Wall clock time and date at job start Fri Apr 10 2020 17:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48723 * 111.01091 * 2 1 4 4 C 1.54384 * 104.51598 * 158.96657 * 3 2 1 5 5 C 1.54257 * 105.14625 * 336.26525 * 4 3 2 6 6 C 1.48561 * 110.99842 * 115.50483 * 2 1 3 7 7 H 1.09000 * 110.41033 * 319.74232 * 6 2 1 8 8 C 1.52995 * 110.40968 * 82.18406 * 6 2 1 9 9 N 1.46507 * 109.47161 * 180.73198 * 8 6 2 10 10 S 1.65596 * 120.00112 * 163.64891 * 9 8 6 11 11 O 1.42100 * 104.27509 * 181.07081 * 10 9 8 12 12 O 1.42103 * 104.27372 * 308.92314 * 10 9 8 13 13 C 1.81393 * 104.45170 * 64.99620 * 10 9 8 14 14 C 1.53006 * 109.47166 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47187 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00021 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00310 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00354 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47012 * 90.00133 * 20 18 16 22 22 H 1.48495 * 109.47298 * 210.00176 * 20 18 16 23 23 H 1.48501 * 109.47071 * 330.00269 * 20 18 16 24 24 H 1.09000 * 109.47384 * 299.26593 * 1 2 3 25 25 H 1.09001 * 109.46875 * 59.26276 * 1 2 3 26 26 H 1.09001 * 109.46983 * 179.26203 * 1 2 3 27 27 H 1.08994 * 110.39405 * 40.24397 * 3 2 1 28 28 H 1.08996 * 110.50675 * 277.74485 * 3 2 1 29 29 H 1.08991 * 110.32266 * 217.31981 * 4 3 2 30 30 H 1.08999 * 110.32275 * 95.20851 * 4 3 2 31 31 H 1.09000 * 110.32746 * 118.84381 * 5 4 3 32 32 H 1.08996 * 110.32726 * 241.05302 * 5 4 3 33 33 H 1.09002 * 109.47351 * 300.72608 * 8 6 2 34 34 H 1.08992 * 109.47577 * 60.72784 * 8 6 2 35 35 H 0.96999 * 119.99236 * 343.64133 * 9 8 6 36 36 H 1.09005 * 109.47388 * 299.99744 * 13 10 9 37 37 H 1.08999 * 109.47733 * 60.00249 * 13 10 9 38 38 H 1.08999 * 109.46769 * 299.99648 * 14 13 10 39 39 H 1.08998 * 109.46985 * 59.99934 * 14 13 10 40 40 H 1.08995 * 109.47351 * 300.00255 * 15 14 13 41 41 H 1.09005 * 109.47022 * 59.99709 * 15 14 13 42 42 H 0.97007 * 120.00580 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0023 1.3883 0.0000 4 6 3.4433 1.2494 0.5364 5 6 3.4432 -0.0559 1.3585 6 6 2.0014 -0.5972 1.2518 7 1 1.4098 -0.2745 2.1085 8 6 2.0106 -2.1239 1.1527 9 7 2.5222 -2.6914 2.4028 10 16 2.2748 -4.2919 2.7479 11 8 2.8743 -4.4721 4.0236 12 8 0.8785 -4.4788 2.5617 13 6 3.2114 -5.1799 1.4733 14 6 3.0597 -6.6874 1.6862 15 6 3.8492 -7.4364 0.6107 16 6 3.7003 -8.9212 0.8208 17 1 3.1021 -9.2935 1.6393 18 6 4.3270 -9.8045 -0.0325 19 7 4.1967 -11.1002 0.1505 20 14 5.3612 -9.1606 -1.4486 21 1 6.7652 -8.9869 -0.9972 22 1 5.3190 -10.1297 -2.5730 23 1 4.8215 -7.8533 -1.9014 24 1 -0.3634 0.5024 0.8965 25 1 -0.3633 0.5253 -0.8833 26 1 -0.3633 -1.0276 -0.0132 27 1 1.4105 2.0225 0.6600 28 1 2.0108 1.7941 -1.0116 29 1 3.6936 2.0978 1.1732 30 1 4.1496 1.1760 -0.2905 31 1 4.1483 -0.7707 0.9341 32 1 3.6936 0.1518 2.3987 33 1 0.9961 -2.4829 0.9793 34 1 2.6508 -2.4306 0.3257 35 1 3.0059 -2.1294 3.0282 36 1 2.8286 -4.9121 0.4884 37 1 4.2646 -4.9074 1.5402 38 1 3.4422 -6.9555 2.6710 39 1 2.0064 -6.9597 1.6190 40 1 3.4664 -7.1682 -0.3739 41 1 4.9026 -7.1641 0.6775 42 1 4.6378 -11.7217 -0.4496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342341186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:19 Heat of formation + Delta-G solvation = -111.111110 kcal Electronic energy + Delta-G solvation = -21436.592082 eV Core-core repulsion = 18155.947501 eV Total energy + Delta-G solvation = -3280.644581 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17074 -38.19220 -37.06502 -36.49596 -36.07014 -34.24298 -33.04366 -30.39197 -30.14344 -26.68906 -25.46355 -25.38359 -22.29883 -21.90744 -21.23231 -20.30817 -18.97064 -18.61821 -17.71891 -17.26574 -16.87742 -16.47122 -16.19099 -16.00440 -15.62320 -15.01517 -14.86972 -14.77958 -14.64966 -14.06968 -13.71988 -13.60277 -13.32018 -13.23319 -13.18549 -13.12950 -13.09244 -12.68754 -12.54825 -12.46396 -12.20445 -12.07839 -11.84192 -11.81961 -11.63464 -11.40614 -11.36228 -11.26490 -10.77056 -10.38867 -9.51549 -8.29508 -6.35498 -0.74041 1.37562 1.40249 1.51917 1.75664 2.37041 2.75557 3.02523 3.05755 3.27729 3.62688 3.64440 3.74916 3.94572 4.04371 4.19424 4.24784 4.35332 4.40990 4.52524 4.53856 4.58522 4.64752 4.74181 4.84319 4.86652 4.96506 4.98290 5.01815 5.05367 5.11094 5.25629 5.31493 5.35179 5.47001 5.63196 5.86273 6.01294 6.12082 6.25741 6.72916 7.29264 8.87555 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.003498 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.451056 B = 8002.078761 C = 8689.039489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.523 5.523 3 C 0.031 3.969 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.055 3.945 7 H 0.059 0.941 8 C 0.122 3.878 9 N -1.107 6.107 10 S 2.628 3.372 11 O -0.993 6.993 12 O -0.994 6.994 13 C -0.609 4.609 14 C -0.105 4.105 15 C -0.005 4.005 16 C -0.544 4.544 17 H 0.029 0.971 18 C 0.000 4.000 19 N -0.953 5.953 20 Si 0.955 3.045 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.238 1.238 24 H 0.032 0.968 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.425 0.575 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.031 0.969 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 30.713 -1.301 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.248 5.248 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.164 4.164 6 C -0.055 4.055 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.869 5.869 10 S 2.724 3.276 11 O -0.983 6.983 12 O -0.984 6.984 13 C -0.740 4.740 14 C -0.144 4.144 15 C -0.044 4.044 16 C -0.582 4.582 17 H 0.048 0.952 18 C -0.196 4.196 19 N -0.594 5.594 20 Si 0.778 3.222 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.161 1.161 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.262 0.738 36 H 0.171 0.829 37 H 0.176 0.824 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.188 29.843 -1.240 29.949 hybrid contribution 0.385 0.022 0.085 0.395 sum -1.803 29.865 -1.155 29.941 Atomic orbital electron populations 1.22605 0.87387 1.02651 1.01445 1.65220 1.08839 1.16348 1.34400 1.23207 0.95624 0.88964 1.01855 1.22301 0.96182 0.97636 0.99998 1.22459 0.94881 0.97717 1.01379 1.22812 0.97302 0.93300 0.92044 0.92295 1.21314 1.00020 0.94055 0.85103 1.55209 1.72938 1.27543 1.31185 1.04219 0.74493 0.73812 0.75111 1.93542 1.79521 1.85502 1.39769 1.93533 1.32047 1.85588 1.87233 1.30496 1.17060 1.07016 1.19444 1.21186 1.01543 0.90638 1.01022 1.19506 0.96445 0.92933 0.95501 1.21572 1.30974 0.92120 1.13580 0.95227 1.26122 0.97725 0.94777 1.01004 1.70084 1.45809 1.03275 1.40201 0.85586 0.79188 0.79485 0.77964 1.18912 1.21145 1.16119 0.94975 0.90173 0.91366 0.93370 0.89387 0.90158 0.90650 0.90102 0.89941 0.91076 0.89267 0.73836 0.82881 0.82414 0.91848 0.91921 0.94937 0.95028 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.41 127.69 1.20 1.31 16 2 N -0.52 -7.55 5.34 -882.23 -4.71 -12.26 16 3 C 0.03 0.34 6.51 86.42 0.56 0.90 16 4 C -0.12 -1.16 6.99 31.49 0.22 -0.94 16 5 C -0.13 -1.35 5.97 31.49 0.19 -1.16 16 6 C 0.06 0.77 2.45 45.06 0.11 0.88 16 7 H 0.06 0.85 7.89 -2.39 -0.02 0.83 16 8 C 0.12 1.98 5.70 86.38 0.49 2.47 16 9 N -1.11 -19.41 5.79 -187.49 -1.09 -20.49 16 10 S 2.63 69.42 5.46 -56.49 -0.31 69.11 16 11 O -0.99 -32.68 18.08 -127.65 -2.31 -34.99 16 12 O -0.99 -33.32 17.48 -127.65 -2.23 -35.55 16 13 C -0.61 -15.65 6.07 71.98 0.44 -15.21 16 14 C -0.10 -3.98 5.16 30.60 0.16 -3.83 16 15 C -0.01 -0.24 4.04 29.85 0.12 -0.12 16 16 C -0.54 -31.69 9.66 25.60 0.25 -31.45 16 17 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 18 C 0.00 0.02 5.47 84.66 0.46 0.48 16 19 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 20 Si 0.96 43.29 27.47 68.60 1.88 45.17 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 24 H 0.03 0.41 7.97 -2.39 -0.02 0.39 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.00 7.51 -2.39 -0.02 0.98 16 27 H 0.05 0.49 7.98 -2.39 -0.02 0.47 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.87 7.81 -2.39 -0.02 0.85 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 1.33 7.02 -2.39 -0.02 1.31 16 34 H 0.09 1.23 8.07 -2.39 -0.02 1.21 16 35 H 0.43 5.77 8.19 -96.75 -0.79 4.98 16 36 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.16 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 41 H 0.03 1.33 7.57 -2.38 -0.02 1.31 16 42 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -78.09 348.56 -4.12 -82.21 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.14 Total: 13.61 kcal Atomic # 6 Polarization: -50.86 SS G_CDS: 4.20 Total: -46.66 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -5.50 Total: -92.91 kcal Atomic # 8 Polarization: -66.00 SS G_CDS: -4.54 Total: -70.54 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Atomic # 16 Polarization: 69.42 SS G_CDS: -0.31 Total: 69.11 kcal Total: -78.09 -4.12 -82.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342341186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.905 kcal (2) G-P(sol) polarization free energy of solvation -78.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds