Wall clock time and date at job start Fri Apr 10 2020 17:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99708 * 2 1 4 4 C 1.53006 * 109.46567 * 273.69434 * 3 2 1 5 5 H 1.08996 * 109.53582 * 306.06480 * 4 3 2 6 6 C 1.53120 * 109.50289 * 66.16471 * 4 3 2 7 7 C 1.53115 * 109.15798 * 177.58919 * 6 4 3 8 8 C 1.53035 * 109.28311 * 302.34552 * 7 6 4 9 9 N 1.46842 * 109.52193 * 59.18140 * 8 7 6 10 10 C 1.46898 * 111.00236 * 174.16232 * 9 8 7 11 11 C 1.50701 * 109.46922 * 294.20903 * 10 9 8 12 12 H 1.07999 * 120.00109 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99837 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00019 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00051 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46872 * 90.00783 * 15 13 11 17 17 H 1.48499 * 109.47464 * 330.00578 * 15 13 11 18 18 H 1.48503 * 109.47316 * 210.00109 * 15 13 11 19 19 C 1.46848 * 111.19690 * 298.25802 * 9 8 7 20 20 S 1.65593 * 120.00199 * 179.97438 * 2 1 3 21 21 C 1.81403 * 104.45038 * 274.92743 * 20 2 1 22 22 O 1.42105 * 104.27916 * 30.99801 * 20 2 1 23 23 O 1.42100 * 104.27839 * 158.85514 * 20 2 1 24 24 H 1.08998 * 109.47409 * 90.00465 * 1 2 3 25 25 H 1.09006 * 109.46924 * 210.00478 * 1 2 3 26 26 H 1.08999 * 109.47237 * 330.00010 * 1 2 3 27 27 H 1.08999 * 109.46942 * 153.70168 * 3 2 1 28 28 H 1.08997 * 109.47229 * 33.69558 * 3 2 1 29 29 H 1.08998 * 109.52332 * 297.49907 * 6 4 3 30 30 H 1.09001 * 109.52148 * 57.62458 * 6 4 3 31 31 H 1.08999 * 109.50271 * 62.29244 * 7 6 4 32 32 H 1.09005 * 109.50470 * 182.36522 * 7 6 4 33 33 H 1.09000 * 109.46045 * 299.16342 * 8 7 6 34 34 H 1.08998 * 109.46144 * 179.19651 * 8 7 6 35 35 H 1.08996 * 109.47536 * 174.20579 * 10 9 8 36 36 H 1.09006 * 109.47300 * 54.20740 * 10 9 8 37 37 H 0.96996 * 120.00064 * 180.02562 * 14 13 11 38 38 H 1.09008 * 109.46575 * 181.76180 * 19 9 8 39 39 H 1.09002 * 109.46160 * 301.72443 * 19 9 8 40 40 H 1.08996 * 109.46985 * 55.01330 * 21 20 2 41 41 H 1.09003 * 109.46697 * 175.01388 * 21 20 2 42 42 H 1.08996 * 109.47140 * 295.00734 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3719 1.7568 -1.4396 5 1 2.8348 0.9715 -2.0371 6 6 1.0033 2.1086 -2.0295 7 6 1.1925 2.6526 -3.4482 8 6 2.1174 3.8709 -3.4032 9 7 3.4132 3.4824 -2.8320 10 6 4.3729 4.5925 -2.9004 11 6 4.6873 4.8964 -4.3426 12 1 4.2212 4.3221 -5.1295 13 6 5.5708 5.9070 -4.6573 14 7 5.8449 6.1727 -5.9159 15 14 6.3775 6.8999 -3.2961 16 1 7.6510 6.2489 -2.8966 17 1 5.4667 6.9660 -2.1251 18 1 6.6563 8.2744 -3.7845 19 6 3.2627 3.0012 -1.4528 20 16 2.2930 -1.4341 0.0006 21 6 2.3887 -1.9007 1.7510 22 8 1.4460 -2.3282 -0.7082 23 8 3.5806 -1.0955 -0.4963 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1770 1.1228 0.4553 28 1 1.6387 2.0109 0.5701 29 1 0.3801 1.2149 -2.0620 30 1 0.5230 2.8653 -1.4092 31 1 1.6367 1.8813 -4.0774 32 1 0.2254 2.9441 -3.8581 33 1 1.6660 4.6469 -2.7851 34 1 2.2655 4.2519 -4.4136 35 1 5.2889 4.3135 -2.3798 36 1 3.9414 5.4754 -2.4287 37 1 6.4667 6.8834 -6.1372 38 1 4.2427 2.7506 -1.0465 39 1 2.8060 3.7813 -0.8438 40 1 1.3852 -1.9258 2.1757 41 1 2.8456 -2.8864 1.8397 42 1 2.9930 -1.1705 2.2892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352571654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:54 Heat of formation + Delta-G solvation = -93.439380 kcal Electronic energy + Delta-G solvation = -22350.636375 eV Core-core repulsion = 19070.758098 eV Total energy + Delta-G solvation = -3279.878277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.18394 -38.15034 -37.49114 -36.88254 -35.15858 -33.70106 -32.35029 -30.24886 -29.54216 -28.22363 -25.46710 -25.07980 -23.29042 -22.12274 -20.55833 -19.72618 -18.92403 -18.41779 -17.49227 -17.17234 -16.81309 -16.18079 -15.96901 -15.57184 -15.10634 -14.98235 -14.88391 -14.50732 -14.41415 -13.99698 -13.91372 -13.78336 -13.63107 -13.29829 -13.13734 -13.10727 -13.06608 -12.56285 -12.47418 -12.43582 -12.30366 -12.07089 -11.86054 -11.78692 -11.65826 -11.48803 -11.18930 -11.01718 -10.77783 -9.82195 -8.93935 -8.28185 -6.31930 -0.65134 1.34502 1.36733 1.47417 1.73713 2.34896 3.03875 3.04982 3.20105 3.27943 3.75643 3.87718 3.99661 4.08942 4.16580 4.21493 4.30419 4.49530 4.56435 4.59336 4.68705 4.75043 4.80087 4.81406 4.85459 4.93317 4.98455 5.01902 5.06600 5.10832 5.20654 5.26720 5.30365 5.45458 5.51229 5.58358 5.74178 6.03665 6.45034 6.71910 6.75517 7.31800 8.88832 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.027509 B = 0.003824 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.618832 B = 7320.871613 C = 7692.707574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.999 5.999 3 C 0.136 3.864 4 C -0.103 4.103 5 H 0.050 0.950 6 C -0.106 4.106 7 C -0.114 4.114 8 C 0.068 3.932 9 N -0.552 5.552 10 C 0.173 3.827 11 C -0.518 4.518 12 H 0.032 0.968 13 C 0.005 3.995 14 N -0.950 5.950 15 Si 0.952 3.048 16 H -0.266 1.266 17 H -0.248 1.248 18 H -0.280 1.280 19 C 0.060 3.940 20 S 2.601 3.399 21 C -0.646 4.646 22 O -0.998 6.998 23 O -0.997 6.997 24 H 0.048 0.952 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.028 0.972 34 H 0.044 0.956 35 H 0.027 0.973 36 H -0.009 1.009 37 H 0.267 0.733 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.153 0.847 41 H 0.140 0.860 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.568 -13.406 22.942 29.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.836 5.836 3 C 0.010 3.990 4 C -0.124 4.124 5 H 0.069 0.931 6 C -0.143 4.143 7 C -0.152 4.152 8 C -0.060 4.060 9 N -0.277 5.277 10 C 0.046 3.954 11 C -0.557 4.557 12 H 0.050 0.950 13 C -0.192 4.192 14 N -0.591 5.591 15 Si 0.775 3.225 16 H -0.191 1.191 17 H -0.172 1.172 18 H -0.206 1.206 19 C -0.068 4.068 20 S 2.699 3.301 21 C -0.800 4.800 22 O -0.988 6.988 23 O -0.988 6.988 24 H 0.067 0.933 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.008 0.992 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.989 -14.118 21.774 29.019 hybrid contribution 0.451 1.329 0.416 1.464 sum -12.538 -12.789 22.190 28.516 Atomic orbital electron populations 1.21790 0.77156 1.04690 1.02456 1.57220 1.15838 1.20482 1.90084 1.21334 0.97459 0.85379 0.94843 1.21629 0.96016 0.96493 0.98223 0.93112 1.21712 0.96242 1.01469 0.94912 1.21598 0.98457 0.96597 0.98541 1.21897 0.88819 0.96420 0.98888 1.61676 1.09878 1.36467 1.19664 1.19904 0.91881 0.88313 0.95318 1.21290 1.25655 1.16462 0.92262 0.94956 1.25910 0.96930 0.98213 0.98119 1.70065 1.36807 1.32753 1.19486 0.85644 0.79477 0.77780 0.79582 1.19060 1.17201 1.20580 1.22093 0.99701 0.96349 0.88687 1.04948 0.72672 0.73093 0.79431 1.30321 1.13756 1.13446 1.22492 1.93551 1.68021 1.65475 1.71782 1.93599 1.42666 1.82847 1.79681 0.93328 0.89699 0.88380 0.89334 0.87043 0.90086 0.90315 0.93748 0.90142 0.95375 0.93725 0.95538 0.99184 0.92421 0.91532 0.93973 0.82834 0.84210 0.83437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 9.11 127.77 1.16 2.03 16 2 N -1.00 -15.12 3.02 -539.11 -1.63 -16.75 16 3 C 0.14 2.35 4.77 86.38 0.41 2.76 16 4 C -0.10 -2.82 2.55 -10.74 -0.03 -2.85 16 5 H 0.05 1.76 7.99 -2.39 -0.02 1.74 16 6 C -0.11 -2.58 4.76 30.67 0.15 -2.44 16 7 C -0.11 -3.61 6.09 30.64 0.19 -3.43 16 8 C 0.07 2.72 5.29 86.33 0.46 3.18 16 9 N -0.55 -24.23 4.65 -900.93 -4.19 -28.42 16 10 C 0.17 8.67 3.79 85.56 0.32 8.99 16 11 C -0.52 -31.41 8.98 25.60 0.23 -31.18 16 12 H 0.03 2.20 7.37 -2.91 -0.02 2.18 16 13 C 0.01 0.31 5.47 84.65 0.46 0.77 16 14 N -0.95 -61.23 13.96 21.45 0.30 -60.93 16 15 Si 0.95 45.04 27.47 68.60 1.88 46.92 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 C 0.06 1.99 4.74 86.33 0.41 2.40 16 20 S 2.60 46.79 5.96 -56.49 -0.34 46.46 16 21 C -0.65 -3.99 10.99 113.37 1.25 -2.74 16 22 O -1.00 -25.03 17.28 -127.65 -2.21 -27.24 16 23 O -1.00 -27.98 16.68 -127.65 -2.13 -30.11 16 24 H 0.05 0.66 6.33 -2.39 -0.02 0.65 16 25 H 0.08 0.54 7.92 -2.38 -0.02 0.52 16 26 H 0.10 0.53 7.93 -2.39 -0.02 0.51 16 27 H 0.09 1.45 7.51 -2.39 -0.02 1.44 16 28 H 0.11 1.23 7.94 -2.39 -0.02 1.21 16 29 H 0.08 1.72 5.40 -2.39 -0.01 1.71 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 2.13 6.70 -2.39 -0.02 2.11 16 35 H 0.03 1.31 7.41 -2.39 -0.02 1.29 16 36 H -0.01 -0.46 7.18 -2.38 -0.02 -0.48 16 37 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 38 H 0.07 2.21 8.02 -2.38 -0.02 2.19 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.15 0.19 8.14 -2.39 -0.02 0.18 16 41 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -84.92 337.47 -2.37 -87.29 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 0.93 Total: 5.25 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 5.01 Total: -22.48 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -5.52 Total: -106.09 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -4.33 Total: -57.35 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Atomic # 16 Polarization: 46.79 SS G_CDS: -0.34 Total: 46.46 kcal Total: -84.92 -2.37 -87.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352571654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.151 kcal (2) G-P(sol) polarization free energy of solvation -84.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds