Wall clock time and date at job start Fri Apr 10 2020 17:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.62170 * 2 1 4 4 C 1.53240 * 109.79028 * 239.51529 * 2 1 3 5 5 N 1.46900 * 109.33897 * 186.36664 * 4 2 1 6 6 C 1.46897 * 111.00042 * 187.25171 * 5 4 2 7 7 C 1.46901 * 111.26809 * 63.09928 * 5 4 2 8 8 H 1.09002 * 109.48797 * 56.85796 * 7 5 4 9 9 C 1.53003 * 109.48864 * 176.93394 * 7 5 4 10 10 C 1.53236 * 109.34300 * 296.89470 * 7 5 4 11 11 N 1.47076 * 108.51930 * 53.83106 * 10 7 5 12 12 S 1.65600 * 120.88182 * 128.83367 * 11 10 7 13 13 O 1.42101 * 104.28092 * 219.92865 * 12 11 10 14 14 O 1.42101 * 104.27780 * 347.78947 * 12 11 10 15 15 C 1.81400 * 104.44901 * 103.85456 * 12 11 10 16 16 C 1.53002 * 109.47514 * 179.97438 * 15 12 11 17 17 C 1.50696 * 109.47509 * 179.97438 * 16 15 12 18 18 H 1.07999 * 119.99630 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99962 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00070 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00174 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47179 * 90.00313 * 21 19 17 23 23 H 1.48504 * 109.47279 * 210.00733 * 21 19 17 24 24 H 1.48499 * 109.47013 * 330.00145 * 21 19 17 25 25 H 1.09003 * 109.47152 * 291.67049 * 1 2 3 26 26 H 1.09003 * 109.46927 * 51.67299 * 1 2 3 27 27 H 1.09004 * 109.46642 * 171.66679 * 1 2 3 28 28 H 1.08997 * 109.48648 * 306.32264 * 4 2 1 29 29 H 1.08994 * 109.49331 * 66.40132 * 4 2 1 30 30 H 1.08996 * 109.47001 * 295.70186 * 6 5 4 31 31 H 1.09006 * 109.46652 * 55.69596 * 6 5 4 32 32 H 1.08990 * 109.47296 * 175.69511 * 6 5 4 33 33 H 1.09004 * 109.46693 * 179.86837 * 9 7 5 34 34 H 1.08996 * 109.47575 * 299.86837 * 9 7 5 35 35 H 1.09000 * 109.46951 * 59.87088 * 9 7 5 36 36 H 1.08993 * 109.63240 * 294.12178 * 10 7 5 37 37 H 1.08996 * 109.62708 * 173.53752 * 10 7 5 38 38 H 1.09002 * 109.47614 * 300.00362 * 15 12 11 39 39 H 1.08997 * 109.47213 * 60.00585 * 15 12 11 40 40 H 1.08995 * 109.47411 * 300.00984 * 16 15 12 41 41 H 1.09011 * 109.46479 * 60.00024 * 16 15 12 42 42 H 0.96995 * 119.99951 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0489 -0.7315 -1.2426 5 7 3.5098 -0.8595 -1.1571 6 6 4.0648 -1.4005 -2.4050 7 6 3.9063 -1.6804 -0.0052 8 1 3.4308 -2.6588 -0.0750 9 6 5.4268 -1.8504 0.0013 10 6 3.4636 -0.9878 1.2880 11 7 2.0242 -0.7007 1.1950 12 16 0.9872 -1.1539 2.4040 13 8 -0.1701 -1.6134 1.7193 14 8 1.7561 -2.0322 3.2143 15 6 0.6305 0.3854 3.2951 16 6 -0.3300 0.0953 4.4502 17 6 -0.6259 1.3739 5.1908 18 1 -0.1744 2.3009 4.8694 19 6 -1.4730 1.3604 6.2785 20 7 -1.7316 2.4764 6.9246 21 14 -2.2544 -0.2428 6.8338 22 1 -1.3717 -0.9059 7.8268 23 1 -3.5739 0.0385 7.4544 24 1 -2.4392 -1.1355 5.6616 25 1 -0.3633 0.3795 0.9551 26 1 -0.3633 0.6373 -0.8062 27 1 -0.3633 -1.0169 -0.1489 28 1 1.5993 -1.7230 -1.2950 29 1 1.7850 -0.1644 -2.1352 30 1 3.6972 -2.4154 -2.5562 31 1 3.7558 -0.7738 -3.2417 32 1 5.1528 -1.4135 -2.3432 33 1 5.7209 -2.4576 0.8575 34 1 5.7414 -2.3431 -0.9187 35 1 5.9015 -0.8716 0.0699 36 1 4.0155 -0.0561 1.4119 37 1 3.6519 -1.6439 2.1377 38 1 1.5581 0.8007 3.6890 39 1 0.1722 1.1020 2.6134 40 1 -1.2576 -0.3197 4.0560 41 1 0.1278 -0.6215 5.1320 42 1 -2.3278 2.4669 7.6896 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350891935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:53 Heat of formation + Delta-G solvation = -55.675651 kcal Electronic energy + Delta-G solvation = -22776.738579 eV Core-core repulsion = 19498.497859 eV Total energy + Delta-G solvation = -3278.240719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.54258 -37.04335 -35.68059 -35.19412 -33.97134 -33.14205 -31.49549 -29.75951 -27.88383 -25.94513 -25.31731 -24.01680 -22.04097 -21.05381 -20.24818 -18.54359 -17.33657 -16.80295 -16.49133 -15.93623 -15.58067 -15.10945 -14.98633 -14.77524 -14.39546 -14.15308 -13.65942 -13.35750 -12.86933 -12.81742 -12.70491 -12.38975 -12.17915 -12.06687 -11.94900 -11.89047 -11.69141 -11.56835 -11.25376 -11.22884 -11.20459 -11.08490 -10.90457 -10.45185 -10.24376 -10.13469 -9.71930 -9.41923 -8.95039 -8.66373 -8.45648 -6.16586 -4.17827 0.64213 2.87757 3.26234 3.33525 3.37616 3.64636 4.16670 4.35629 4.44842 4.48284 4.70211 4.80029 4.89535 5.05743 5.12077 5.15091 5.23621 5.26183 5.33548 5.44124 5.45736 5.52873 5.55769 5.60289 5.63834 5.67213 5.72283 5.82379 5.96579 6.01430 6.09648 6.29054 6.50008 6.63781 6.82219 6.85405 6.85983 6.93845 7.54674 8.36824 8.84762 9.43068 10.95835 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.031758 B = 0.004354 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.448491 B = 6429.928614 C = 6617.768179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.158 3.842 3 H 0.082 0.918 4 C 0.050 3.950 5 N -0.538 5.538 6 C 0.022 3.978 7 C 0.069 3.931 8 H 0.045 0.955 9 C -0.148 4.148 10 C 0.125 3.875 11 N -1.004 6.004 12 S 2.587 3.413 13 O -0.961 6.961 14 O -0.969 6.969 15 C -0.584 4.584 16 C -0.006 4.006 17 C -0.519 4.519 18 H 0.078 0.922 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.692 -6.727 -18.010 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.052 3.948 3 H 0.100 0.900 4 C -0.079 4.079 5 N -0.262 5.262 6 C -0.126 4.126 7 C -0.041 4.041 8 H 0.063 0.937 9 C -0.206 4.206 10 C 0.000 4.000 11 N -0.841 5.841 12 S 2.687 3.313 13 O -0.951 6.951 14 O -0.959 6.959 15 C -0.717 4.717 16 C -0.045 4.045 17 C -0.558 4.558 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.533 5.533 21 Si 0.695 3.305 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.186 1.186 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.485 -7.095 -17.646 22.217 hybrid contribution -0.668 -0.754 0.310 1.054 sum 10.817 -7.849 -17.336 21.889 Atomic orbital electron populations 1.22693 0.92701 1.05674 1.03360 1.21045 0.94092 0.96037 0.83667 0.89988 1.22493 0.87189 0.99938 0.98319 1.61911 1.10549 1.50815 1.02974 1.22426 1.00781 0.97752 0.91644 1.21982 0.96226 0.94751 0.91122 0.93661 1.21897 0.93861 1.02688 1.02159 1.21585 0.79976 1.00933 0.97545 1.58023 1.18502 1.74492 1.33124 1.05755 0.73681 0.78069 0.73813 1.93594 1.50051 1.80225 1.71241 1.93502 1.70261 1.62808 1.69342 1.30400 1.10357 1.19016 1.11885 1.19404 0.93343 0.99934 0.91859 1.20849 1.28854 0.93324 1.12774 0.90394 1.24981 0.95809 0.96355 0.95924 1.69882 1.36476 1.26475 1.20509 0.86933 0.79392 0.84356 0.79826 1.19659 1.20722 1.18648 0.91551 0.91002 0.88389 0.94076 0.89689 0.95822 0.91434 0.90826 0.91633 0.92182 0.91359 0.90683 0.88027 0.85629 0.85584 0.94980 0.95495 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 7.63 37.16 0.28 -2.07 16 2 C 0.16 1.89 3.66 -67.49 -0.25 1.64 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 4 C 0.05 0.53 4.92 -3.70 -0.02 0.51 16 5 N -0.54 -5.51 4.73 -234.59 -1.11 -6.62 16 6 C 0.02 0.18 9.01 60.06 0.54 0.72 16 7 C 0.07 0.74 2.60 -67.59 -0.18 0.57 16 8 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 9 C -0.15 -1.21 8.72 37.16 0.32 -0.89 16 10 C 0.13 1.53 5.94 -3.61 -0.02 1.51 16 11 N -1.00 -13.88 3.25 -106.20 -0.34 -14.23 16 12 S 2.59 45.15 4.85 -107.50 -0.52 44.62 16 13 O -0.96 -18.31 13.69 -57.54 -0.79 -19.10 16 14 O -0.97 -19.18 16.31 -57.54 -0.94 -20.12 16 15 C -0.58 -10.92 5.85 37.16 0.22 -10.70 16 16 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 17 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 18 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 21 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 25 H 0.07 0.93 4.80 -51.93 -0.25 0.68 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 1.39 6.46 -51.93 -0.34 1.06 16 28 H 0.04 0.48 8.12 -51.93 -0.42 0.05 16 29 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.07 0.51 6.21 -51.93 -0.32 0.19 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.43 6.33 -51.93 -0.33 0.10 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.30 6.62 -51.93 -0.34 0.95 16 38 H 0.13 2.18 8.14 -51.92 -0.42 1.75 16 39 H 0.13 2.15 6.61 -51.93 -0.34 1.80 16 40 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 41 H 0.03 0.64 7.57 -51.92 -0.39 0.24 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -33.25 330.01 -9.18 -42.43 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.92 Total: -0.61 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 0.36 Total: -21.89 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.68 Total: -47.19 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -1.73 Total: -39.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 45.15 SS G_CDS: -0.52 Total: 44.62 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.25 -9.18 -42.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350891935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.246 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds