Wall clock time and date at job start Fri Apr 10 2020 17:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00221 * 2 1 4 4 C 1.53000 * 109.47622 * 275.00857 * 3 2 1 5 5 H 1.09000 * 109.50410 * 55.07433 * 4 3 2 6 6 C 1.53123 * 109.50089 * 295.00041 * 4 3 2 7 7 C 1.53120 * 109.15942 * 182.36547 * 6 4 3 8 8 C 1.53032 * 109.28193 * 57.65066 * 7 6 4 9 9 N 1.46850 * 109.52239 * 300.82293 * 8 7 6 10 10 C 1.46902 * 110.99736 * 185.84044 * 9 8 7 11 11 C 1.50696 * 109.47470 * 66.04145 * 10 9 8 12 12 H 1.08003 * 120.00087 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99956 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46845 * 60.00735 * 15 13 11 17 17 H 1.48503 * 109.47399 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47295 * 300.00832 * 15 13 11 19 19 C 1.46846 * 111.20014 * 61.74240 * 9 8 7 20 20 S 1.65601 * 119.99784 * 180.02562 * 2 1 3 21 21 C 1.81401 * 104.44754 * 269.99273 * 20 2 1 22 22 O 1.42096 * 104.28008 * 26.06171 * 20 2 1 23 23 O 1.42102 * 104.27666 * 153.92676 * 20 2 1 24 24 H 1.08994 * 109.47680 * 89.99832 * 1 2 3 25 25 H 1.09001 * 109.46729 * 210.00071 * 1 2 3 26 26 H 1.09000 * 109.46791 * 329.99034 * 1 2 3 27 27 H 1.08997 * 109.47155 * 155.00517 * 3 2 1 28 28 H 1.09007 * 109.46875 * 35.00500 * 3 2 1 29 29 H 1.08999 * 109.52284 * 62.45840 * 6 4 3 30 30 H 1.09002 * 109.52223 * 302.26533 * 6 4 3 31 31 H 1.09005 * 109.50263 * 297.70625 * 7 6 4 32 32 H 1.09005 * 109.53232 * 177.61367 * 7 6 4 33 33 H 1.08994 * 109.46728 * 180.80257 * 8 7 6 34 34 H 1.09006 * 109.46311 * 60.83319 * 8 7 6 35 35 H 1.09001 * 109.47165 * 306.04118 * 10 9 8 36 36 H 1.09004 * 109.46739 * 186.04785 * 10 9 8 37 37 H 0.97000 * 119.99806 * 0.02562 * 14 13 11 38 38 H 1.08999 * 109.46315 * 58.26871 * 19 9 8 39 39 H 1.09002 * 109.45908 * 178.24395 * 19 9 8 40 40 H 1.08999 * 109.47270 * 60.00061 * 21 20 2 41 41 H 1.09000 * 109.47336 * 180.02562 * 21 20 2 42 42 H 1.09004 * 109.47051 * 300.00655 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3435 1.7734 -1.4369 5 1 1.3594 1.8414 -1.9006 6 6 3.2179 0.8012 -2.2338 7 6 3.4076 1.3437 -3.6531 8 6 4.0346 2.7378 -3.5817 9 7 3.1602 3.6303 -2.8101 10 6 3.6612 5.0109 -2.8373 11 6 3.5737 5.5496 -4.2420 12 1 3.1844 4.9285 -5.0352 13 6 3.9897 6.8355 -4.5143 14 7 4.4633 7.5919 -3.5484 15 14 3.8805 7.5035 -6.2554 16 1 2.4658 7.4810 -6.7063 17 1 4.3872 8.8991 -6.2829 18 1 4.7022 6.6611 -7.1612 19 6 3.0014 3.1551 -1.4297 20 16 2.2929 -1.4342 -0.0006 21 6 2.5194 -1.8268 1.7558 22 8 1.3969 -2.3559 -0.6060 23 8 3.5394 -1.1189 -0.6058 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5140 27 1 3.1858 1.1176 0.4342 28 1 1.6502 2.0042 0.5896 29 1 2.7318 -0.1733 -2.2783 30 1 4.1890 0.7032 -1.7486 31 1 2.4402 1.4049 -4.1516 32 1 4.0641 0.6776 -4.2131 33 1 4.1579 3.1328 -4.5900 34 1 5.0081 2.6737 -3.0954 35 1 4.6995 5.0272 -2.5059 36 1 3.0581 5.6294 -2.1726 37 1 4.5203 7.2450 -2.6444 38 1 3.9797 3.0890 -0.9536 39 1 2.3742 3.8531 -0.8752 40 1 1.5453 -1.9195 2.2360 41 1 3.0627 -2.7670 1.8509 42 1 3.0867 -1.0295 2.2361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352571655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:56 Heat of formation + Delta-G solvation = -69.623621 kcal Electronic energy + Delta-G solvation = -22477.568474 eV Core-core repulsion = 19198.722925 eV Total energy + Delta-G solvation = -3278.845549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.86007 -37.30662 -36.46897 -36.04344 -33.65970 -31.82687 -31.02183 -29.80552 -27.35399 -26.30862 -24.88488 -23.27508 -22.02864 -20.83372 -19.26414 -18.99127 -17.65177 -16.84876 -16.60366 -16.44205 -15.09135 -14.89725 -14.53694 -14.17293 -13.83914 -13.68462 -13.60454 -13.52561 -13.33126 -13.27677 -12.97122 -12.62974 -12.36709 -12.17808 -11.88397 -11.78925 -11.58082 -11.53287 -11.17828 -11.12380 -10.77491 -10.65817 -10.56638 -10.13984 -10.05359 -9.94618 -9.59361 -9.14839 -8.59401 -8.33332 -7.23576 -6.32999 -4.01166 0.00599 2.39841 3.47553 3.49826 3.65837 3.68234 3.87342 4.29175 4.52049 4.55287 4.60042 4.78833 5.03614 5.19203 5.23181 5.27964 5.33220 5.42578 5.48526 5.57304 5.64517 5.70724 5.80455 5.91609 5.97566 6.12613 6.30149 6.33894 6.37377 6.46984 6.51204 6.62540 6.83034 6.91975 7.07499 7.17844 7.88263 8.08384 8.39268 8.64546 8.91851 9.69370 11.06174 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.038205 B = 0.003515 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.706787 B = 7964.461083 C = 8132.395826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.999 5.999 3 C 0.130 3.870 4 C -0.102 4.102 5 H 0.080 0.920 6 C -0.103 4.103 7 C -0.119 4.119 8 C 0.066 3.934 9 N -0.529 5.529 10 C 0.183 3.817 11 C -0.586 4.586 12 H 0.057 0.943 13 C 0.013 3.987 14 N -0.916 5.916 15 Si 1.072 2.928 16 H -0.287 1.287 17 H -0.284 1.284 18 H -0.288 1.288 19 C 0.063 3.937 20 S 2.603 3.397 21 C -0.678 4.678 22 O -0.957 6.957 23 O -0.939 6.939 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.017 0.983 35 H -0.021 1.021 36 H 0.019 0.981 37 H 0.266 0.734 38 H 0.022 0.978 39 H 0.065 0.935 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.069 -18.369 12.456 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.837 5.837 3 C 0.005 3.995 4 C -0.123 4.123 5 H 0.098 0.902 6 C -0.141 4.141 7 C -0.157 4.157 8 C -0.062 4.062 9 N -0.254 5.254 10 C 0.058 3.942 11 C -0.625 4.625 12 H 0.075 0.925 13 C -0.190 4.190 14 N -0.553 5.553 15 Si 0.900 3.100 16 H -0.214 1.214 17 H -0.209 1.209 18 H -0.215 1.215 19 C -0.066 4.066 20 S 2.695 3.305 21 C -0.827 4.827 22 O -0.948 6.948 23 O -0.929 6.929 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.036 0.964 35 H -0.003 1.003 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.971 -17.502 10.575 21.303 hybrid contribution 0.366 -1.199 2.191 2.525 sum -5.605 -18.702 12.766 23.327 Atomic orbital electron populations 1.21442 0.78303 1.02467 1.02717 1.57403 1.15127 1.21442 1.89722 1.21412 0.95882 0.84317 0.97925 1.21602 1.00731 0.95287 0.94632 0.90161 1.21701 1.00168 0.96632 0.95595 1.21660 1.01085 0.96226 0.96736 1.21938 0.92829 0.91663 0.99779 1.61894 1.50107 1.03745 1.09615 1.19803 0.92288 0.83747 0.98391 1.21984 1.45568 1.00963 0.93945 0.92478 1.25842 0.93790 0.93714 1.05671 1.70796 1.43428 1.38989 1.02060 0.83496 0.76417 0.76072 0.73980 1.21393 1.20897 1.21493 1.21957 0.98166 0.94525 0.91999 1.05222 0.74613 0.73318 0.77351 1.30620 1.11427 1.11948 1.28693 1.93605 1.64878 1.62870 1.73412 1.93716 1.44409 1.82357 1.72404 0.92087 0.91518 0.90893 0.90262 0.90227 0.93098 0.90987 0.91866 0.92436 0.89994 0.96441 1.00320 0.96313 0.92389 0.96010 0.91648 0.85737 0.85679 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 10.24 59.85 0.61 1.35 16 2 N -1.00 -9.30 2.85 -121.76 -0.35 -9.64 16 3 C 0.13 1.37 4.99 -4.04 -0.02 1.35 16 4 C -0.10 -1.50 2.56 -90.54 -0.23 -1.73 16 5 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 6 C -0.10 -1.65 3.61 -26.61 -0.10 -1.75 16 7 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 8 C 0.07 1.38 5.30 -3.83 -0.02 1.36 16 9 N -0.53 -11.77 4.65 -236.11 -1.10 -12.86 16 10 C 0.18 4.84 4.03 -4.98 -0.02 4.82 16 11 C -0.59 -16.91 8.43 -34.44 -0.29 -17.20 16 12 H 0.06 1.65 7.14 -52.48 -0.37 1.28 16 13 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 14 N -0.92 -28.19 13.65 55.43 0.76 -27.44 16 15 Si 1.07 25.67 29.90 -169.99 -5.08 20.59 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.06 1.13 4.75 -3.84 -0.02 1.11 16 20 S 2.60 25.00 5.35 -107.50 -0.58 24.43 16 21 C -0.68 -3.71 10.99 101.05 1.11 -2.60 16 22 O -0.96 -12.14 17.09 -57.54 -0.98 -13.12 16 23 O -0.94 -12.07 12.97 -57.54 -0.75 -12.81 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.39 7.79 -51.93 -0.40 -0.01 16 26 H 0.07 0.44 7.94 -51.93 -0.41 0.03 16 27 H 0.08 0.77 7.61 -51.93 -0.40 0.37 16 28 H 0.08 0.70 7.96 -51.93 -0.41 0.28 16 29 H 0.05 0.79 5.94 -51.93 -0.31 0.48 16 30 H 0.07 1.20 7.24 -51.93 -0.38 0.83 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.86 6.72 -51.93 -0.35 1.51 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H -0.02 -0.58 7.99 -51.93 -0.41 -1.00 16 36 H 0.02 0.52 7.85 -51.93 -0.41 0.11 16 37 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 1.12 8.01 -51.93 -0.42 0.71 16 40 H 0.12 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.12 0.56 8.14 -51.92 -0.42 0.13 16 42 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -35.57 336.91 -9.40 -44.97 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -7.17 Total: -3.93 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 0.77 Total: -15.25 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.69 Total: -49.94 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -1.73 Total: -25.93 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Atomic # 16 Polarization: 25.00 SS G_CDS: -0.58 Total: 24.43 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.57 -9.40 -44.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352571655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.656 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds