Wall clock time and date at job start Fri Apr 10 2020 17:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32436 * 124.56697 * 2 1 4 4 C 1.44755 * 113.17204 * 180.27047 * 3 2 1 5 5 C 1.46444 * 123.62419 * 179.69333 * 4 3 2 6 6 N 1.34775 * 119.99828 * 0.02562 * 5 4 3 7 7 O 1.21737 * 119.99832 * 180.02562 * 5 4 3 8 8 C 1.37232 * 112.75011 * 359.50902 * 4 3 2 9 9 N 1.38195 * 124.66514 * 180.20169 * 8 4 3 10 10 S 1.65601 * 119.99970 * 180.29121 * 9 8 4 11 11 O 1.42103 * 106.40369 * 178.53592 * 10 9 8 12 12 O 1.42097 * 106.40088 * 311.45477 * 10 9 8 13 13 C 1.76199 * 107.22083 * 64.99675 * 10 9 8 14 14 H 1.07998 * 119.99593 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00020 * 180.02562 * 13 10 9 16 16 N 1.31512 * 119.99790 * 179.97438 * 15 13 10 17 17 Si 1.86802 * 119.99841 * 359.97438 * 15 13 10 18 18 H 1.48499 * 109.47388 * 90.00112 * 17 15 13 19 19 H 1.48507 * 109.46854 * 209.99924 * 17 15 13 20 20 H 1.48498 * 109.47452 * 329.99915 * 17 15 13 21 21 S 1.70438 * 110.66792 * 0.47426 * 8 4 3 22 22 H 1.08994 * 109.47129 * 90.00485 * 1 2 3 23 23 H 1.09003 * 109.46593 * 210.00362 * 1 2 3 24 24 H 1.09001 * 109.47369 * 329.99836 * 1 2 3 25 25 H 1.08002 * 123.41244 * 359.97438 * 3 2 1 26 26 H 0.96992 * 120.00020 * 359.97438 * 6 5 4 27 27 H 0.96998 * 119.99666 * 180.02562 * 6 5 4 28 28 H 0.97008 * 120.00504 * 0.27938 * 9 8 4 29 29 H 0.97004 * 119.99616 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2584 1.0906 0.0000 4 6 3.6774 0.8046 -0.0063 5 6 4.7133 1.8397 -0.0141 6 7 4.3648 3.1417 -0.0152 7 8 5.8890 1.5242 -0.0195 8 6 3.9477 -0.5409 -0.0001 9 7 5.2168 -1.0877 0.0000 10 16 5.4098 -2.7324 0.0005 11 8 6.8100 -2.9722 -0.0344 12 8 4.5604 -3.2357 1.0225 13 6 4.7639 -3.3339 -1.5245 14 1 4.3452 -2.6447 -2.2428 15 6 4.7920 -4.6846 -1.8002 16 7 4.3095 -5.1336 -2.9382 17 14 5.5156 -5.8767 -0.5572 18 1 4.4473 -6.3397 0.3645 19 1 6.0948 -7.0438 -1.2698 20 1 6.5799 -5.1943 0.2217 21 16 2.5027 -1.4447 -0.0001 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3632 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.8535 2.0918 -0.0004 26 1 3.4280 3.3930 -0.0112 27 1 5.0509 3.8273 -0.0207 28 1 5.9948 -0.5081 -0.0005 29 1 4.3296 -6.0838 -3.1323 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938195.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:11 Heat of formation + Delta-G solvation = -122.346009 kcal Electronic energy + Delta-G solvation = -19078.828656 eV Core-core repulsion = 15832.950481 eV Total energy + Delta-G solvation = -3245.878175 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.023 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91269 -38.31925 -37.97790 -36.82465 -36.43230 -35.27891 -34.51295 -31.72595 -28.72370 -26.89717 -25.78888 -21.96477 -21.70036 -20.93351 -20.05922 -19.10987 -18.70423 -18.02874 -17.31120 -16.79617 -16.56826 -16.18663 -15.97461 -15.61247 -15.11293 -15.07438 -14.70876 -14.54622 -13.95791 -13.83290 -13.54065 -13.19777 -13.04000 -13.00097 -12.86251 -12.75334 -11.99547 -11.89550 -11.60842 -11.38235 -11.24224 -11.08850 -10.69730 -9.47672 -9.04463 -9.01838 -7.63397 -0.34764 -0.11497 0.14621 0.96921 1.02253 1.03638 1.12166 1.18220 1.84838 2.11567 2.34441 2.36628 2.73641 2.98416 3.75020 3.87022 4.06115 4.16130 4.40091 4.71270 4.93037 4.96602 5.05423 5.23448 5.29848 5.52737 5.66416 5.92487 5.97581 6.42527 6.47864 7.35850 8.14443 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.020915 B = 0.007275 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.418760 B = 3848.085730 C = 4669.987820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.217 4.217 3 C -0.080 4.080 4 C -0.254 4.254 5 C 0.587 3.413 6 N -0.819 5.819 7 O -0.601 6.601 8 C 0.089 3.911 9 N -1.010 6.010 10 S 2.659 3.341 11 O -1.012 7.012 12 O -0.995 6.995 13 C -1.022 5.022 14 H 0.114 0.886 15 C 0.122 3.878 16 N -0.835 5.835 17 Si 0.816 3.184 18 H -0.228 1.228 19 H -0.214 1.214 20 H -0.238 1.238 21 S 0.189 5.811 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.199 0.801 26 H 0.420 0.580 27 H 0.413 0.587 28 H 0.435 0.565 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.246 14.374 4.871 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.334 4.334 3 C -0.108 4.108 4 C -0.276 4.276 5 C 0.374 3.626 6 N -0.383 5.383 7 O -0.485 6.485 8 C -0.134 4.134 9 N -0.760 5.760 10 S 2.761 3.239 11 O -1.003 7.003 12 O -0.984 6.984 13 C -1.157 5.157 14 H 0.132 0.868 15 C -0.097 4.097 16 N -0.464 5.464 17 Si 0.633 3.367 18 H -0.151 1.151 19 H -0.136 1.136 20 H -0.161 1.161 21 S 0.450 5.550 22 H 0.104 0.896 23 H 0.087 0.913 24 H 0.128 0.872 25 H 0.216 0.784 26 H 0.252 0.748 27 H 0.246 0.754 28 H 0.278 0.722 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.574 11.744 5.450 16.102 hybrid contribution 1.139 1.301 -0.504 1.801 sum -8.435 13.045 4.946 16.303 Atomic orbital electron populations 1.20459 0.84376 1.04658 1.04014 1.24688 1.02010 0.94355 1.12360 1.21063 0.87651 1.01010 1.01031 1.20129 0.96008 0.90009 1.21428 1.17435 0.86636 0.83981 0.74540 1.43275 1.13607 1.05163 1.76293 1.90685 1.20952 1.82805 1.54035 1.22094 0.91003 0.98178 1.02081 1.53007 1.11037 1.27762 1.84148 1.01933 0.73899 0.71003 0.77076 1.93486 1.34472 1.82815 1.89476 1.93445 1.68237 1.76755 1.60000 1.30360 1.57400 1.03140 1.24787 0.86787 1.24949 0.90625 0.98095 0.96060 1.69966 1.36817 1.17683 1.21924 0.87613 0.82630 0.84282 0.82180 1.15082 1.13584 1.16127 1.84778 0.91164 1.07771 1.71284 0.89642 0.91284 0.87232 0.78387 0.74794 0.75439 0.72243 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.34 71.24 0.74 -0.46 15 2 C -0.22 -5.39 6.42 24.57 0.16 -5.24 15 3 C -0.08 -1.76 9.74 22.82 0.22 -1.54 15 4 C -0.25 -8.16 6.01 -19.71 -0.12 -8.28 15 5 C 0.59 18.00 8.04 86.38 0.69 18.69 15 6 N -0.82 -14.01 8.85 -176.53 -1.56 -15.57 15 7 O -0.60 -23.85 15.28 -4.47 -0.07 -23.92 15 8 C 0.09 3.62 6.87 83.45 0.57 4.19 15 9 N -1.01 -46.79 5.78 -55.98 -0.32 -47.11 15 10 S 2.66 141.09 3.82 -56.49 -0.22 140.87 15 11 O -1.01 -57.88 16.02 -128.00 -2.05 -59.93 15 12 O -0.99 -53.08 15.17 -128.00 -1.94 -55.02 15 13 C -1.02 -57.74 9.46 67.73 0.64 -57.10 15 14 H 0.11 6.60 8.06 -2.91 -0.02 6.58 15 15 C 0.12 6.88 5.47 84.66 0.46 7.34 15 16 N -0.83 -46.76 13.96 21.45 0.30 -46.46 15 17 Si 0.82 40.23 26.54 68.60 1.82 42.05 15 18 H -0.23 -10.66 7.11 99.48 0.71 -9.96 15 19 H -0.21 -9.22 7.11 99.48 0.71 -8.52 15 20 H -0.24 -12.40 5.61 99.48 0.56 -11.84 15 21 S 0.19 7.13 20.02 -56.49 -1.13 6.00 15 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 15 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 15 24 H 0.11 0.99 8.14 -2.39 -0.02 0.98 15 25 H 0.20 2.06 7.10 -2.91 -0.02 2.04 15 26 H 0.42 3.81 7.37 -92.71 -0.68 3.13 15 27 H 0.41 5.71 8.93 -92.71 -0.83 4.89 15 28 H 0.43 19.78 6.30 -96.74 -0.61 19.17 15 29 H 0.30 14.80 8.31 -92.71 -0.77 14.03 15 Total: -1.00 -75.89 278.10 -2.83 -78.72 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -1.02 Total: 22.76 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 3.37 Total: -42.39 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -1.59 Total: -109.14 kcal Atomic # 8 Polarization: -134.81 SS G_CDS: -4.06 Total: -138.87 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.82 Total: 42.05 kcal Atomic # 16 Polarization: 148.22 SS G_CDS: -1.35 Total: 146.87 kcal Total: -75.89 -2.83 -78.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938195.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.629 kcal (2) G-P(sol) polarization free energy of solvation -75.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds