Wall clock time and date at job start Fri Apr 10 2020 17:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99708 * 2 1 4 4 C 1.53006 * 109.46567 * 273.69434 * 3 2 1 5 5 H 1.08996 * 109.53582 * 306.06480 * 4 3 2 6 6 C 1.53120 * 109.50289 * 66.16471 * 4 3 2 7 7 C 1.53115 * 109.15798 * 177.58919 * 6 4 3 8 8 C 1.53035 * 109.28311 * 302.34552 * 7 6 4 9 9 N 1.46842 * 109.52193 * 59.18140 * 8 7 6 10 10 C 1.46898 * 111.00236 * 174.16232 * 9 8 7 11 11 C 1.50701 * 109.46922 * 294.20903 * 10 9 8 12 12 H 1.07999 * 120.00109 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99837 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00019 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00051 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46872 * 90.00783 * 15 13 11 17 17 H 1.48499 * 109.47464 * 330.00578 * 15 13 11 18 18 H 1.48503 * 109.47316 * 210.00109 * 15 13 11 19 19 C 1.46848 * 111.19690 * 298.25802 * 9 8 7 20 20 S 1.65593 * 120.00199 * 179.97438 * 2 1 3 21 21 C 1.81403 * 104.45038 * 274.92743 * 20 2 1 22 22 O 1.42105 * 104.27916 * 30.99801 * 20 2 1 23 23 O 1.42100 * 104.27839 * 158.85514 * 20 2 1 24 24 H 1.08998 * 109.47409 * 90.00465 * 1 2 3 25 25 H 1.09006 * 109.46924 * 210.00478 * 1 2 3 26 26 H 1.08999 * 109.47237 * 330.00010 * 1 2 3 27 27 H 1.08999 * 109.46942 * 153.70168 * 3 2 1 28 28 H 1.08997 * 109.47229 * 33.69558 * 3 2 1 29 29 H 1.08998 * 109.52332 * 297.49907 * 6 4 3 30 30 H 1.09001 * 109.52148 * 57.62458 * 6 4 3 31 31 H 1.08999 * 109.50271 * 62.29244 * 7 6 4 32 32 H 1.09005 * 109.50470 * 182.36522 * 7 6 4 33 33 H 1.09000 * 109.46045 * 299.16342 * 8 7 6 34 34 H 1.08998 * 109.46144 * 179.19651 * 8 7 6 35 35 H 1.08996 * 109.47536 * 174.20579 * 10 9 8 36 36 H 1.09006 * 109.47300 * 54.20740 * 10 9 8 37 37 H 0.96996 * 120.00064 * 180.02562 * 14 13 11 38 38 H 1.09008 * 109.46575 * 181.76180 * 19 9 8 39 39 H 1.09002 * 109.46160 * 301.72443 * 19 9 8 40 40 H 1.08996 * 109.46985 * 55.01330 * 21 20 2 41 41 H 1.09003 * 109.46697 * 175.01388 * 21 20 2 42 42 H 1.08996 * 109.47140 * 295.00734 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3719 1.7568 -1.4396 5 1 2.8348 0.9715 -2.0371 6 6 1.0033 2.1086 -2.0295 7 6 1.1925 2.6526 -3.4482 8 6 2.1174 3.8709 -3.4032 9 7 3.4132 3.4824 -2.8320 10 6 4.3729 4.5925 -2.9004 11 6 4.6873 4.8964 -4.3426 12 1 4.2212 4.3221 -5.1295 13 6 5.5708 5.9070 -4.6573 14 7 5.8449 6.1727 -5.9159 15 14 6.3775 6.8999 -3.2961 16 1 7.6510 6.2489 -2.8966 17 1 5.4667 6.9660 -2.1251 18 1 6.6563 8.2744 -3.7845 19 6 3.2627 3.0012 -1.4528 20 16 2.2930 -1.4341 0.0006 21 6 2.3887 -1.9007 1.7510 22 8 1.4460 -2.3282 -0.7082 23 8 3.5806 -1.0955 -0.4963 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1770 1.1228 0.4553 28 1 1.6387 2.0109 0.5701 29 1 0.3801 1.2149 -2.0620 30 1 0.5230 2.8653 -1.4092 31 1 1.6367 1.8813 -4.0774 32 1 0.2254 2.9441 -3.8581 33 1 1.6660 4.6469 -2.7851 34 1 2.2655 4.2519 -4.4136 35 1 5.2889 4.3135 -2.3798 36 1 3.9414 5.4754 -2.4287 37 1 6.4667 6.8834 -6.1372 38 1 4.2427 2.7506 -1.0465 39 1 2.8060 3.7813 -0.8438 40 1 1.3852 -1.9258 2.1757 41 1 2.8456 -2.8864 1.8397 42 1 2.9930 -1.1705 2.2892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352571654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:55 Heat of formation + Delta-G solvation = -64.015890 kcal Electronic energy + Delta-G solvation = -22349.360477 eV Core-core repulsion = 19070.758098 eV Total energy + Delta-G solvation = -3278.602379 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.90388 -37.29036 -36.47841 -36.01745 -33.40865 -31.87265 -31.15915 -29.77923 -27.69250 -27.32895 -24.53287 -23.46825 -21.88589 -20.52893 -19.22880 -18.96659 -17.68867 -16.80344 -16.64390 -16.37811 -15.40816 -14.93803 -14.37639 -14.15175 -14.03880 -13.89806 -13.69756 -13.49317 -13.43981 -13.09853 -12.95447 -12.57712 -12.25241 -12.20361 -12.15611 -12.03057 -11.73444 -11.43447 -11.38735 -11.25001 -10.74727 -10.67197 -10.54060 -10.27232 -10.13534 -9.85380 -9.71612 -9.27500 -8.98892 -8.52222 -7.26868 -6.00690 -3.97506 0.02141 2.40995 3.31549 3.38480 3.40254 3.69258 3.88867 4.29526 4.45774 4.52748 4.61343 4.75556 4.92576 5.10469 5.23110 5.27195 5.30675 5.32412 5.35638 5.46662 5.61479 5.66666 5.80317 5.86358 5.90972 6.05795 6.17677 6.21460 6.28169 6.37608 6.44278 6.61917 6.77158 6.80186 6.95011 7.07302 7.66227 7.99917 8.15690 8.72336 9.08615 9.61278 11.12554 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.027509 B = 0.003824 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.618832 B = 7320.871613 C = 7692.707574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.999 5.999 3 C 0.131 3.869 4 C -0.103 4.103 5 H 0.087 0.913 6 C -0.114 4.114 7 C -0.118 4.118 8 C 0.065 3.935 9 N -0.526 5.526 10 C 0.163 3.837 11 C -0.507 4.507 12 H 0.081 0.919 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.875 3.125 16 H -0.276 1.276 17 H -0.269 1.269 18 H -0.287 1.287 19 C 0.062 3.938 20 S 2.607 3.393 21 C -0.677 4.677 22 O -0.956 6.956 23 O -0.942 6.942 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.017 0.983 34 H 0.087 0.913 35 H 0.024 0.976 36 H -0.013 1.013 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.021 0.979 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.248 -13.407 18.338 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.837 5.837 3 C 0.005 3.995 4 C -0.124 4.124 5 H 0.106 0.894 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.064 4.064 9 N -0.250 5.250 10 C 0.036 3.964 11 C -0.546 4.546 12 H 0.099 0.901 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.703 3.297 16 H -0.201 1.201 17 H -0.193 1.193 18 H -0.213 1.213 19 C -0.067 4.067 20 S 2.699 3.301 21 C -0.826 4.826 22 O -0.946 6.946 23 O -0.933 6.933 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.106 0.894 35 H 0.042 0.958 36 H 0.005 0.995 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.636 -14.102 17.209 25.108 hybrid contribution 0.091 1.427 1.904 2.381 sum -11.545 -12.674 19.113 25.675 Atomic orbital electron populations 1.21558 0.78562 1.02339 1.02698 1.57423 1.15048 1.21515 1.89737 1.21391 0.96084 0.84213 0.97802 1.21639 0.96434 0.98915 0.95405 0.89440 1.21722 0.96375 1.00136 0.96891 1.21625 0.98680 0.98896 0.96429 1.21965 0.88713 0.94430 1.01244 1.61781 1.09384 1.37661 1.16198 1.20156 0.90752 0.86982 0.98479 1.21057 1.25843 1.16812 0.90848 0.90105 1.24902 0.96325 0.96926 0.95229 1.69897 1.35708 1.31681 1.16781 0.86863 0.80287 0.79748 0.82842 1.20141 1.19349 1.21288 1.21984 0.98739 0.94743 0.91274 1.05130 0.74181 0.73419 0.77412 1.30615 1.11228 1.12291 1.28470 1.93608 1.67560 1.64519 1.68901 1.93665 1.40410 1.82152 1.77044 0.91728 0.91732 0.90972 0.89869 0.90437 0.91922 0.92823 0.91353 0.92384 0.96489 0.89447 0.95784 0.99546 0.92725 0.91217 0.96107 0.85716 0.85652 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 9.11 59.85 0.55 1.20 16 2 N -1.00 -8.91 3.02 -121.75 -0.37 -9.28 16 3 C 0.13 1.33 4.77 -4.04 -0.02 1.31 16 4 C -0.10 -1.48 2.55 -90.53 -0.23 -1.71 16 5 H 0.09 1.47 7.99 -51.93 -0.41 1.06 16 6 C -0.11 -1.50 4.76 -26.61 -0.13 -1.63 16 7 C -0.12 -1.87 6.09 -26.65 -0.16 -2.03 16 8 C 0.06 1.26 5.29 -3.84 -0.02 1.24 16 9 N -0.53 -11.31 4.65 -236.12 -1.10 -12.40 16 10 C 0.16 4.03 3.79 -4.98 -0.02 4.01 16 11 C -0.51 -14.68 8.98 -34.44 -0.31 -14.99 16 12 H 0.08 2.55 7.37 -52.49 -0.39 2.16 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 15 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 C 0.06 1.06 4.74 -3.83 -0.02 1.05 16 20 S 2.61 25.23 5.96 -107.50 -0.64 24.59 16 21 C -0.68 -3.54 10.99 101.05 1.11 -2.43 16 22 O -0.96 -12.18 17.28 -57.54 -0.99 -13.17 16 23 O -0.94 -13.07 16.68 -57.54 -0.96 -14.03 16 24 H 0.06 0.52 6.33 -51.93 -0.33 0.19 16 25 H 0.06 0.32 7.92 -51.93 -0.41 -0.09 16 26 H 0.07 0.38 7.93 -51.93 -0.41 -0.03 16 27 H 0.08 0.79 7.51 -51.93 -0.39 0.40 16 28 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 29 H 0.06 0.73 5.40 -51.93 -0.28 0.45 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 1.93 6.70 -51.93 -0.35 1.59 16 35 H 0.02 0.60 7.41 -51.93 -0.39 0.21 16 36 H -0.01 -0.33 7.18 -51.93 -0.37 -0.70 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.07 1.19 8.02 -51.92 -0.42 0.77 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.12 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -36.22 337.47 -9.32 -45.55 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -7.11 Total: -4.12 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 0.65 Total: -12.10 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.69 Total: -48.89 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.95 Total: -27.20 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Atomic # 16 Polarization: 25.23 SS G_CDS: -0.64 Total: 24.59 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.22 -9.32 -45.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352571654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.470 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds