Wall clock time and date at job start Fri Apr 10 2020 17:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47253 * 2 1 4 4 C 1.35834 * 116.99992 * 180.02562 * 3 2 1 5 5 N 1.32164 * 119.61472 * 0.02562 * 4 3 2 6 6 C 1.31965 * 121.74090 * 179.97438 * 5 4 3 7 7 C 1.38705 * 120.77618 * 0.02562 * 6 5 4 8 8 N 1.39972 * 120.41672 * 180.02562 * 7 6 5 9 9 S 1.65596 * 120.00398 * 44.99986 * 8 7 6 10 10 O 1.42096 * 106.40313 * 178.53873 * 9 8 7 11 11 O 1.42108 * 106.39961 * 311.45614 * 9 8 7 12 12 C 1.76197 * 107.21867 * 64.99720 * 9 8 7 13 13 H 1.08002 * 119.99925 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99879 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99961 * 180.02562 * 14 12 9 16 16 Si 1.86797 * 120.00353 * 359.97438 * 14 12 9 17 17 H 1.48497 * 109.47227 * 89.99832 * 16 14 12 18 18 H 1.48493 * 109.47447 * 210.00085 * 16 14 12 19 19 H 1.48504 * 109.47003 * 330.00151 * 16 14 12 20 20 C 1.39336 * 119.16052 * 359.97438 * 7 6 5 21 21 C 1.38532 * 118.40613 * 0.02562 * 20 7 6 22 22 F 1.35099 * 120.42436 * 180.02562 * 21 20 7 23 23 H 1.09008 * 109.46561 * 299.99942 * 1 2 3 24 24 H 1.09000 * 109.47503 * 59.99650 * 1 2 3 25 25 H 1.08991 * 109.47567 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47013 * 240.00207 * 2 1 3 27 27 H 1.08994 * 109.47095 * 120.00135 * 2 1 3 28 28 H 1.08000 * 119.61395 * 180.27844 * 6 5 4 29 29 H 0.97001 * 119.99547 * 224.99856 * 8 7 6 30 30 H 0.97001 * 120.00104 * 179.97438 * 15 14 12 31 31 H 1.08007 * 120.79823 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3530 1.5252 -0.0005 5 7 4.1510 0.4717 -0.0015 6 6 5.4648 0.5959 -0.0026 7 6 6.0592 1.8491 -0.0022 8 7 7.4535 1.9722 -0.0038 9 16 8.3662 1.0358 -1.0199 10 8 9.7189 1.4166 -0.8098 11 8 7.9008 -0.2977 -0.8630 12 6 7.9656 1.5118 -2.6684 13 1 7.2376 2.2900 -2.8440 14 6 8.5816 0.8909 -3.7342 15 7 8.2830 1.2465 -4.9647 16 14 9.8414 -0.4546 -3.4306 17 1 9.1567 -1.7713 -3.3793 18 1 10.8378 -0.4573 -4.5315 19 1 10.5310 -0.2047 -2.1394 20 6 5.2508 2.9840 -0.0011 21 6 3.8759 2.8138 0.0000 22 9 3.0538 3.8858 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 6.0845 -0.2886 -0.0080 29 1 7.8851 2.6059 0.5902 30 1 8.7167 0.8099 -5.7145 31 1 5.6855 3.9727 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938173.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:09 Heat of formation + Delta-G solvation = -148.386511 kcal Electronic energy + Delta-G solvation = -21080.183399 eV Core-core repulsion = 17402.795941 eV Total energy + Delta-G solvation = -3677.387458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.01270 -41.75157 -39.50025 -37.82387 -36.65209 -36.28655 -35.20909 -33.09426 -32.50760 -29.64162 -28.60512 -25.68738 -24.30812 -23.38389 -21.30597 -19.90929 -19.69178 -19.42627 -18.93722 -18.04166 -17.65851 -17.43209 -16.89764 -16.42608 -16.28166 -15.98213 -15.50051 -15.07249 -14.96224 -14.72755 -14.44963 -14.23332 -13.80099 -13.49611 -13.41446 -13.28213 -12.97431 -12.73561 -12.59223 -12.48402 -12.22829 -11.86343 -11.62561 -11.34284 -11.21474 -11.06723 -10.61064 -9.24754 -8.97558 -7.57134 -0.36867 -0.21657 0.10242 1.07487 1.17146 1.22314 1.77551 1.89026 2.23515 2.35736 2.42635 2.88779 3.12917 3.19132 3.50770 3.69974 3.91826 4.09755 4.14519 4.19541 4.30149 4.47877 4.73613 4.82640 4.96237 4.96475 5.19244 5.26541 5.35167 5.93007 5.99168 6.09955 6.50809 6.50983 8.19872 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.022522 B = 0.005140 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.956981 B = 5446.337271 C = 5740.835606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 O -0.310 6.310 4 C 0.272 3.728 5 N -0.499 5.499 6 C 0.096 3.904 7 C 0.101 3.899 8 N -1.036 6.036 9 S 2.695 3.305 10 O -1.009 7.009 11 O -1.008 7.008 12 C -1.037 5.037 13 H 0.105 0.895 14 C 0.109 3.891 15 N -0.852 5.852 16 Si 0.826 3.174 17 H -0.236 1.236 18 H -0.223 1.223 19 H -0.223 1.223 20 C -0.081 4.081 21 C 0.044 3.956 22 F -0.121 7.121 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.191 0.809 29 H 0.437 0.563 30 H 0.292 0.708 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 0.325 10.499 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.218 6.218 4 C 0.090 3.910 5 N -0.222 5.222 6 C -0.062 4.062 7 C 0.002 3.998 8 N -0.788 5.788 9 S 2.795 3.205 10 O -1.000 7.000 11 O -0.998 6.998 12 C -1.170 5.170 13 H 0.123 0.877 14 C -0.108 4.108 15 N -0.482 5.482 16 Si 0.643 3.357 17 H -0.159 1.159 18 H -0.146 1.146 19 H -0.145 1.145 20 C -0.111 4.111 21 C 0.021 3.979 22 F -0.100 7.100 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.208 0.792 29 H 0.277 0.723 30 H 0.103 0.897 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.903 -1.061 10.472 14.452 hybrid contribution 0.637 1.092 -0.700 1.445 sum -9.266 0.031 9.772 13.466 Atomic orbital electron populations 1.21831 0.90462 1.04438 1.03453 1.22944 0.96667 0.79635 1.02717 1.86291 1.15030 1.32636 1.87816 1.20065 0.85759 0.88975 0.96219 1.67514 1.05680 1.31086 1.17893 1.23566 0.89669 0.98209 0.94805 1.18077 0.83930 0.93748 1.04081 1.52863 1.11775 1.59114 1.55059 1.00885 0.71856 0.72890 0.74821 1.93484 1.35255 1.83757 1.87464 1.93351 1.81329 1.37549 1.87549 1.30828 1.37883 1.34369 1.13918 0.87729 1.25182 0.95242 0.96027 0.94367 1.70014 1.39321 1.39256 0.99593 0.87469 0.81961 0.82038 0.84271 1.15868 1.14554 1.14507 1.21738 0.89871 1.01566 0.97877 1.17398 0.88131 0.81643 1.10757 1.91517 1.71344 1.52840 1.94283 0.91175 0.91755 0.87919 0.92050 0.91045 0.79232 0.72336 0.89748 0.79181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 10.28 71.98 0.74 -1.59 16 2 C 0.06 1.28 6.03 71.98 0.43 1.72 16 3 O -0.31 -9.15 9.99 -91.69 -0.92 -10.07 16 4 C 0.27 8.81 7.49 84.84 0.64 9.45 16 5 N -0.50 -17.16 9.20 -308.21 -2.84 -20.00 16 6 C 0.10 3.46 10.36 84.78 0.88 4.33 16 7 C 0.10 3.36 6.24 38.22 0.24 3.60 16 8 N -1.04 -34.80 5.80 -51.05 -0.30 -35.10 16 9 S 2.69 121.82 4.17 -56.49 -0.24 121.59 16 10 O -1.01 -48.79 16.02 -128.00 -2.05 -50.84 16 11 O -1.01 -47.42 13.79 -128.00 -1.76 -49.18 16 12 C -1.04 -55.53 10.22 67.73 0.69 -54.84 16 13 H 0.10 5.81 8.06 -2.91 -0.02 5.79 16 14 C 0.11 6.03 5.47 84.65 0.46 6.50 16 15 N -0.85 -48.17 13.96 21.45 0.30 -47.87 16 16 Si 0.83 38.98 26.54 68.60 1.82 40.80 16 17 H -0.24 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.22 -9.40 7.11 99.48 0.71 -8.69 16 19 H -0.22 -10.57 5.61 99.48 0.56 -10.02 16 20 C -0.08 -2.31 10.09 22.60 0.23 -2.08 16 21 C 0.04 1.33 7.34 22.54 0.17 1.49 16 22 F -0.12 -3.54 17.12 44.97 0.77 -2.77 16 23 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 27 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 28 H 0.19 7.16 5.59 -2.91 -0.02 7.15 16 29 H 0.44 11.17 8.96 -96.75 -0.87 10.30 16 30 H 0.29 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.19 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -65.36 289.53 -0.56 -65.92 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.17 Total: 18.95 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 4.48 Total: -31.42 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -2.83 Total: -102.97 kcal Atomic # 8 Polarization: -105.36 SS G_CDS: -4.73 Total: -110.09 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.77 Total: -2.77 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.82 Total: 40.80 kcal Atomic # 16 Polarization: 121.82 SS G_CDS: -0.24 Total: 121.59 kcal Total: -65.36 -0.56 -65.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938173.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.470 kcal (2) G-P(sol) polarization free energy of solvation -65.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds