Wall clock time and date at job start Fri Apr 10 2020 17:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.62974 * 2 1 4 4 C 1.53244 * 109.62864 * 239.61608 * 2 1 3 5 5 N 1.46899 * 109.33953 * 186.45948 * 4 2 1 6 6 C 1.46903 * 110.99776 * 187.25493 * 5 4 2 7 7 C 1.46902 * 111.26806 * 63.10734 * 5 4 2 8 8 C 1.53238 * 109.33952 * 296.89667 * 7 5 4 9 9 N 1.47078 * 108.68713 * 53.72828 * 8 7 5 10 10 S 1.65593 * 120.87985 * 128.91249 * 9 8 7 11 11 O 1.42104 * 104.28138 * 220.09752 * 10 9 8 12 12 O 1.42103 * 104.27846 * 347.95395 * 10 9 8 13 13 C 1.81398 * 104.44973 * 104.02459 * 10 9 8 14 14 C 1.52997 * 109.47353 * 179.97438 * 13 10 9 15 15 C 1.53007 * 109.47283 * 179.97438 * 14 13 10 16 16 C 1.50698 * 109.46965 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00530 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99686 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00068 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99961 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46824 * 59.99992 * 20 18 16 22 22 H 1.48504 * 109.47181 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47036 * 300.00057 * 20 18 16 24 24 H 1.09005 * 109.47274 * 172.22328 * 1 2 3 25 25 H 1.08998 * 109.47289 * 292.22353 * 1 2 3 26 26 H 1.08998 * 109.47378 * 52.22569 * 1 2 3 27 27 H 1.09007 * 109.49232 * 66.50329 * 4 2 1 28 28 H 1.09001 * 109.51953 * 306.43764 * 4 2 1 29 29 H 1.08998 * 109.47008 * 291.74144 * 6 5 4 30 30 H 1.09000 * 109.47053 * 51.74299 * 6 5 4 31 31 H 1.08999 * 109.46791 * 171.74442 * 6 5 4 32 32 H 1.08999 * 109.48979 * 176.93280 * 7 5 4 33 33 H 1.09006 * 109.49222 * 56.85619 * 7 5 4 34 34 H 1.08996 * 109.62543 * 173.54245 * 8 7 5 35 35 H 1.09005 * 109.62331 * 293.92294 * 8 7 5 36 36 H 1.09004 * 109.46936 * 300.00180 * 13 10 9 37 37 H 1.09002 * 109.46887 * 59.99965 * 13 10 9 38 38 H 1.08995 * 109.47462 * 299.99803 * 14 13 10 39 39 H 1.09002 * 109.47019 * 60.00209 * 14 13 10 40 40 H 1.08995 * 109.46944 * 300.00406 * 15 14 13 41 41 H 1.09002 * 109.46688 * 60.00293 * 15 14 13 42 42 H 0.96999 * 119.99792 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7301 -1.2451 5 7 3.5054 -0.8623 -1.1624 6 6 4.0568 -1.4019 -2.4126 7 6 3.9016 -1.6871 -0.0132 8 6 3.4628 -0.9964 1.2824 9 7 2.0246 -0.7011 1.1954 10 16 0.9897 -1.1513 2.4072 11 8 -0.1711 -1.6067 1.7257 12 8 1.7580 -2.0325 3.2149 13 6 0.6407 0.3889 3.2997 14 6 -0.3174 0.1015 4.4575 15 6 -0.6113 1.4005 5.2107 16 6 -1.5545 1.1173 6.3514 17 1 -1.9085 0.1114 6.5224 18 6 -1.9654 2.1424 7.1768 19 7 -1.5346 3.3674 6.9683 20 14 -3.1351 1.7916 8.5904 21 1 -2.5120 0.8126 9.5170 22 1 -3.4212 3.0525 9.3208 23 1 -4.4023 1.2307 8.0567 24 1 -0.3634 -1.0182 -0.1391 25 1 -0.3634 0.3887 0.9513 26 1 -0.3634 0.6295 -0.8123 27 1 1.7810 -0.1600 -2.1361 28 1 1.5923 -1.7202 -1.2999 29 1 3.7430 -2.4391 -2.5303 30 1 3.6912 -0.8139 -3.2545 31 1 5.1452 -1.3529 -2.3806 32 1 4.9845 -1.8112 -0.0106 33 1 3.4233 -2.6640 -0.0845 34 1 3.6508 -1.6551 2.1303 35 1 4.0201 -0.0682 1.4093 36 1 1.5709 0.8008 3.6911 37 1 0.1829 1.1072 2.6196 38 1 -1.2475 -0.3101 4.0658 39 1 0.1400 -0.6170 5.1377 40 1 0.3190 1.8118 5.6024 41 1 -1.0685 2.1193 4.5306 42 1 -1.8235 4.0885 7.5493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348274457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:36 Heat of formation + Delta-G solvation = -89.531675 kcal Electronic energy + Delta-G solvation = -22253.442758 eV Core-core repulsion = 18973.733932 eV Total energy + Delta-G solvation = -3279.708827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13600 -38.43872 -37.09278 -36.49664 -35.90190 -34.20499 -33.37471 -29.72238 -29.20116 -27.98135 -25.66634 -24.84635 -23.39931 -22.35445 -21.66677 -19.82985 -18.62999 -18.19734 -17.66368 -17.24674 -16.50802 -16.43918 -16.24089 -15.95452 -15.66080 -15.55936 -15.23768 -14.49978 -14.13139 -14.05674 -13.81672 -13.48019 -13.37279 -13.27199 -13.13598 -13.07663 -12.97132 -12.74445 -12.68190 -12.56334 -12.38587 -12.15218 -12.06661 -11.92543 -11.75201 -11.41082 -11.39391 -11.08077 -10.58202 -10.07105 -9.29932 -8.23472 -6.34963 -0.79095 1.39547 1.42281 1.50264 1.61951 2.39164 2.74765 2.93870 3.09806 3.15273 3.45437 3.74495 3.84213 3.89765 4.07557 4.17639 4.25900 4.35471 4.37418 4.54361 4.58431 4.63035 4.67074 4.73129 4.74963 4.78714 4.88948 4.97846 5.01309 5.05638 5.07158 5.13797 5.43085 5.48998 5.59965 5.63027 5.77800 6.02078 6.08437 6.18125 6.80273 7.34401 8.87897 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.037557 B = 0.003434 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.355354 B = 8151.325079 C = 8270.450913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.153 3.847 3 H 0.099 0.901 4 C 0.050 3.950 5 N -0.549 5.549 6 C 0.025 3.975 7 C 0.045 3.955 8 C 0.112 3.888 9 N -0.999 5.999 10 S 2.619 3.381 11 O -0.976 6.976 12 O -0.992 6.992 13 C -0.610 4.610 14 C -0.104 4.104 15 C 0.032 3.968 16 C -0.555 4.555 17 H 0.060 0.940 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.963 3.037 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.267 1.267 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.029 0.971 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.026 0.974 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.652 -7.158 -19.646 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.048 3.952 3 H 0.117 0.883 4 C -0.080 4.080 5 N -0.273 5.273 6 C -0.123 4.123 7 C -0.085 4.085 8 C -0.013 4.013 9 N -0.838 5.838 10 S 2.717 3.283 11 O -0.966 6.966 12 O -0.982 6.982 13 C -0.741 4.741 14 C -0.143 4.143 15 C -0.006 4.006 16 C -0.593 4.593 17 H 0.078 0.922 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.787 3.213 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.192 1.192 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.045 0.955 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.020 0.980 41 H 0.022 0.978 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.544 -7.420 -19.365 23.735 hybrid contribution -0.899 -0.049 0.933 1.296 sum 10.646 -7.468 -18.433 22.558 Atomic orbital electron populations 1.22697 0.93305 1.05153 1.03613 1.21282 0.93690 0.96877 0.83349 0.88283 1.22525 0.87564 0.99506 0.98380 1.61924 1.10495 1.50837 1.04064 1.22431 1.01189 0.97726 0.90918 1.22472 1.02052 0.93761 0.90182 1.21761 0.78922 1.01999 0.98610 1.57793 1.19199 1.74541 1.32309 1.04610 0.73364 0.76698 0.73589 1.93600 1.51269 1.80302 1.71448 1.93481 1.70874 1.63076 1.70769 1.30618 1.10067 1.22175 1.11196 1.21301 0.97378 1.00708 0.94953 1.18946 0.95483 0.92099 0.94054 1.21708 1.28595 0.94966 1.14006 0.92170 1.25944 0.98156 0.94795 1.00620 1.70066 1.45922 1.00831 1.40119 0.85528 0.79215 0.77711 0.78802 1.19219 1.20526 1.19176 0.90117 0.93045 0.88204 0.87464 0.95304 0.95881 0.90201 0.90116 0.87344 0.95522 0.88695 0.88972 0.84074 0.83825 0.91487 0.91807 0.98002 0.97823 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.02 7.61 71.98 0.55 -3.47 16 2 C 0.15 2.98 3.67 44.95 0.16 3.14 16 3 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 4 C 0.05 0.84 4.91 86.38 0.42 1.27 16 5 N -0.55 -8.87 4.88 -921.44 -4.50 -13.37 16 6 C 0.03 0.29 9.62 127.69 1.23 1.52 16 7 C 0.04 0.76 5.62 86.38 0.49 1.25 16 8 C 0.11 2.21 6.65 86.35 0.57 2.78 16 9 N -1.00 -23.13 3.26 -489.76 -1.59 -24.72 16 10 S 2.62 79.04 4.85 -56.49 -0.27 78.77 16 11 O -0.98 -33.21 13.68 -127.65 -1.75 -34.96 16 12 O -0.99 -35.25 16.31 -127.65 -2.08 -37.33 16 13 C -0.61 -19.22 5.92 71.98 0.43 -18.80 16 14 C -0.10 -4.34 5.16 30.60 0.16 -4.18 16 15 C 0.03 1.70 4.97 29.85 0.15 1.85 16 16 C -0.55 -31.88 9.11 25.60 0.23 -31.65 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 18 C 0.00 0.18 5.46 84.65 0.46 0.65 16 19 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 20 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 H 0.08 2.04 6.44 -2.38 -0.02 2.02 16 25 H 0.05 1.22 4.86 -2.39 -0.01 1.20 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.11 1.34 8.01 -2.38 -0.02 1.32 16 28 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 29 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.08 0.76 8.00 -2.39 -0.02 0.74 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.35 8.11 -2.39 -0.02 1.33 16 33 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.09 2.02 6.61 -2.39 -0.02 2.01 16 35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.14 4.02 8.14 -2.39 -0.02 4.00 16 37 H 0.14 4.02 6.63 -2.39 -0.02 4.01 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -72.25 338.24 -2.06 -74.31 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.98 Total: 12.35 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 4.85 Total: -45.64 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -5.81 Total: -93.88 kcal Atomic # 8 Polarization: -68.46 SS G_CDS: -3.83 Total: -72.29 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 79.04 SS G_CDS: -0.27 Total: 78.77 kcal Total: -72.25 -2.06 -74.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348274457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.221 kcal (2) G-P(sol) polarization free energy of solvation -72.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds