Wall clock time and date at job start Fri Apr 10 2020 17:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47253 * 2 1 4 4 C 1.35834 * 116.99992 * 180.02562 * 3 2 1 5 5 N 1.32164 * 119.61472 * 0.02562 * 4 3 2 6 6 C 1.31965 * 121.74090 * 179.97438 * 5 4 3 7 7 C 1.38705 * 120.77618 * 0.02562 * 6 5 4 8 8 N 1.39972 * 120.41672 * 180.02562 * 7 6 5 9 9 S 1.65596 * 120.00398 * 44.99986 * 8 7 6 10 10 O 1.42096 * 106.40313 * 178.53873 * 9 8 7 11 11 O 1.42108 * 106.39961 * 311.45614 * 9 8 7 12 12 C 1.76197 * 107.21867 * 64.99720 * 9 8 7 13 13 H 1.08002 * 119.99925 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99879 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99961 * 180.02562 * 14 12 9 16 16 Si 1.86797 * 120.00353 * 359.97438 * 14 12 9 17 17 H 1.48497 * 109.47227 * 89.99832 * 16 14 12 18 18 H 1.48493 * 109.47447 * 210.00085 * 16 14 12 19 19 H 1.48504 * 109.47003 * 330.00151 * 16 14 12 20 20 C 1.39336 * 119.16052 * 359.97438 * 7 6 5 21 21 C 1.38532 * 118.40613 * 0.02562 * 20 7 6 22 22 F 1.35099 * 120.42436 * 180.02562 * 21 20 7 23 23 H 1.09008 * 109.46561 * 299.99942 * 1 2 3 24 24 H 1.09000 * 109.47503 * 59.99650 * 1 2 3 25 25 H 1.08991 * 109.47567 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47013 * 240.00207 * 2 1 3 27 27 H 1.08994 * 109.47095 * 120.00135 * 2 1 3 28 28 H 1.08000 * 119.61395 * 180.27844 * 6 5 4 29 29 H 0.97001 * 119.99547 * 224.99856 * 8 7 6 30 30 H 0.97001 * 120.00104 * 179.97438 * 15 14 12 31 31 H 1.08007 * 120.79823 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3530 1.5252 -0.0005 5 7 4.1510 0.4717 -0.0015 6 6 5.4648 0.5959 -0.0026 7 6 6.0592 1.8491 -0.0022 8 7 7.4535 1.9722 -0.0038 9 16 8.3662 1.0358 -1.0199 10 8 9.7189 1.4166 -0.8098 11 8 7.9008 -0.2977 -0.8630 12 6 7.9656 1.5118 -2.6684 13 1 7.2376 2.2900 -2.8440 14 6 8.5816 0.8909 -3.7342 15 7 8.2830 1.2465 -4.9647 16 14 9.8414 -0.4546 -3.4306 17 1 9.1567 -1.7713 -3.3793 18 1 10.8378 -0.4573 -4.5315 19 1 10.5310 -0.2047 -2.1394 20 6 5.2508 2.9840 -0.0011 21 6 3.8759 2.8138 0.0000 22 9 3.0538 3.8858 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 6.0845 -0.2886 -0.0080 29 1 7.8851 2.6059 0.5902 30 1 8.7167 0.8099 -5.7145 31 1 5.6855 3.9727 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192938173.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:10 Heat of formation + Delta-G solvation = -123.171041 kcal Electronic energy + Delta-G solvation = -21079.089974 eV Core-core repulsion = 17402.795941 eV Total energy + Delta-G solvation = -3676.294033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.75218 -40.45523 -38.26790 -35.94205 -34.88452 -34.73525 -33.15589 -31.93862 -31.41439 -28.31545 -26.55629 -24.49625 -22.97472 -22.33276 -19.51131 -18.51591 -18.14300 -18.00825 -17.16845 -16.61179 -16.38062 -15.82772 -15.29837 -15.14581 -15.02296 -14.18752 -13.93751 -13.57889 -13.51032 -13.11734 -13.01966 -12.97321 -12.55047 -12.47973 -11.80488 -11.58187 -11.49155 -11.18444 -10.86921 -10.82923 -10.67226 -10.44227 -10.02901 -9.74941 -9.44402 -9.32149 -9.09665 -7.88591 -6.91178 -5.49100 1.05040 1.14322 1.74815 2.93253 2.99395 3.09538 3.16549 3.68792 3.83437 3.89258 4.18940 4.44615 4.48823 4.80510 4.89310 4.97050 5.04513 5.12225 5.27288 5.38537 5.53782 5.64475 5.77447 5.86680 5.94916 6.09838 6.39846 6.51322 7.17043 7.34041 7.38337 7.84291 8.08150 8.57058 10.20835 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.022522 B = 0.005140 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.956981 B = 5446.337271 C = 5740.835606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.304 6.304 4 C 0.275 3.725 5 N -0.491 5.491 6 C 0.110 3.890 7 C 0.118 3.882 8 N -1.054 6.054 9 S 2.665 3.335 10 O -0.993 6.993 11 O -0.999 6.999 12 C -1.013 5.013 13 H 0.123 0.877 14 C 0.154 3.846 15 N -0.816 5.816 16 Si 0.802 3.198 17 H -0.243 1.243 18 H -0.253 1.253 19 H -0.220 1.220 20 C -0.098 4.098 21 C 0.047 3.953 22 F -0.126 7.126 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.202 0.798 29 H 0.419 0.581 30 H 0.283 0.717 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.463 0.268 9.566 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.094 3.906 5 N -0.213 5.213 6 C -0.049 4.049 7 C 0.018 3.982 8 N -0.800 5.800 9 S 2.768 3.232 10 O -0.983 6.983 11 O -0.989 6.989 12 C -1.148 5.148 13 H 0.141 0.859 14 C -0.066 4.066 15 N -0.444 5.444 16 Si 0.622 3.378 17 H -0.167 1.167 18 H -0.177 1.177 19 H -0.143 1.143 20 C -0.128 4.128 21 C 0.024 3.976 22 F -0.104 7.104 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.218 0.782 29 H 0.254 0.746 30 H 0.093 0.907 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.481 -1.129 9.562 13.512 hybrid contribution 0.679 1.060 -0.468 1.343 sum -8.801 -0.069 9.094 12.656 Atomic orbital electron populations 1.21811 0.93127 1.02762 1.03220 1.22644 0.94578 0.80987 1.02916 1.86269 1.15900 1.30787 1.88201 1.19811 0.85149 0.88738 0.96944 1.67540 1.05913 1.30571 1.17265 1.23645 0.89271 0.97992 0.94005 1.18057 0.84292 0.93318 1.02576 1.53521 1.11701 1.58969 1.55790 1.01887 0.72229 0.72989 0.76064 1.93512 1.34020 1.83330 1.87458 1.93357 1.81103 1.36777 1.87669 1.30241 1.38506 1.34910 1.11134 0.85875 1.24412 0.93708 0.94282 0.94247 1.69976 1.37897 1.37816 0.98751 0.87852 0.82813 0.83764 0.83395 1.16705 1.17688 1.14258 1.21486 0.90383 1.00769 1.00153 1.17333 0.87787 0.81689 1.10779 1.91504 1.71430 1.53163 1.94327 0.91797 0.91644 0.90325 0.91210 0.91450 0.78205 0.74638 0.90651 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.06 0.78 6.03 37.16 0.22 1.00 16 3 O -0.30 -4.65 9.99 -19.22 -0.19 -4.84 16 4 C 0.27 4.59 7.49 -17.10 -0.13 4.46 16 5 N -0.49 -8.55 9.20 -13.11 -0.12 -8.68 16 6 C 0.11 2.00 10.36 -17.32 -0.18 1.82 16 7 C 0.12 2.03 6.24 -83.56 -0.52 1.51 16 8 N -1.05 -18.47 5.80 32.51 0.19 -18.28 16 9 S 2.66 61.38 4.17 -107.50 -0.45 60.93 16 10 O -0.99 -24.61 16.02 -57.17 -0.92 -25.53 16 11 O -1.00 -23.85 13.79 -57.17 -0.79 -24.64 16 12 C -1.01 -27.01 10.22 30.60 0.31 -26.69 16 13 H 0.12 3.37 8.06 -52.49 -0.42 2.94 16 14 C 0.15 4.26 5.47 -17.82 -0.10 4.16 16 15 N -0.82 -22.91 13.96 55.43 0.77 -22.14 16 16 Si 0.80 19.59 26.54 -169.99 -4.51 15.08 16 17 H -0.24 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.25 -5.71 7.11 56.52 0.40 -5.30 16 19 H -0.22 -5.42 5.61 56.52 0.32 -5.10 16 20 C -0.10 -1.50 10.09 -39.06 -0.39 -1.89 16 21 C 0.05 0.75 7.34 -39.17 -0.29 0.47 16 22 F -0.13 -1.96 17.12 2.25 0.04 -1.92 16 23 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 27 H 0.07 0.79 8.10 -51.93 -0.42 0.36 16 28 H 0.20 3.77 5.59 -52.49 -0.29 3.48 16 29 H 0.42 5.80 8.96 -34.47 -0.31 5.49 16 30 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.16 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 289.53 15.07 4.36 4.36 Total: -1.00 -30.96 289.53 -5.08 -36.04 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -2.78 Total: 5.74 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -0.69 Total: -16.15 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.84 Total: -49.09 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -1.90 Total: -55.00 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.51 Total: 15.08 kcal Atomic # 16 Polarization: 61.38 SS G_CDS: -0.45 Total: 60.93 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.96 -5.08 -36.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938173.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.130 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds