Wall clock time and date at job start Fri Apr 10 2020 17:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00146 * 0.02562 * 7 2 1 10 10 O 1.42108 * 106.40130 * 293.54086 * 9 7 2 11 11 O 1.42098 * 106.40149 * 66.45372 * 9 7 2 12 12 N 1.65601 * 107.21953 * 180.02562 * 9 7 2 13 13 C 1.46935 * 120.60753 * 269.72089 * 12 9 7 14 14 C 1.53698 * 108.50085 * 125.84570 * 13 12 9 15 15 C 1.52552 * 109.35952 * 54.08408 * 14 13 12 16 16 C 1.53710 * 110.13884 * 177.75577 * 15 14 13 17 17 N 1.47205 * 103.60614 * 241.20999 * 16 15 14 18 18 C 1.34074 * 108.85298 * 0.02562 * 17 16 15 19 19 O 1.21512 * 123.09108 * 180.02562 * 18 17 16 20 20 O 1.33923 * 113.81501 * 359.97438 * 18 17 16 21 21 C 1.52555 * 110.74043 * 299.83438 * 15 14 13 22 22 C 1.46932 * 120.61060 * 89.99879 * 12 9 7 23 23 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 24 24 H 1.09004 * 109.58891 * 245.65531 * 13 12 9 25 25 H 1.08997 * 109.59314 * 6.10926 * 13 12 9 26 26 H 1.09005 * 109.61066 * 294.06097 * 14 13 12 27 27 H 1.08993 * 109.41878 * 173.99384 * 14 13 12 28 28 H 1.09000 * 110.60036 * 359.74000 * 16 15 14 29 29 H 1.09001 * 110.59455 * 122.53044 * 16 15 14 30 30 H 0.97009 * 125.57467 * 180.02562 * 17 16 15 31 31 H 1.09009 * 109.47255 * 300.05861 * 21 15 14 32 32 H 1.08997 * 109.48754 * 180.02562 * 21 15 14 33 33 H 1.08995 * 109.59519 * 353.89273 * 22 12 9 34 34 H 1.09003 * 109.59252 * 114.34200 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 16 1.1235 -2.7200 -0.0136 10 8 0.4508 -2.8015 1.2355 11 8 0.4517 -2.7890 -1.2639 12 7 2.2482 -3.9355 -0.0185 13 6 2.7527 -4.4828 -1.2854 14 6 4.2876 -4.4018 -1.2747 15 6 4.8216 -5.0899 -0.0223 16 6 6.3585 -5.0685 -0.0213 17 7 6.7247 -6.4943 -0.0275 18 6 5.6035 -7.2295 -0.0320 19 8 5.6070 -8.4446 -0.0372 20 8 4.4795 -6.5015 -0.0293 21 6 4.2859 -4.4134 1.2358 22 6 2.7554 -4.4906 1.2438 23 1 -0.4850 0.8401 0.0040 24 1 2.4396 -5.5221 -1.3850 25 1 2.3602 -3.8989 -2.1179 26 1 4.5988 -3.3572 -1.2762 27 1 4.6829 -4.9002 -2.1598 28 1 6.7358 -4.5719 -0.9152 29 1 6.7346 -4.5776 0.8764 30 1 7.6293 -6.8446 -0.0282 31 1 4.5973 -3.3688 1.2473 32 1 4.6799 -4.9200 2.1168 33 1 2.3645 -3.9121 2.0808 34 1 2.4424 -5.5305 1.3377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:23 Heat of formation + Delta-G solvation = -193.467001 kcal Electronic energy + Delta-G solvation = -22359.620766 eV Core-core repulsion = 18803.738776 eV Total energy + Delta-G solvation = -3555.881990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.81714 -39.35698 -37.54222 -37.45735 -36.11853 -35.68316 -35.13509 -32.91548 -32.15253 -28.21475 -27.58374 -24.58365 -23.93703 -23.61026 -21.77418 -20.56963 -19.41545 -18.51875 -18.17914 -17.68712 -17.27576 -16.91608 -16.67715 -16.01923 -15.86942 -15.35954 -15.28225 -15.04252 -15.01424 -14.41265 -14.39190 -13.94658 -13.31768 -13.30477 -12.96524 -12.91265 -12.81983 -12.58594 -12.48321 -12.32564 -12.25068 -12.16450 -11.89508 -11.50449 -11.33684 -11.20334 -10.89442 -10.28411 -9.81410 -8.69454 -7.43536 0.31056 1.40056 1.40356 1.56278 1.66012 1.79197 2.24802 2.60220 2.63641 2.81963 3.17661 3.50410 3.57480 3.83673 4.04039 4.05101 4.33763 4.34609 4.42079 4.45214 4.57161 4.65106 4.77007 4.83434 4.84506 4.97072 5.08740 5.21488 5.25133 5.38300 5.87260 5.96350 5.97423 6.31064 6.83007 7.10435 8.25787 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.027658 B = 0.005337 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.111519 B = 5244.729159 C = 5739.419017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.994 3.006 4 H -0.256 1.256 5 H -0.238 1.238 6 H -0.272 1.272 7 C -1.027 5.027 8 H 0.132 0.868 9 S 2.710 3.290 10 O -1.046 7.046 11 O -1.045 7.045 12 N -1.006 6.006 13 C 0.118 3.882 14 C -0.129 4.129 15 C 0.094 3.906 16 C 0.080 3.920 17 N -0.716 5.716 18 C 0.638 3.362 19 O -0.583 6.583 20 O -0.334 6.334 21 C -0.129 4.129 22 C 0.118 3.882 23 H 0.297 0.703 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.446 0.554 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.532 -3.414 -0.020 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.146 4.146 3 Si 0.812 3.188 4 H -0.180 1.180 5 H -0.161 1.161 6 H -0.197 1.197 7 C -1.161 5.161 8 H 0.150 0.850 9 S 2.814 3.186 10 O -1.036 7.036 11 O -1.035 7.035 12 N -0.845 5.845 13 C -0.008 4.008 14 C -0.167 4.167 15 C 0.057 3.943 16 C -0.043 4.043 17 N -0.389 5.389 18 C 0.391 3.609 19 O -0.472 6.472 20 O -0.244 6.244 21 C -0.167 4.167 22 C -0.007 4.007 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.135 0.865 27 H 0.122 0.878 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.291 0.709 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.975 -4.129 -0.032 17.470 hybrid contribution 0.330 0.675 0.017 0.752 sum 17.306 -3.454 -0.014 17.647 Atomic orbital electron populations 1.70027 1.09115 1.32254 1.41782 1.26101 0.95277 1.05616 0.87573 0.85079 0.79352 0.74460 0.79944 1.18027 1.16050 1.19655 1.30893 1.07474 1.11525 1.66191 0.84987 1.00255 0.72953 0.74109 0.71321 1.93291 1.74692 1.88425 1.47163 1.93290 1.74700 1.88464 1.47090 1.57697 1.61626 1.53359 1.11778 1.21469 0.95034 0.99260 0.85006 1.22316 0.94617 1.03253 0.96542 1.23040 0.95508 0.77248 0.98470 1.23185 0.91121 0.82074 1.07966 1.45916 1.08408 1.07378 1.77176 1.18875 0.80848 0.85564 0.75605 1.91013 1.86438 1.11546 1.58241 1.87344 1.30108 1.20835 1.86079 1.22245 0.94648 1.03381 0.96475 1.21372 0.95072 0.99167 0.85136 0.89314 0.91885 0.89913 0.86504 0.87837 0.85488 0.85436 0.70914 0.86489 0.87789 0.89921 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.52 13.19 21.45 0.28 -52.24 16 2 C 0.07 3.51 5.46 84.66 0.46 3.97 16 3 Si 0.99 38.26 29.54 68.60 2.03 40.28 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 5 H -0.24 -8.13 7.11 99.48 0.71 -7.42 16 6 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 7 C -1.03 -52.12 9.75 67.74 0.66 -51.46 16 8 H 0.13 5.64 7.81 -2.91 -0.02 5.62 16 9 S 2.71 141.84 4.98 -56.49 -0.28 141.56 16 10 O -1.05 -61.73 16.72 -128.00 -2.14 -63.87 16 11 O -1.05 -61.69 16.72 -128.00 -2.14 -63.83 16 12 N -1.01 -38.45 3.28 -512.00 -1.68 -40.12 16 13 C 0.12 3.75 6.24 86.53 0.54 4.29 16 14 C -0.13 -2.65 4.95 30.68 0.15 -2.50 16 15 C 0.09 1.81 0.91 -10.85 -0.01 1.80 16 16 C 0.08 0.77 7.33 86.48 0.63 1.41 16 17 N -0.72 -10.14 6.41 -590.46 -3.78 -13.92 16 18 C 0.64 16.52 9.16 129.90 1.19 17.71 16 19 O -0.58 -20.45 18.04 19.64 0.35 -20.09 16 20 O -0.33 -8.93 9.76 -48.73 -0.48 -9.41 16 21 C -0.13 -2.65 4.93 30.53 0.15 -2.50 16 22 C 0.12 3.75 6.21 86.38 0.54 4.29 16 23 H 0.30 15.62 8.31 -92.70 -0.77 14.85 16 24 H 0.06 2.01 7.98 -2.38 -0.02 1.99 16 25 H 0.08 2.86 7.11 -2.39 -0.02 2.84 16 26 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.13 0.57 7.71 -2.39 -0.02 0.55 16 29 H 0.13 0.57 7.71 -2.39 -0.02 0.55 16 30 H 0.45 4.01 8.96 -92.70 -0.83 3.18 16 31 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 2.85 7.11 -2.39 -0.02 2.84 16 34 H 0.06 2.00 7.98 -2.39 -0.02 1.98 16 Total: -1.00 -85.23 298.16 -3.21 -88.44 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.31 Total: 16.18 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.32 Total: -22.98 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -5.18 Total: -106.28 kcal Atomic # 8 Polarization: -152.80 SS G_CDS: -4.40 Total: -157.21 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 16 Polarization: 141.84 SS G_CDS: -0.28 Total: 141.56 kcal Total: -85.23 -3.21 -88.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.027 kcal (2) G-P(sol) polarization free energy of solvation -85.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds