Wall clock time and date at job start Fri Apr 10 2020 17:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.62563 * 2 1 4 4 C 1.53234 * 109.62893 * 120.38946 * 2 1 3 5 5 N 1.46911 * 109.33679 * 173.53918 * 4 2 1 6 6 C 1.46898 * 110.99430 * 172.74848 * 5 4 2 7 7 C 1.46897 * 111.26887 * 296.89414 * 5 4 2 8 8 C 1.53236 * 109.33831 * 63.10730 * 7 5 4 9 9 N 1.47080 * 109.62673 * 239.62030 * 2 1 3 10 10 S 1.65604 * 120.88230 * 9.10098 * 9 2 1 11 11 O 1.42102 * 104.27744 * 192.51472 * 10 9 2 12 12 O 1.42094 * 104.27673 * 320.37574 * 10 9 2 13 13 C 1.81401 * 104.44796 * 76.44576 * 10 9 2 14 14 C 1.52993 * 109.47239 * 179.97438 * 13 10 9 15 15 C 1.52999 * 109.47467 * 179.97438 * 14 13 10 16 16 C 1.50694 * 109.47247 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00305 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00074 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00254 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99728 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47251 * 89.99922 * 20 18 16 22 22 H 1.48499 * 109.46759 * 209.99738 * 20 18 16 23 23 H 1.48492 * 109.47148 * 329.99515 * 20 18 16 24 24 H 1.08999 * 109.46979 * 308.01717 * 1 2 3 25 25 H 1.09003 * 109.47105 * 188.01772 * 1 2 3 26 26 H 1.08998 * 109.47504 * 68.01989 * 1 2 3 27 27 H 1.09000 * 109.49525 * 293.49375 * 4 2 1 28 28 H 1.08997 * 109.49400 * 53.58012 * 4 2 1 29 29 H 1.08997 * 109.47840 * 60.00214 * 6 5 4 30 30 H 1.09005 * 109.46603 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.46982 * 299.99381 * 6 5 4 32 32 H 1.08995 * 109.49401 * 183.06803 * 7 5 4 33 33 H 1.09006 * 109.49402 * 303.12149 * 7 5 4 34 34 H 1.08994 * 109.63287 * 65.87981 * 8 7 5 35 35 H 1.09006 * 109.62882 * 186.26808 * 8 7 5 36 36 H 1.08998 * 109.46930 * 300.00116 * 13 10 9 37 37 H 1.09004 * 109.46948 * 60.00022 * 13 10 9 38 38 H 1.09003 * 109.47455 * 300.00484 * 14 13 10 39 39 H 1.09004 * 109.46992 * 60.00221 * 14 13 10 40 40 H 1.09001 * 109.47074 * 299.99905 * 15 14 13 41 41 H 1.08993 * 109.47142 * 59.99846 * 15 14 13 42 42 H 0.97001 * 120.00204 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7301 1.2450 5 7 3.5056 -0.8624 1.1622 6 6 4.0569 -1.4021 2.4123 7 6 3.9016 -1.6870 0.0128 8 6 3.4629 -0.9961 -1.2826 9 7 2.0240 -0.7006 -1.1951 10 16 0.9877 -1.1500 -2.4062 11 8 1.7533 -2.0353 -3.2120 12 8 -0.1745 -1.6001 -1.7238 13 6 0.6437 0.3895 -3.3019 14 6 -0.3141 0.1027 -4.4599 15 6 -0.6048 1.4012 -5.2150 16 6 -1.5488 1.1187 -6.3552 17 1 -1.9054 0.1134 -6.5247 18 6 -1.9572 2.1436 -7.1822 19 7 -2.7806 1.8970 -8.1775 20 14 -1.3398 3.8822 -6.8895 21 1 -0.0856 4.0975 -7.6548 22 1 -2.3676 4.8548 -7.3400 23 1 -1.0756 4.0764 -5.4413 24 1 -0.3633 0.6329 0.8096 25 1 -0.3633 -1.0176 0.1433 26 1 -0.3634 0.3846 -0.9529 27 1 1.7812 -0.1602 2.1359 28 1 1.5924 -1.7203 1.2990 29 1 3.6273 -2.3853 2.6043 30 1 5.1398 -1.4893 2.3239 31 1 3.8128 -0.7316 3.2363 32 1 4.9845 -1.8111 0.0102 33 1 3.4237 -2.6641 0.0843 34 1 4.0176 -0.0662 -1.4077 35 1 3.6540 -1.6533 -2.1310 36 1 0.1883 1.1107 -2.6233 37 1 1.5753 0.7976 -3.6940 38 1 0.1417 -0.6185 -5.1384 39 1 -1.2458 -0.3057 -4.0681 40 1 -1.0609 2.1219 -4.5363 41 1 0.3265 1.8100 -5.6067 42 1 -3.0677 2.6180 -8.7595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348274458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:38 Heat of formation + Delta-G solvation = -86.884840 kcal Electronic energy + Delta-G solvation = -22315.328253 eV Core-core repulsion = 19035.734202 eV Total energy + Delta-G solvation = -3279.594051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.13596 -38.44163 -37.08974 -36.53625 -35.90044 -34.28222 -33.37137 -30.20620 -29.21095 -27.99156 -25.47462 -24.80191 -23.37514 -22.22131 -21.66195 -19.83414 -18.98732 -18.20159 -17.67508 -17.32902 -16.44769 -16.29546 -16.23260 -15.95855 -15.66619 -15.57795 -15.25600 -14.84345 -14.13615 -14.06257 -13.85077 -13.48830 -13.45471 -13.27863 -13.24326 -13.13650 -13.05290 -12.71321 -12.66037 -12.45423 -12.38117 -12.06566 -11.92850 -11.85379 -11.66497 -11.43603 -11.41720 -11.21545 -10.78621 -10.07110 -9.30986 -8.30967 -6.37175 -0.79408 1.36489 1.38963 1.50726 1.62528 2.35718 2.76020 2.93582 3.04099 3.15511 3.44478 3.71256 3.84110 3.89793 4.07580 4.17966 4.25413 4.31107 4.37705 4.53279 4.56310 4.61815 4.66805 4.73189 4.73739 4.77762 4.83469 4.92692 4.97521 5.04556 5.05051 5.13786 5.31277 5.43367 5.50382 5.61113 5.63074 6.01500 6.07393 6.23844 6.70914 7.27585 8.86084 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.031406 B = 0.003728 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.321958 B = 7508.722233 C = 7680.717994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.154 3.846 3 H 0.104 0.896 4 C 0.048 3.952 5 N -0.547 5.547 6 C 0.025 3.975 7 C 0.043 3.957 8 C 0.113 3.887 9 N -0.998 5.998 10 S 2.612 3.388 11 O -0.994 6.994 12 O -0.979 6.979 13 C -0.610 4.610 14 C -0.102 4.102 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.029 0.971 18 C 0.001 3.999 19 N -0.952 5.952 20 Si 0.955 3.045 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.238 1.238 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.026 0.974 29 H 0.021 0.979 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.024 0.976 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.328 -1.554 24.034 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.049 3.951 3 H 0.121 0.879 4 C -0.081 4.081 5 N -0.272 5.272 6 C -0.123 4.123 7 C -0.086 4.086 8 C -0.012 4.012 9 N -0.838 5.838 10 S 2.711 3.289 11 O -0.984 6.984 12 O -0.969 6.969 13 C -0.741 4.741 14 C -0.141 4.141 15 C -0.043 4.043 16 C -0.583 4.583 17 H 0.048 0.952 18 C -0.196 4.196 19 N -0.593 5.593 20 Si 0.778 3.222 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.161 1.161 24 H 0.118 0.882 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.042 0.958 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.136 -1.930 23.685 28.724 hybrid contribution -0.627 0.096 -0.635 0.898 sum 15.509 -1.833 23.050 27.842 Atomic orbital electron populations 1.22701 0.93311 1.05042 1.03719 1.21277 0.93656 0.96974 0.83211 0.87856 1.22533 0.87526 0.99471 0.98582 1.61940 1.10499 1.50719 1.04002 1.22432 1.00812 0.98026 0.91045 1.22485 1.02035 0.93771 0.90347 1.21770 0.78898 1.02089 0.98440 1.57791 1.19160 1.74579 1.32288 1.04769 0.73378 0.77027 0.73722 1.93487 1.71027 1.63041 1.70868 1.93608 1.51218 1.80588 1.71467 1.30617 1.10373 1.22101 1.11042 1.21167 0.97506 1.00437 0.94990 1.19494 0.96090 0.94291 0.94384 1.21550 1.28074 0.95373 1.13304 0.95244 1.26119 0.94669 1.04572 0.94201 1.70081 1.35609 1.34704 1.18879 0.85588 0.78355 0.77702 0.80603 1.18943 1.21013 1.16136 0.88193 0.90455 0.92751 0.87481 0.95542 0.96046 0.90138 0.90105 0.87347 0.95767 0.88653 0.88761 0.82921 0.83024 0.92134 0.91856 0.94882 0.95164 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.68 7.61 71.98 0.55 -3.13 16 2 C 0.15 2.69 3.66 44.96 0.16 2.86 16 3 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.05 0.77 4.91 86.38 0.42 1.19 16 5 N -0.55 -8.24 4.88 -921.47 -4.50 -12.74 16 6 C 0.02 0.27 9.58 127.69 1.22 1.49 16 7 C 0.04 0.69 5.62 86.38 0.49 1.18 16 8 C 0.11 2.04 6.65 86.33 0.57 2.61 16 9 N -1.00 -21.26 3.26 -489.75 -1.60 -22.85 16 10 S 2.61 74.77 4.86 -56.49 -0.27 74.50 16 11 O -0.99 -34.47 16.33 -127.65 -2.08 -36.55 16 12 O -0.98 -32.51 13.65 -127.65 -1.74 -34.26 16 13 C -0.61 -16.80 5.92 71.98 0.43 -16.38 16 14 C -0.10 -3.97 5.16 30.59 0.16 -3.81 16 15 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 16 C -0.55 -31.87 9.66 25.60 0.25 -31.62 16 17 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 18 C 0.00 0.06 5.47 84.66 0.46 0.53 16 19 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 20 Si 0.96 43.35 27.47 68.60 1.88 45.23 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 24 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.88 6.45 -2.39 -0.02 1.86 16 26 H 0.05 1.15 4.85 -2.39 -0.01 1.13 16 27 H 0.11 1.23 8.11 -2.39 -0.02 1.21 16 28 H 0.03 0.50 8.12 -2.39 -0.02 0.49 16 29 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.08 0.71 8.08 -2.38 -0.02 0.69 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.11 1.24 8.06 -2.39 -0.02 1.22 16 33 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.88 6.64 -2.38 -0.02 1.86 16 36 H 0.15 3.44 6.66 -2.39 -0.02 3.43 16 37 H 0.15 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 40 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 41 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 42 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -76.29 334.75 -2.25 -78.54 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.92 Total: 13.38 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 4.84 Total: -45.14 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -5.80 Total: -95.70 kcal Atomic # 8 Polarization: -66.98 SS G_CDS: -3.83 Total: -70.81 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.23 kcal Atomic # 16 Polarization: 74.77 SS G_CDS: -0.27 Total: 74.50 kcal Total: -76.29 -2.25 -78.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348274458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.345 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds