Wall clock time and date at job start Fri Apr 10 2020 17:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47308 * 2 1 4 4 C 1.50699 * 109.47180 * 239.99613 * 2 1 3 5 5 H 1.07992 * 120.00337 * 240.00269 * 4 2 1 6 6 C 1.37888 * 119.99751 * 60.00256 * 4 2 1 7 7 N 1.31509 * 119.99644 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99819 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47548 * 59.99864 * 8 6 4 10 10 H 1.48500 * 109.46875 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47213 * 299.99864 * 8 6 4 12 12 N 1.46901 * 109.46920 * 120.00104 * 2 1 3 13 13 C 1.46895 * 111.00281 * 58.94999 * 12 2 1 14 14 C 1.38584 * 110.99979 * 294.99491 * 12 2 1 15 15 N 1.31216 * 126.37592 * 359.96344 * 14 12 2 16 16 N 1.28512 * 110.09608 * 179.76115 * 15 14 12 17 17 C 1.31214 * 109.96347 * 0.45203 * 16 15 14 18 18 C 1.47986 * 126.47224 * 179.82423 * 17 16 15 19 19 C 1.41014 * 126.25863 * 164.83569 * 18 17 16 20 20 N 1.30636 * 108.08655 * 180.28891 * 19 18 17 21 21 N 1.39997 * 108.58720 * 359.75134 * 20 19 18 22 22 C 1.46494 * 125.87097 * 180.02562 * 21 20 19 23 23 C 1.34826 * 108.25796 * 359.97438 * 21 20 19 24 24 N 1.36645 * 126.38477 * 180.02562 * 14 12 2 25 25 C 1.46505 * 127.17706 * 359.97438 * 24 14 12 26 26 H 1.09003 * 109.46830 * 59.99563 * 1 2 3 27 27 H 1.08999 * 109.47308 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46839 * 300.00524 * 1 2 3 29 29 H 0.97003 * 119.99575 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47274 * 296.04718 * 13 12 2 31 31 H 1.08998 * 109.47051 * 56.04598 * 13 12 2 32 32 H 1.08996 * 109.47254 * 176.04657 * 13 12 2 33 33 H 1.08001 * 125.95536 * 0.02562 * 19 18 17 34 34 H 1.09002 * 109.47009 * 269.96714 * 22 21 20 35 35 H 1.08997 * 109.47537 * 29.97101 * 22 21 20 36 36 H 1.09004 * 109.47411 * 149.97416 * 22 21 20 37 37 H 1.08002 * 126.20704 * 179.97438 * 23 21 20 38 38 H 1.08997 * 109.47570 * 270.00749 * 25 24 14 39 39 H 1.09009 * 109.46414 * 30.00573 * 25 24 14 40 40 H 1.08996 * 109.46780 * 149.99512 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6698 -0.0022 2.3491 15 7 0.9943 1.1212 2.4070 16 7 0.8419 1.4821 3.6310 17 6 1.4196 0.6154 4.4289 18 6 1.4695 0.6773 5.9066 19 6 1.8177 -0.3783 6.7743 20 7 1.7389 0.0626 8.0015 21 7 1.3466 1.4061 7.9686 22 6 1.1429 2.2697 9.1343 23 6 1.1897 1.7689 6.6796 24 7 1.9649 -0.3641 3.6333 25 6 2.7075 -1.5487 4.0708 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7082 1.1607 -3.4844 30 1 0.4419 -2.0730 1.3348 31 1 1.8166 -2.5950 0.3319 32 1 1.9616 -2.5868 2.1059 33 1 2.0964 -1.3783 6.4765 34 1 0.1062 2.1974 9.4633 35 1 1.8032 1.9524 9.9414 36 1 1.3676 3.3019 8.8656 37 1 0.8914 2.7437 6.3230 38 1 2.0136 -2.3738 4.2314 39 1 3.4317 -1.8268 3.3050 40 1 3.2299 -1.3268 5.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349756068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:40 Heat of formation + Delta-G solvation = 165.535354 kcal Electronic energy + Delta-G solvation = -23162.647075 eV Core-core repulsion = 19823.140336 eV Total energy + Delta-G solvation = -3339.506739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.155 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.78071 -42.12570 -39.02457 -36.05084 -34.86953 -34.18677 -32.41191 -30.74444 -29.88264 -28.60898 -27.82040 -27.23131 -26.49870 -23.71171 -23.26940 -22.03165 -21.36218 -20.76149 -18.39639 -18.27577 -17.39042 -17.33966 -17.06747 -16.37738 -16.32801 -16.01522 -15.36748 -15.18010 -14.90473 -14.48744 -14.20159 -14.05859 -13.73211 -13.60415 -13.35330 -13.27121 -13.02004 -12.90258 -12.63169 -12.46324 -12.32979 -12.06820 -12.02650 -11.92788 -11.39393 -11.13452 -10.89143 -10.84038 -10.51392 -10.47945 -9.73165 -8.66265 -8.09685 -6.24883 0.42835 0.96818 1.29659 1.47108 1.49638 1.56539 1.57542 1.59989 2.30056 2.44543 3.06548 3.20064 3.37801 3.60380 3.85500 3.88310 4.13512 4.19883 4.28075 4.35580 4.47548 4.52728 4.54794 4.64225 4.69097 4.72292 4.74467 4.93619 5.03322 5.08226 5.12441 5.19642 5.36445 5.48911 5.62998 5.66226 5.89462 5.91895 6.10561 6.24048 6.52499 6.62171 6.84502 7.43828 7.92687 8.96980 Molecular weight = 290.16amu Principal moments of inertia in cm(-1) A = 0.041881 B = 0.003475 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.398705 B = 8056.431270 C = 8513.147324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.241 3.759 3 H 0.005 0.995 4 C -0.526 4.526 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.970 3.030 9 H -0.264 1.264 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.454 5.454 13 C 0.031 3.969 14 C 0.367 3.633 15 N -0.363 5.363 16 N -0.327 5.327 17 C 0.256 3.744 18 C -0.191 4.191 19 C 0.069 3.931 20 N -0.311 5.311 21 N -0.366 5.366 22 C 0.090 3.910 23 C 0.114 3.886 24 N -0.484 5.484 25 C 0.062 3.938 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.032 0.968 29 H 0.263 0.737 30 H 0.024 0.976 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.210 0.790 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.202 0.798 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 -4.120 22.773 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.135 3.865 3 H 0.023 0.977 4 C -0.564 4.564 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.177 5.177 13 C -0.116 4.116 14 C 0.010 3.990 15 N -0.207 5.207 16 N -0.167 5.167 17 C -0.011 4.011 18 C -0.206 4.206 19 C -0.118 4.118 20 N -0.132 5.132 21 N -0.146 5.146 22 C -0.049 4.049 23 C -0.038 4.038 24 N -0.180 5.180 25 C -0.079 4.079 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.227 0.773 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.219 0.781 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.398 -3.040 23.510 23.827 hybrid contribution -0.050 -0.778 -1.739 1.906 sum 2.348 -3.818 21.771 22.228 Atomic orbital electron populations 1.22177 0.99341 0.98836 1.00906 1.18921 0.90818 0.92659 0.84070 0.97747 1.21314 1.31835 1.13216 0.90075 0.90907 1.25798 0.95089 0.95678 1.02189 1.70082 1.37272 1.24140 1.24325 0.85435 0.78685 0.78698 0.77731 1.18887 1.21398 1.19546 1.59200 1.55834 1.04152 0.98488 1.22554 0.97936 0.86433 1.04641 1.23088 0.96396 0.94636 0.84896 1.74616 1.19613 1.13843 1.12632 1.74123 1.21594 1.24808 0.96162 1.21948 0.98739 0.88155 0.92298 1.17403 1.20283 0.96846 0.86034 1.24358 0.98558 1.00244 0.88685 1.77213 1.22505 0.92061 1.21377 1.48766 1.50708 1.08797 1.06329 1.22355 1.04489 0.93274 0.84826 1.22820 0.96991 1.00269 0.83716 1.46176 1.44885 1.22646 1.04308 1.22617 0.97306 0.84467 1.03495 0.91890 0.95088 0.94868 0.92828 0.95735 0.89149 0.88837 0.77325 0.89002 0.88113 0.86659 0.78135 0.87807 0.88394 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.20 8.26 71.98 0.59 -7.61 16 2 C 0.24 12.97 2.03 44.17 0.09 13.06 16 3 H 0.00 0.29 7.95 -2.39 -0.02 0.27 16 4 C -0.53 -28.67 7.88 25.60 0.20 -28.47 16 5 H 0.07 3.74 6.77 -2.91 -0.02 3.72 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -54.46 11.32 21.45 0.24 -54.22 16 8 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 9 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 N -0.45 -20.12 4.80 -710.83 -3.41 -23.54 16 13 C 0.03 1.10 8.60 127.69 1.10 2.20 16 14 C 0.37 15.82 6.76 260.02 1.76 17.58 16 15 N -0.36 -17.76 9.29 -57.88 -0.54 -18.30 16 16 N -0.33 -14.06 12.22 -50.78 -0.62 -14.68 16 17 C 0.26 8.73 7.91 136.30 1.08 9.81 16 18 C -0.19 -4.88 6.04 -20.38 -0.12 -5.00 16 19 C 0.07 1.41 10.75 85.55 0.92 2.33 16 20 N -0.31 -6.53 12.53 -56.36 -0.71 -7.24 16 21 N -0.37 -6.42 4.00 -368.54 -1.47 -7.90 16 22 C 0.09 0.67 11.46 127.77 1.46 2.13 16 23 C 0.11 2.39 11.45 83.86 0.96 3.35 16 24 N -0.48 -15.87 3.23 -539.85 -1.74 -17.62 16 25 C 0.06 1.22 8.36 127.77 1.07 2.29 16 26 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 27 H 0.03 1.53 6.48 -2.39 -0.02 1.52 16 28 H 0.03 1.77 5.88 -2.39 -0.01 1.76 16 29 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.02 0.91 6.51 -2.39 -0.02 0.89 16 31 H 0.09 3.31 6.41 -2.39 -0.02 3.29 16 32 H 0.09 2.45 5.40 -2.39 -0.01 2.44 16 33 H 0.21 2.89 6.14 -2.91 -0.02 2.87 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 37 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.10 1.48 7.85 -2.39 -0.02 1.46 16 39 H 0.10 1.94 7.57 -2.38 -0.02 1.92 16 40 H 0.11 1.61 6.06 -2.39 -0.01 1.59 16 Total: -1.00 -79.13 322.93 4.40 -74.73 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.07 Total: 10.87 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 9.56 Total: 12.78 kcal Atomic # 7 Polarization: -135.23 SS G_CDS: -8.26 Total: -143.49 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -79.13 4.40 -74.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349756068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.267 kcal (2) G-P(sol) polarization free energy of solvation -79.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds