Wall clock time and date at job start Fri Apr 10 2020 17:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.47191 * 2 1 4 4 C 1.46899 * 111.00373 * 293.95677 * 3 2 1 5 5 C 1.53237 * 109.34353 * 172.74664 * 4 3 2 6 6 N 1.47079 * 108.52089 * 53.83046 * 5 4 3 7 7 S 1.65596 * 120.88294 * 128.54605 * 6 5 4 8 8 O 1.42103 * 104.27826 * 219.86651 * 7 6 5 9 9 O 1.42101 * 104.27602 * 347.71963 * 7 6 5 10 10 C 1.81400 * 104.45299 * 103.79328 * 7 6 5 11 11 C 1.52991 * 109.47154 * 179.97438 * 10 7 6 12 12 C 1.50706 * 109.47229 * 180.02562 * 11 10 7 13 13 H 1.08000 * 119.99647 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00295 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99990 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99708 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47150 * 90.00510 * 16 14 12 18 18 H 1.48508 * 109.46871 * 210.00398 * 16 14 12 19 19 H 1.48496 * 109.47351 * 330.00224 * 16 14 12 20 20 C 1.47081 * 118.23609 * 308.81660 * 6 5 4 21 21 H 1.09002 * 109.63330 * 291.47418 * 20 6 5 22 22 C 1.53006 * 109.62974 * 170.89338 * 20 6 5 23 23 C 1.46899 * 110.99941 * 169.65286 * 3 2 1 24 24 H 1.09000 * 109.46458 * 299.99645 * 1 2 3 25 25 H 1.08996 * 109.46818 * 59.99681 * 1 2 3 26 26 H 1.08997 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46949 * 240.00242 * 2 1 3 28 28 H 1.09001 * 109.47269 * 120.00358 * 2 1 3 29 29 H 1.09001 * 109.49024 * 52.78617 * 4 3 2 30 30 H 1.09003 * 109.51632 * 292.72025 * 4 3 2 31 31 H 1.08999 * 109.62572 * 294.12347 * 5 4 3 32 32 H 1.08996 * 109.79179 * 173.63550 * 5 4 3 33 33 H 1.08994 * 109.47016 * 300.00179 * 10 7 6 34 34 H 1.09005 * 109.46868 * 59.99693 * 10 7 6 35 35 H 1.09003 * 109.47464 * 299.99845 * 11 10 7 36 36 H 1.09005 * 109.47408 * 60.00117 * 11 10 7 37 37 H 0.97005 * 119.99766 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.46750 * 51.75298 * 22 20 6 39 39 H 1.09001 * 109.47169 * 171.75121 * 22 20 6 40 40 H 1.08995 * 109.46760 * 291.75360 * 22 20 6 41 41 H 1.08993 * 109.49480 * 307.21891 * 23 3 2 42 42 H 1.09005 * 109.49239 * 67.26754 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0670 -1.2532 5 6 2.0353 3.5511 -1.1423 6 7 3.4490 3.6564 -0.7503 7 16 4.4999 4.6077 -1.6065 8 8 5.7005 3.8489 -1.6538 9 8 3.7908 4.9317 -2.7946 10 6 4.7194 6.0828 -0.5738 11 6 5.6818 7.0505 -1.2649 12 6 5.8647 8.2758 -0.4067 13 1 5.3459 8.3562 0.5371 14 6 6.6934 9.2944 -0.8268 15 7 6.8525 10.3638 -0.0781 16 14 7.5902 9.1554 -2.4596 17 1 6.7472 9.7316 -3.5380 18 1 8.8737 9.8986 -2.3842 19 1 7.8626 7.7258 -2.7547 20 6 3.9059 2.8896 0.4187 21 1 3.4600 3.3016 1.3240 22 6 5.4314 2.9593 0.5148 23 6 3.4671 1.4315 0.2463 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.6000 1.9683 -1.4348 30 1 2.2222 1.6173 -2.0787 31 1 1.4096 4.0266 -0.3871 32 1 1.8846 4.0411 -2.1042 33 1 3.7557 6.5706 -0.4276 34 1 5.1295 5.7915 0.3932 35 1 6.6455 6.5625 -1.4107 36 1 5.2721 7.3418 -2.2321 37 1 7.4359 11.0803 -0.3735 38 1 5.7508 4.0006 0.4726 39 1 5.7566 2.5174 1.4567 40 1 5.8732 2.4097 -0.3162 41 1 3.7001 0.8720 1.1522 42 1 3.9944 0.9902 -0.5995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352619715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:32:58 Heat of formation + Delta-G solvation = -83.132222 kcal Electronic energy + Delta-G solvation = -22581.448921 eV Core-core repulsion = 19302.017595 eV Total energy + Delta-G solvation = -3279.431325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.25390 -38.43257 -37.09489 -36.38827 -35.92467 -33.59797 -33.28448 -31.51019 -28.68311 -27.95065 -26.17157 -24.25719 -23.19245 -22.30973 -21.55024 -19.90844 -19.18787 -18.18809 -17.62537 -17.12837 -16.51692 -16.35136 -16.32069 -16.04749 -15.61300 -15.34465 -15.25620 -14.83695 -14.30256 -14.10009 -13.82078 -13.63512 -13.44431 -13.25399 -13.07825 -13.01934 -12.92343 -12.78651 -12.62618 -12.31612 -12.25991 -12.22581 -11.98019 -11.92285 -11.72624 -11.61755 -11.35941 -11.21671 -10.85739 -10.04791 -9.27911 -8.37782 -6.43715 -0.75028 1.30907 1.32459 1.42780 1.65262 2.28341 2.75851 2.89164 2.95933 3.17978 3.48234 3.84821 3.92279 3.96855 4.08903 4.15892 4.23883 4.33219 4.42026 4.45758 4.52946 4.63077 4.64847 4.73120 4.74576 4.78152 4.92105 4.94666 5.03759 5.06130 5.13948 5.15649 5.16767 5.40920 5.45205 5.50772 5.65053 6.05685 6.13442 6.15764 6.62177 7.20700 8.77881 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.035541 B = 0.004044 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.625817 B = 6921.900683 C = 7005.401178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 N -0.541 5.541 4 C 0.044 3.956 5 C 0.113 3.887 6 N -0.998 5.998 7 S 2.612 3.388 8 O -0.978 6.978 9 O -0.993 6.993 10 C -0.590 4.590 11 C -0.014 4.014 12 C -0.528 4.528 13 H 0.049 0.951 14 C 0.014 3.986 15 N -0.939 5.939 16 Si 0.925 3.075 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.250 1.250 20 C 0.155 3.845 21 H 0.099 0.901 22 C -0.188 4.188 23 C 0.052 3.948 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.029 0.971 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.025 0.975 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.270 0.730 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.673 -22.247 1.154 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 N -0.266 5.266 4 C -0.086 4.086 5 C -0.012 4.012 6 N -0.837 5.837 7 S 2.710 3.290 8 O -0.968 6.968 9 O -0.984 6.984 10 C -0.721 4.721 11 C -0.053 4.053 12 C -0.567 4.567 13 H 0.067 0.933 14 C -0.185 4.185 15 N -0.579 5.579 16 Si 0.747 3.253 17 H -0.185 1.185 18 H -0.197 1.197 19 H -0.174 1.174 20 C 0.049 3.951 21 H 0.117 0.883 22 C -0.247 4.247 23 C -0.078 4.078 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.044 0.956 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.456 -22.068 0.687 24.874 hybrid contribution 0.885 0.586 -0.659 1.249 sum -10.571 -21.482 0.029 23.942 Atomic orbital electron populations 1.21780 0.93807 1.02298 1.02381 1.22162 0.96957 0.87621 1.01139 1.61960 1.13647 1.16757 1.34262 1.22493 1.02355 0.93499 0.90229 1.21762 0.79918 0.97363 1.02162 1.57773 1.21482 1.60058 1.44435 1.04806 0.73471 0.75979 0.74708 1.93589 1.48326 1.67849 1.87037 1.93464 1.73467 1.85764 1.45655 1.30405 1.09457 1.17041 1.15152 1.19346 0.94790 0.94890 0.96295 1.21167 1.27854 1.01588 1.06069 0.93308 1.25871 0.97073 0.94653 1.00853 1.70008 1.39372 1.08637 1.39896 0.86028 0.79049 0.80009 0.80178 1.18525 1.19730 1.17354 1.21273 0.94298 0.91575 0.87944 0.88296 1.22685 0.93566 1.03202 1.05206 1.22492 0.87669 0.95687 1.01928 0.92022 0.92670 0.91111 0.95295 0.89668 0.87294 0.95640 0.89012 0.88802 0.84647 0.84316 0.94921 0.95366 0.92064 0.93283 0.88150 0.90165 0.87417 0.95327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.85 71.98 0.71 -0.89 16 2 C 0.05 0.65 5.68 86.31 0.49 1.14 16 3 N -0.54 -9.45 4.63 -895.25 -4.14 -13.60 16 4 C 0.04 0.82 5.46 86.38 0.47 1.29 16 5 C 0.11 2.47 6.66 86.35 0.58 3.05 16 6 N -1.00 -25.74 3.25 -489.90 -1.59 -27.33 16 7 S 2.61 88.81 4.85 -56.49 -0.27 88.54 16 8 O -0.98 -36.63 13.67 -127.65 -1.74 -38.37 16 9 O -0.99 -38.60 16.31 -127.65 -2.08 -40.69 16 10 C -0.59 -21.80 5.85 71.98 0.42 -21.37 16 11 C -0.01 -0.68 4.05 29.85 0.12 -0.55 16 12 C -0.53 -30.16 9.66 25.60 0.25 -29.91 16 13 H 0.05 2.98 7.99 -2.91 -0.02 2.95 16 14 C 0.01 0.82 5.47 84.65 0.46 1.29 16 15 N -0.94 -58.06 13.96 21.45 0.30 -57.76 16 16 Si 0.92 44.13 27.47 68.60 1.88 46.01 16 17 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 20 C 0.15 3.33 3.67 44.96 0.17 3.49 16 21 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 22 C -0.19 -4.46 7.62 71.98 0.55 -3.91 16 23 C 0.05 0.95 4.91 86.38 0.42 1.38 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.61 6.41 -2.39 -0.02 0.60 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 28 H 0.08 0.98 7.96 -2.39 -0.02 0.96 16 29 H 0.11 1.57 6.18 -2.39 -0.01 1.56 16 30 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.09 2.22 6.62 -2.39 -0.02 2.20 16 33 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 34 H 0.14 4.68 6.65 -2.39 -0.02 4.67 16 35 H 0.03 1.54 7.20 -2.39 -0.02 1.52 16 36 H 0.03 1.32 7.57 -2.38 -0.02 1.31 16 37 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 38 H 0.05 1.33 4.80 -2.38 -0.01 1.32 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.20 6.46 -2.39 -0.02 2.19 16 41 H 0.11 1.48 7.98 -2.39 -0.02 1.46 16 42 H 0.03 0.60 8.11 -2.38 -0.02 0.59 16 Total: -1.00 -71.65 331.13 -2.08 -73.73 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.93 Total: 14.45 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 4.64 Total: -44.99 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -5.43 Total: -98.68 kcal Atomic # 8 Polarization: -75.23 SS G_CDS: -3.83 Total: -79.06 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Atomic # 16 Polarization: 88.81 SS G_CDS: -0.27 Total: 88.54 kcal Total: -71.65 -2.08 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352619715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.401 kcal (2) G-P(sol) polarization free energy of solvation -71.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds