 5.01220 5.05472 5.11932 5.19897 5.25852 5.34036 5.48933 5.52751 5.56259 6.26978 6.37248 6.79675 6.92267 7.32938 8.09541 8.30927 9.29242 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029276 B = 0.003320 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.179671 B = 8431.500009 C = 9138.654615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.112 0.888 4 C 0.088 3.912 5 N -0.613 5.613 6 C 0.570 3.430 7 O -0.586 6.586 8 C -0.201 4.201 9 C -0.034 4.034 10 C -0.168 4.168 11 C 0.121 3.879 12 N -0.503 5.503 13 C 0.112 3.888 14 C 0.117 3.883 15 C -0.093 4.093 16 H 0.064 0.936 17 C 0.165 3.835 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.081 0.919 21 C -0.080 4.080 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.275 1.275 25 H -0.299 1.299 26 H -0.276 1.276 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.177 0.823 34 H 0.198 0.802 35 H 0.195 0.805 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.371 0.629 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 1.522 -25.937 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.130 0.870 4 C -0.033 4.033 5 N -0.344 5.344 6 C 0.361 3.639 7 O -0.468 6.468 8 C -0.206 4.206 9 C -0.061 4.061 10 C -0.187 4.187 11 C -0.035 4.035 12 N -0.211 5.211 13 C -0.044 4.044 14 C -0.005 4.005 15 C -0.113 4.113 16 H 0.083 0.917 17 C 0.039 3.961 18 N -0.391 5.391 19 C -0.376 4.376 20 H 0.099 0.901 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.201 1.201 25 H -0.225 1.225 26 H -0.202 1.202 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.157 0.843 33 H 0.194 0.806 34 H 0.214 0.786 35 H 0.211 0.789 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.202 0.798 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.859 1.868 -26.066 27.018 hybrid contribution 0.884 -1.252 2.094 2.595 sum -5.975 0.617 -23.973 24.714 Atomic orbital electron populations 1.21840 0.92813 1.01784 1.03298 1.22133 0.97411 1.00183 0.91144 0.87028 1.22999 0.96378 0.86641 0.97325 1.48739 1.52956 1.15153 1.17563 1.18246 0.78460 0.80607 0.86581 1.90778 1.46174 1.41086 1.68722 1.20846 1.08332 0.97560 0.93887 1.21937 0.92054 0.96407 0.95658 1.22512 1.00056 1.02503 0.93675 1.23726 0.91200 0.87007 1.01569 1.67901 1.15427 1.27533 1.10262 1.24292 0.90674 0.99711 0.89770 1.22349 0.97653 0.98607 0.81919 1.22331 0.96203 0.97281 0.95464 0.91745 1.20800 0.96941 0.93074 0.85314 1.42643 1.79365 1.05676 1.11459 1.19640 1.34511 0.91855 0.91552 0.90136 1.25630 1.03607 0.96231 1.01684 1.69843 1.56243 1.06214 1.30083 0.85180 0.78442 0.77047 0.78915 1.20114 1.22512 1.20250 0.93645 0.92393 0.89507 0.87595 0.87998 0.84346 0.80578 0.78550 0.78921 0.93344 0.90140 0.95050 0.94931 0.79810 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.90 71.98 0.64 -1.81 16 2 C -0.09 -1.79 3.17 -9.91 -0.03 -1.82 16 3 H 0.11 1.85 7.85 -2.39 -0.02 1.83 16 4 C 0.09 1.59 4.65 86.53 0.40 1.99 16 5 N -0.61 -17.20 3.29 -813.47 -2.68 -19.88 16 6 C 0.57 18.09 7.81 86.79 0.68 18.77 16 7 O -0.59 -24.10 16.66 -3.88 -0.06 -24.16 16 8 C -0.20 -4.81 5.86 -19.99 -0.12 -4.93 16 9 C -0.03 -0.70 9.71 22.73 0.22 -0.48 16 10 C -0.17 -2.16 10.10 22.32 0.23 -1.93 16 11 C 0.12 1.52 11.17 84.70 0.95 2.47 16 12 N -0.50 -8.86 10.35 -194.76 -2.01 -10.88 16 13 C 0.11 2.14 9.52 85.02 0.81 2.94 16 14 C 0.12 3.95 6.47 86.61 0.56 4.51 16 15 C -0.09 -2.88 2.60 -9.70 -0.03 -2.90 16 16 H 0.06 2.26 7.86 -2.39 -0.02 2.24 16 17 C 0.17 6.23 5.58 86.38 0.48 6.71 16 18 N -0.75 -38.32 5.52 -343.46 -1.90 -40.22 16 19 C -0.24 -13.68 9.99 84.04 0.84 -12.84 16 20 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 22 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 23 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.11 1.35 7.36 -2.39 -0.02 1.33 16 31 H 0.10 1.52 5.61 -2.39 -0.01 1.51 16 32 H 0.14 2.99 7.77 -2.91 -0.02 2.97 16 33 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.19 2.88 3.59 -2.91 -0.01 2.87 16 36 H 0.05 2.04 7.81 -2.39 -0.02 2.02 16 37 H 0.08 2.64 7.94 -2.39 -0.02 2.62 16 38 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 39 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.37 20.76 7.67 -92.70 -0.71 20.05 16 41 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -77.46 337.10 2.09 -75.37 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.33 Total: 25.73 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 6.10 Total: 6.49 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -6.31 Total: -132.22 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.06 Total: -24.16 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -77.46 2.09 -75.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105764625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.945 kcal (2) G-P(sol) polarization free energy of solvation -77.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds