Wall clock time and date at job start Fri Apr 10 2020 17:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.47191 * 2 1 4 4 C 1.46899 * 111.00373 * 293.95677 * 3 2 1 5 5 C 1.53237 * 109.34353 * 172.74664 * 4 3 2 6 6 N 1.47079 * 108.52089 * 53.83046 * 5 4 3 7 7 S 1.65596 * 120.88294 * 128.54605 * 6 5 4 8 8 O 1.42103 * 104.27826 * 219.86651 * 7 6 5 9 9 O 1.42101 * 104.27602 * 347.71963 * 7 6 5 10 10 C 1.81400 * 104.45299 * 103.79328 * 7 6 5 11 11 C 1.52991 * 109.47154 * 179.97438 * 10 7 6 12 12 C 1.50706 * 109.47229 * 180.02562 * 11 10 7 13 13 H 1.08000 * 119.99647 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00295 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99990 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99708 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47150 * 90.00510 * 16 14 12 18 18 H 1.48508 * 109.46871 * 210.00398 * 16 14 12 19 19 H 1.48496 * 109.47351 * 330.00224 * 16 14 12 20 20 C 1.47081 * 118.23609 * 308.81660 * 6 5 4 21 21 H 1.09002 * 109.63330 * 291.47418 * 20 6 5 22 22 C 1.53006 * 109.62974 * 170.89338 * 20 6 5 23 23 C 1.46899 * 110.99941 * 169.65286 * 3 2 1 24 24 H 1.09000 * 109.46458 * 299.99645 * 1 2 3 25 25 H 1.08996 * 109.46818 * 59.99681 * 1 2 3 26 26 H 1.08997 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46949 * 240.00242 * 2 1 3 28 28 H 1.09001 * 109.47269 * 120.00358 * 2 1 3 29 29 H 1.09001 * 109.49024 * 52.78617 * 4 3 2 30 30 H 1.09003 * 109.51632 * 292.72025 * 4 3 2 31 31 H 1.08999 * 109.62572 * 294.12347 * 5 4 3 32 32 H 1.08996 * 109.79179 * 173.63550 * 5 4 3 33 33 H 1.08994 * 109.47016 * 300.00179 * 10 7 6 34 34 H 1.09005 * 109.46868 * 59.99693 * 10 7 6 35 35 H 1.09003 * 109.47464 * 299.99845 * 11 10 7 36 36 H 1.09005 * 109.47408 * 60.00117 * 11 10 7 37 37 H 0.97005 * 119.99766 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.46750 * 51.75298 * 22 20 6 39 39 H 1.09001 * 109.47169 * 171.75121 * 22 20 6 40 40 H 1.08995 * 109.46760 * 291.75360 * 22 20 6 41 41 H 1.08993 * 109.49480 * 307.21891 * 23 3 2 42 42 H 1.09005 * 109.49239 * 67.26754 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0670 -1.2532 5 6 2.0353 3.5511 -1.1423 6 7 3.4490 3.6564 -0.7503 7 16 4.4999 4.6077 -1.6065 8 8 5.7005 3.8489 -1.6538 9 8 3.7908 4.9317 -2.7946 10 6 4.7194 6.0828 -0.5738 11 6 5.6818 7.0505 -1.2649 12 6 5.8647 8.2758 -0.4067 13 1 5.3459 8.3562 0.5371 14 6 6.6934 9.2944 -0.8268 15 7 6.8525 10.3638 -0.0781 16 14 7.5902 9.1554 -2.4596 17 1 6.7472 9.7316 -3.5380 18 1 8.8737 9.8986 -2.3842 19 1 7.8626 7.7258 -2.7547 20 6 3.9059 2.8896 0.4187 21 1 3.4600 3.3016 1.3240 22 6 5.4314 2.9593 0.5148 23 6 3.4671 1.4315 0.2463 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.6000 1.9683 -1.4348 30 1 2.2222 1.6173 -2.0787 31 1 1.4096 4.0266 -0.3871 32 1 1.8846 4.0411 -2.1042 33 1 3.7557 6.5706 -0.4276 34 1 5.1295 5.7915 0.3932 35 1 6.6455 6.5625 -1.4107 36 1 5.2721 7.3418 -2.2321 37 1 7.4359 11.0803 -0.3735 38 1 5.7508 4.0006 0.4726 39 1 5.7566 2.5174 1.4567 40 1 5.8732 2.4097 -0.3162 41 1 3.7001 0.8720 1.1522 42 1 3.9944 0.9902 -0.5995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352619715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:58 Heat of formation + Delta-G solvation = -58.325629 kcal Electronic energy + Delta-G solvation = -22580.373226 eV Core-core repulsion = 19302.017595 eV Total energy + Delta-G solvation = -3278.355631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.38530 -37.01689 -35.76540 -35.36049 -33.96893 -32.44292 -31.47948 -30.81001 -27.74999 -26.11059 -25.22645 -23.42093 -21.70065 -21.09366 -20.62812 -18.53978 -17.39393 -16.87211 -16.40787 -15.69290 -15.59642 -15.37939 -15.05365 -14.73990 -14.43787 -14.24185 -13.66237 -13.53557 -12.99180 -12.80284 -12.61334 -12.51359 -12.24623 -11.98438 -11.89373 -11.82822 -11.62053 -11.48900 -11.34427 -11.24125 -11.21035 -10.99737 -10.84510 -10.45498 -10.25027 -10.13325 -9.71827 -9.41966 -8.96505 -8.66430 -8.46392 -6.16588 -4.17806 0.64759 2.88372 3.26253 3.33547 3.37653 3.62783 4.17745 4.35630 4.46578 4.50279 4.65142 4.86818 4.90825 5.02122 5.14447 5.15751 5.19807 5.20486 5.25857 5.40008 5.46872 5.51727 5.55364 5.60026 5.61182 5.70440 5.72858 5.86180 5.94483 6.00852 6.08253 6.29284 6.50369 6.64824 6.82336 6.84215 6.86064 6.94031 7.54726 8.36843 8.84813 9.43090 10.95838 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.035541 B = 0.004044 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.625817 B = 6921.900683 C = 7005.401178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.042 3.958 5 C 0.121 3.879 6 N -1.004 6.004 7 S 2.587 3.413 8 O -0.961 6.961 9 O -0.969 6.969 10 C -0.583 4.583 11 C -0.006 4.006 12 C -0.519 4.519 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 C 0.159 3.841 21 H 0.082 0.918 22 C -0.185 4.185 23 C 0.050 3.950 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.032 0.968 36 H 0.027 0.973 37 H 0.266 0.734 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.799 -20.196 1.232 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.088 4.088 5 C -0.005 4.005 6 N -0.842 5.842 7 S 2.687 3.313 8 O -0.951 6.951 9 O -0.959 6.959 10 C -0.716 4.716 11 C -0.045 4.045 12 C -0.558 4.558 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.186 1.186 20 C 0.052 3.948 21 H 0.100 0.900 22 C -0.244 4.244 23 C -0.079 4.079 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.579 -20.023 0.761 22.659 hybrid contribution 0.695 0.019 -0.790 1.052 sum -9.884 -20.004 -0.029 22.313 Atomic orbital electron populations 1.21808 0.94796 1.01457 1.02609 1.22073 0.96174 0.88778 1.00729 1.61915 1.14081 1.15538 1.34767 1.22492 1.01242 0.94726 0.90299 1.21525 0.81044 0.95986 1.01937 1.58016 1.21050 1.61132 1.43969 1.05742 0.73634 0.76584 0.75328 1.93597 1.46871 1.67911 1.86762 1.93501 1.72923 1.85324 1.44198 1.30393 1.10148 1.16701 1.14393 1.19403 0.93287 0.95348 0.96509 1.20854 1.28578 0.99841 1.06529 0.90394 1.24984 0.96022 0.94965 0.97126 1.69883 1.38081 1.07599 1.37792 0.86931 0.79856 0.79213 0.84485 1.19665 1.20733 1.18638 1.21040 0.94722 0.90703 0.88303 0.89971 1.22687 0.92963 1.04403 1.04306 1.22490 0.87396 0.96796 1.01267 0.91735 0.92582 0.92408 0.95033 0.90752 0.89407 0.94408 0.90753 0.88033 0.85643 0.85598 0.94981 0.95497 0.92376 0.91553 0.91053 0.88427 0.89777 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.85 37.16 0.37 -0.66 16 2 C 0.05 0.41 5.68 -3.82 -0.02 0.39 16 3 N -0.54 -5.43 4.63 -234.32 -1.08 -6.51 16 4 C 0.04 0.44 5.46 -3.70 -0.02 0.42 16 5 C 0.12 1.43 6.66 -3.60 -0.02 1.41 16 6 N -1.00 -13.70 3.25 -106.20 -0.34 -14.05 16 7 S 2.59 44.89 4.85 -107.50 -0.52 44.37 16 8 O -0.96 -18.24 13.67 -57.54 -0.79 -19.03 16 9 O -0.97 -19.11 16.31 -57.54 -0.94 -20.05 16 10 C -0.58 -10.88 5.85 37.15 0.22 -10.66 16 11 C -0.01 -0.15 4.05 -27.89 -0.11 -0.26 16 12 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 13 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 16 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 20 C 0.16 1.88 3.67 -67.49 -0.25 1.63 16 21 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 22 C -0.19 -2.34 7.62 37.16 0.28 -2.05 16 23 C 0.05 0.52 4.91 -3.70 -0.02 0.50 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.39 6.41 -51.93 -0.33 0.05 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 28 H 0.07 0.54 7.96 -51.93 -0.41 0.13 16 29 H 0.09 0.75 6.18 -51.93 -0.32 0.43 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.26 6.62 -51.93 -0.34 0.91 16 33 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 34 H 0.13 2.14 6.65 -51.92 -0.35 1.79 16 35 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 36 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.07 0.93 4.80 -51.93 -0.25 0.68 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.38 6.46 -51.93 -0.34 1.05 16 41 H 0.08 0.72 7.98 -51.93 -0.41 0.31 16 42 H 0.04 0.47 8.11 -51.93 -0.42 0.05 16 LS Contribution 331.13 15.07 4.99 4.99 Total: -1.00 -33.22 331.13 -9.50 -42.72 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.91 Total: -0.75 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -0.01 Total: -22.21 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.66 Total: -46.92 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.73 Total: -39.08 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: 44.89 SS G_CDS: -0.52 Total: 44.37 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.22 -9.50 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352619715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.601 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds