Wall clock time and date at job start Fri Apr 10 2020 17:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48723 * 111.01091 * 2 1 4 4 C 1.54384 * 104.51598 * 158.96657 * 3 2 1 5 5 C 1.54257 * 105.14625 * 336.26525 * 4 3 2 6 6 C 1.48561 * 110.99842 * 115.50483 * 2 1 3 7 7 H 1.09000 * 110.41033 * 319.74232 * 6 2 1 8 8 C 1.52995 * 110.40968 * 82.18406 * 6 2 1 9 9 N 1.46507 * 109.47161 * 180.73198 * 8 6 2 10 10 S 1.65596 * 120.00112 * 163.64891 * 9 8 6 11 11 O 1.42100 * 104.27509 * 181.07081 * 10 9 8 12 12 O 1.42103 * 104.27372 * 308.92314 * 10 9 8 13 13 C 1.81393 * 104.45170 * 64.99620 * 10 9 8 14 14 C 1.53006 * 109.47166 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47187 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00021 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00310 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00354 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47012 * 90.00133 * 20 18 16 22 22 H 1.48495 * 109.47298 * 210.00176 * 20 18 16 23 23 H 1.48501 * 109.47071 * 330.00269 * 20 18 16 24 24 H 1.09000 * 109.47384 * 299.26593 * 1 2 3 25 25 H 1.09001 * 109.46875 * 59.26276 * 1 2 3 26 26 H 1.09001 * 109.46983 * 179.26203 * 1 2 3 27 27 H 1.08994 * 110.39405 * 40.24397 * 3 2 1 28 28 H 1.08996 * 110.50675 * 277.74485 * 3 2 1 29 29 H 1.08991 * 110.32266 * 217.31981 * 4 3 2 30 30 H 1.08999 * 110.32275 * 95.20851 * 4 3 2 31 31 H 1.09000 * 110.32746 * 118.84381 * 5 4 3 32 32 H 1.08996 * 110.32726 * 241.05302 * 5 4 3 33 33 H 1.09002 * 109.47351 * 300.72608 * 8 6 2 34 34 H 1.08992 * 109.47577 * 60.72784 * 8 6 2 35 35 H 0.96999 * 119.99236 * 343.64133 * 9 8 6 36 36 H 1.09005 * 109.47388 * 299.99744 * 13 10 9 37 37 H 1.08999 * 109.47733 * 60.00249 * 13 10 9 38 38 H 1.08999 * 109.46769 * 299.99648 * 14 13 10 39 39 H 1.08998 * 109.46985 * 59.99934 * 14 13 10 40 40 H 1.08995 * 109.47351 * 300.00255 * 15 14 13 41 41 H 1.09005 * 109.47022 * 59.99709 * 15 14 13 42 42 H 0.97007 * 120.00580 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0023 1.3883 0.0000 4 6 3.4433 1.2494 0.5364 5 6 3.4432 -0.0559 1.3585 6 6 2.0014 -0.5972 1.2518 7 1 1.4098 -0.2745 2.1085 8 6 2.0106 -2.1239 1.1527 9 7 2.5222 -2.6914 2.4028 10 16 2.2748 -4.2919 2.7479 11 8 2.8743 -4.4721 4.0236 12 8 0.8785 -4.4788 2.5617 13 6 3.2114 -5.1799 1.4733 14 6 3.0597 -6.6874 1.6862 15 6 3.8492 -7.4364 0.6107 16 6 3.7003 -8.9212 0.8208 17 1 3.1021 -9.2935 1.6393 18 6 4.3270 -9.8045 -0.0325 19 7 4.1967 -11.1002 0.1505 20 14 5.3612 -9.1606 -1.4486 21 1 6.7652 -8.9869 -0.9972 22 1 5.3190 -10.1297 -2.5730 23 1 4.8215 -7.8533 -1.9014 24 1 -0.3634 0.5024 0.8965 25 1 -0.3633 0.5253 -0.8833 26 1 -0.3633 -1.0276 -0.0132 27 1 1.4105 2.0225 0.6600 28 1 2.0108 1.7941 -1.0116 29 1 3.6936 2.0978 1.1732 30 1 4.1496 1.1760 -0.2905 31 1 4.1483 -0.7707 0.9341 32 1 3.6936 0.1518 2.3987 33 1 0.9961 -2.4829 0.9793 34 1 2.6508 -2.4306 0.3257 35 1 3.0059 -2.1294 3.0282 36 1 2.8286 -4.9121 0.4884 37 1 4.2646 -4.9074 1.5402 38 1 3.4422 -6.9555 2.6710 39 1 2.0064 -6.9597 1.6190 40 1 3.4664 -7.1682 -0.3739 41 1 4.9026 -7.1641 0.6775 42 1 4.6378 -11.7217 -0.4496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342341186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:19 Heat of formation + Delta-G solvation = -82.566172 kcal Electronic energy + Delta-G solvation = -21435.354281 eV Core-core repulsion = 18155.947501 eV Total energy + Delta-G solvation = -3279.406780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.60876 -36.95376 -35.82911 -35.27059 -34.80111 -32.53570 -32.20584 -29.74299 -28.36912 -26.14432 -24.80631 -23.60270 -21.45954 -20.66860 -20.46404 -19.22663 -17.57888 -16.93132 -16.83008 -16.28454 -15.90404 -15.51466 -15.23483 -14.47644 -14.30386 -14.16457 -14.13172 -14.02763 -13.09151 -12.89023 -12.60921 -12.38709 -12.32745 -12.12802 -11.94967 -11.88963 -11.85306 -11.66642 -11.57466 -11.46579 -11.20910 -10.97687 -10.93978 -10.88589 -10.08420 -9.91941 -9.81064 -9.39148 -9.24286 -8.94739 -8.57948 -6.07602 -4.06893 0.39523 2.74042 3.27632 3.35280 3.37515 3.59725 3.89713 4.16768 4.22886 4.35868 4.41314 4.55967 4.74071 4.80438 4.95465 5.02823 5.07147 5.08616 5.10162 5.21226 5.26233 5.30665 5.42351 5.52377 5.54034 5.59977 5.68076 5.75033 5.78481 5.80350 6.15125 6.27703 6.40450 6.57549 6.67953 6.83740 7.13847 7.27846 7.71983 8.48462 8.96838 9.53567 11.05704 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.003498 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.451056 B = 8002.078761 C = 8689.039489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.510 5.510 3 C 0.033 3.967 4 C -0.125 4.125 5 C -0.125 4.125 6 C 0.055 3.945 7 H 0.062 0.938 8 C 0.128 3.872 9 N -1.125 6.125 10 S 2.605 3.395 11 O -0.961 6.961 12 O -0.960 6.960 13 C -0.615 4.615 14 C -0.098 4.098 15 C -0.005 4.005 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.414 0.586 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.020 0.980 41 H 0.016 0.984 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.104 27.724 0.191 27.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.235 5.235 3 C -0.095 4.095 4 C -0.163 4.163 5 C -0.163 4.163 6 C -0.054 4.054 7 H 0.080 0.920 8 C 0.001 3.999 9 N -0.883 5.883 10 S 2.700 3.300 11 O -0.952 6.952 12 O -0.950 6.950 13 C -0.746 4.746 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.247 0.753 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.034 0.966 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.558 26.828 0.227 27.064 hybrid contribution 0.887 0.961 -0.433 1.378 sum -2.671 27.788 -0.206 27.917 Atomic orbital electron populations 1.22593 0.87501 1.02968 1.00906 1.65228 1.08549 1.15298 1.34398 1.23149 0.95245 0.89743 1.01376 1.22291 0.96623 0.97531 0.99869 1.22414 0.95964 0.97430 1.00494 1.22834 0.96301 0.94277 0.92033 0.92010 1.21146 1.00255 0.93058 0.85425 1.55683 1.72985 1.29226 1.30451 1.05165 0.75591 0.73190 0.76013 1.93587 1.79223 1.84564 1.37798 1.93573 1.29849 1.84641 1.86941 1.30590 1.14908 1.11130 1.18002 1.21315 1.02718 0.87110 1.02573 1.19529 0.94874 0.96178 0.93735 1.21139 1.31825 0.88705 1.14833 0.90735 1.25025 0.96133 0.94736 0.97524 1.69909 1.44099 1.01456 1.38471 0.86774 0.80977 0.79115 0.82389 1.20228 1.21268 1.19012 0.95179 0.91020 0.90590 0.93753 0.89835 0.91311 0.90751 0.90170 0.91037 0.90055 0.90647 0.75278 0.85413 0.85234 0.90996 0.90955 0.96141 0.96607 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.41 60.07 0.57 0.63 16 2 N -0.51 -4.19 5.34 -230.20 -1.23 -5.42 16 3 C 0.03 0.22 6.51 -2.09 -0.01 0.20 16 4 C -0.13 -0.76 6.99 -25.35 -0.18 -0.94 16 5 C -0.12 -0.85 5.97 -25.35 -0.15 -1.00 16 6 C 0.06 0.45 2.45 -66.07 -0.16 0.29 16 7 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16 8 C 0.13 1.19 5.70 -4.04 -0.02 1.17 16 9 N -1.12 -11.15 5.79 -10.61 -0.06 -11.21 16 10 S 2.61 36.20 5.46 -107.50 -0.59 35.61 16 11 O -0.96 -16.24 18.08 -57.54 -1.04 -17.28 16 12 O -0.96 -16.33 17.48 -57.54 -1.01 -17.34 16 13 C -0.61 -8.73 6.07 37.16 0.23 -8.51 16 14 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 15 C 0.00 -0.11 4.04 -27.89 -0.11 -0.22 16 16 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 17 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 20 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 24 H 0.03 0.21 7.97 -51.93 -0.41 -0.21 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.59 7.51 -51.93 -0.39 0.20 16 27 H 0.04 0.27 7.98 -51.93 -0.41 -0.14 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.56 7.81 -51.93 -0.41 0.16 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.82 7.02 -51.93 -0.36 0.46 16 34 H 0.08 0.64 8.07 -51.93 -0.42 0.23 16 35 H 0.41 3.33 8.19 -34.47 -0.28 3.05 16 36 H 0.13 1.57 8.14 -51.92 -0.42 1.15 16 37 H 0.13 1.58 8.14 -51.92 -0.42 1.16 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 41 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -35.51 348.56 -10.24 -45.75 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.26 Total: -1.20 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -0.42 Total: -23.92 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.52 Total: -43.67 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -2.05 Total: -34.62 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 36.20 SS G_CDS: -0.59 Total: 35.61 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.51 -10.24 -45.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342341186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.814 kcal (2) G-P(sol) polarization free energy of solvation -35.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds