Wall clock time and date at job start Fri Apr 10 2020 17:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.62170 * 2 1 4 4 C 1.53240 * 109.79028 * 239.51529 * 2 1 3 5 5 N 1.46900 * 109.33897 * 186.36664 * 4 2 1 6 6 C 1.46897 * 111.00042 * 187.25171 * 5 4 2 7 7 C 1.46901 * 111.26809 * 63.09928 * 5 4 2 8 8 H 1.09002 * 109.48797 * 56.85796 * 7 5 4 9 9 C 1.53003 * 109.48864 * 176.93394 * 7 5 4 10 10 C 1.53236 * 109.34300 * 296.89470 * 7 5 4 11 11 N 1.47076 * 108.51930 * 53.83106 * 10 7 5 12 12 S 1.65600 * 120.88182 * 128.83367 * 11 10 7 13 13 O 1.42101 * 104.28092 * 219.92865 * 12 11 10 14 14 O 1.42101 * 104.27780 * 347.78947 * 12 11 10 15 15 C 1.81400 * 104.44901 * 103.85456 * 12 11 10 16 16 C 1.53002 * 109.47514 * 179.97438 * 15 12 11 17 17 C 1.50696 * 109.47509 * 179.97438 * 16 15 12 18 18 H 1.07999 * 119.99630 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99962 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00070 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00174 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47179 * 90.00313 * 21 19 17 23 23 H 1.48504 * 109.47279 * 210.00733 * 21 19 17 24 24 H 1.48499 * 109.47013 * 330.00145 * 21 19 17 25 25 H 1.09003 * 109.47152 * 291.67049 * 1 2 3 26 26 H 1.09003 * 109.46927 * 51.67299 * 1 2 3 27 27 H 1.09004 * 109.46642 * 171.66679 * 1 2 3 28 28 H 1.08997 * 109.48648 * 306.32264 * 4 2 1 29 29 H 1.08994 * 109.49331 * 66.40132 * 4 2 1 30 30 H 1.08996 * 109.47001 * 295.70186 * 6 5 4 31 31 H 1.09006 * 109.46652 * 55.69596 * 6 5 4 32 32 H 1.08990 * 109.47296 * 175.69511 * 6 5 4 33 33 H 1.09004 * 109.46693 * 179.86837 * 9 7 5 34 34 H 1.08996 * 109.47575 * 299.86837 * 9 7 5 35 35 H 1.09000 * 109.46951 * 59.87088 * 9 7 5 36 36 H 1.08993 * 109.63240 * 294.12178 * 10 7 5 37 37 H 1.08996 * 109.62708 * 173.53752 * 10 7 5 38 38 H 1.09002 * 109.47614 * 300.00362 * 15 12 11 39 39 H 1.08997 * 109.47213 * 60.00585 * 15 12 11 40 40 H 1.08995 * 109.47411 * 300.00984 * 16 15 12 41 41 H 1.09011 * 109.46479 * 60.00024 * 16 15 12 42 42 H 0.96995 * 119.99951 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0489 -0.7315 -1.2426 5 7 3.5098 -0.8595 -1.1571 6 6 4.0648 -1.4005 -2.4050 7 6 3.9063 -1.6804 -0.0052 8 1 3.4308 -2.6588 -0.0750 9 6 5.4268 -1.8504 0.0013 10 6 3.4636 -0.9878 1.2880 11 7 2.0242 -0.7007 1.1950 12 16 0.9872 -1.1539 2.4040 13 8 -0.1701 -1.6134 1.7193 14 8 1.7561 -2.0322 3.2143 15 6 0.6305 0.3854 3.2951 16 6 -0.3300 0.0953 4.4502 17 6 -0.6259 1.3739 5.1908 18 1 -0.1744 2.3009 4.8694 19 6 -1.4730 1.3604 6.2785 20 7 -1.7316 2.4764 6.9246 21 14 -2.2544 -0.2428 6.8338 22 1 -1.3717 -0.9059 7.8268 23 1 -3.5739 0.0385 7.4544 24 1 -2.4392 -1.1355 5.6616 25 1 -0.3633 0.3795 0.9551 26 1 -0.3633 0.6373 -0.8062 27 1 -0.3633 -1.0169 -0.1489 28 1 1.5993 -1.7230 -1.2950 29 1 1.7850 -0.1644 -2.1352 30 1 3.6972 -2.4154 -2.5562 31 1 3.7558 -0.7738 -3.2417 32 1 5.1528 -1.4135 -2.3432 33 1 5.7209 -2.4576 0.8575 34 1 5.7414 -2.3431 -0.9187 35 1 5.9015 -0.8716 0.0699 36 1 4.0155 -0.0561 1.4119 37 1 3.6519 -1.6439 2.1377 38 1 1.5581 0.8007 3.6890 39 1 0.1722 1.1020 2.6134 40 1 -1.2576 -0.3197 4.0560 41 1 0.1278 -0.6215 5.1320 42 1 -2.3278 2.4669 7.6896 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350891935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:52 Heat of formation + Delta-G solvation = -80.785317 kcal Electronic energy + Delta-G solvation = -22777.827415 eV Core-core repulsion = 19498.497859 eV Total energy + Delta-G solvation = -3279.329556 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41673 -38.46645 -37.09727 -36.20977 -35.92710 -34.04722 -33.49059 -30.64078 -28.74268 -27.80784 -26.19008 -24.85537 -23.32210 -22.64664 -21.12572 -19.93230 -19.19274 -18.08625 -17.71420 -17.11022 -16.75232 -16.42958 -16.28641 -15.85982 -15.55677 -15.27136 -15.22383 -14.83327 -14.27070 -13.83598 -13.82114 -13.73073 -13.29828 -13.26098 -13.09586 -13.07984 -12.99872 -12.76932 -12.64036 -12.56327 -12.23894 -12.15141 -11.97015 -11.93805 -11.87422 -11.72902 -11.35619 -11.22987 -10.85727 -10.03513 -9.28055 -8.37820 -6.43791 -0.76597 1.30769 1.32364 1.42585 1.63383 2.28250 2.74404 2.89736 2.95843 3.16261 3.46486 3.83075 3.86386 3.93106 4.03011 4.11869 4.19394 4.30430 4.47756 4.51892 4.54354 4.62668 4.70798 4.71148 4.75118 4.83232 4.92256 4.94759 4.99629 5.04233 5.08388 5.11832 5.15564 5.36216 5.44855 5.49563 5.62719 6.05773 6.12424 6.15607 6.61989 7.20623 8.77828 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.031758 B = 0.004354 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.448491 B = 6429.928614 C = 6617.768179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.153 3.847 3 H 0.099 0.901 4 C 0.052 3.948 5 N -0.541 5.541 6 C 0.021 3.979 7 C 0.069 3.931 8 H 0.029 0.971 9 C -0.143 4.143 10 C 0.117 3.883 11 N -0.998 5.998 12 S 2.611 3.389 13 O -0.977 6.977 14 O -0.993 6.993 15 C -0.589 4.589 16 C -0.014 4.014 17 C -0.528 4.528 18 H 0.049 0.951 19 C 0.015 3.985 20 N -0.939 5.939 21 Si 0.924 3.076 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.250 1.250 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.028 0.972 29 H 0.110 0.890 30 H 0.021 0.979 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.033 0.967 41 H 0.028 0.972 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.739 -7.540 -19.828 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.048 3.952 3 H 0.117 0.883 4 C -0.078 4.078 5 N -0.266 5.266 6 C -0.126 4.126 7 C -0.041 4.041 8 H 0.047 0.953 9 C -0.201 4.201 10 C -0.008 4.008 11 N -0.837 5.837 12 S 2.710 3.290 13 O -0.968 6.968 14 O -0.983 6.983 15 C -0.721 4.721 16 C -0.053 4.053 17 C -0.567 4.567 18 H 0.067 0.933 19 C -0.184 4.184 20 N -0.579 5.579 21 Si 0.747 3.253 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.174 1.174 25 H 0.067 0.933 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.046 0.954 29 H 0.128 0.872 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.534 -7.903 -19.461 24.459 hybrid contribution -0.924 -0.427 0.772 1.278 sum 11.610 -8.330 -18.688 23.525 Atomic orbital electron populations 1.22690 0.93340 1.05127 1.03553 1.21288 0.93678 0.96905 0.83337 0.88303 1.22502 0.87537 0.99418 0.98341 1.61952 1.10158 1.50824 1.03683 1.22506 1.01451 0.97779 0.90886 1.21985 0.97771 0.93747 0.90646 0.95269 1.21872 0.91820 1.03280 1.03079 1.21830 0.78835 1.01830 0.98345 1.57781 1.18913 1.74609 1.32420 1.04838 0.73465 0.77017 0.73728 1.93586 1.51409 1.80364 1.71399 1.93464 1.70814 1.63435 1.70616 1.30410 1.09744 1.21052 1.10848 1.19348 0.94756 0.97841 0.93369 1.21156 1.28302 0.94098 1.13132 0.93303 1.25860 0.96544 0.99786 0.96179 1.70006 1.37692 1.28757 1.21406 0.86036 0.78962 0.80339 0.79981 1.18511 1.19692 1.17401 0.93260 0.88046 0.90152 0.95410 0.87237 0.96072 0.90152 0.89609 0.91266 0.90867 0.90775 0.89041 0.88918 0.84633 0.84277 0.94917 0.95372 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.51 7.63 71.98 0.55 -3.96 16 2 C 0.15 3.36 3.66 44.96 0.16 3.52 16 3 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.05 0.97 4.92 86.38 0.42 1.39 16 5 N -0.54 -9.64 4.73 -896.11 -4.24 -13.88 16 6 C 0.02 0.28 9.01 127.69 1.15 1.43 16 7 C 0.07 1.35 2.60 45.00 0.12 1.46 16 8 H 0.03 0.66 8.14 -2.39 -0.02 0.65 16 9 C -0.14 -1.98 8.72 71.98 0.63 -1.35 16 10 C 0.12 2.66 5.94 86.35 0.51 3.18 16 11 N -1.00 -26.29 3.25 -489.92 -1.59 -27.88 16 12 S 2.61 89.73 4.85 -56.49 -0.27 89.45 16 13 O -0.98 -36.90 13.69 -127.65 -1.75 -38.64 16 14 O -0.99 -38.95 16.31 -127.65 -2.08 -41.03 16 15 C -0.59 -21.92 5.85 71.98 0.42 -21.50 16 16 C -0.01 -0.67 4.05 29.85 0.12 -0.55 16 17 C -0.53 -30.18 9.66 25.60 0.25 -29.93 16 18 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 19 C 0.02 0.87 5.47 84.65 0.46 1.34 16 20 N -0.94 -57.97 13.96 21.45 0.30 -57.67 16 21 Si 0.92 44.13 27.47 68.60 1.88 46.01 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 25 H 0.05 1.34 4.80 -2.39 -0.01 1.33 16 26 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.08 2.22 6.46 -2.39 -0.02 2.21 16 28 H 0.03 0.60 8.12 -2.39 -0.02 0.58 16 29 H 0.11 1.52 8.06 -2.39 -0.02 1.50 16 30 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.08 0.85 8.08 -2.38 -0.02 0.83 16 32 H 0.09 0.91 6.21 -2.39 -0.01 0.90 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.83 6.33 -2.39 -0.02 0.82 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 2.29 6.62 -2.39 -0.02 2.27 16 38 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 39 H 0.14 4.72 6.61 -2.39 -0.02 4.70 16 40 H 0.03 1.54 7.20 -2.39 -0.02 1.53 16 41 H 0.03 1.32 7.57 -2.38 -0.02 1.31 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -71.85 330.01 -2.02 -73.86 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.93 Total: 14.75 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 4.80 Total: -44.97 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -5.53 Total: -99.43 kcal Atomic # 8 Polarization: -75.84 SS G_CDS: -3.83 Total: -79.67 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Atomic # 16 Polarization: 89.73 SS G_CDS: -0.27 Total: 89.45 kcal Total: -71.85 -2.02 -73.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350891935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.922 kcal (2) G-P(sol) polarization free energy of solvation -71.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds