Wall clock time and date at job start Fri Apr 10 2020 17:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 107.82827 * 2 1 4 4 C 1.54432 * 107.87497 * 243.50323 * 2 1 3 5 5 C 1.54883 * 109.63093 * 197.06083 * 4 2 1 6 6 N 1.44054 * 110.27882 * 321.54716 * 5 4 2 7 7 C 1.46905 * 111.00061 * 220.66676 * 6 5 4 8 8 C 1.46180 * 106.06866 * 100.00066 * 6 5 4 9 9 C 1.46818 * 114.39014 * 267.64634 * 8 6 5 10 10 N 1.43619 * 108.13248 * 116.70290 * 2 1 3 11 11 S 1.65602 * 120.56648 * 31.32435 * 10 2 1 12 12 O 1.42100 * 104.27704 * 159.50768 * 11 10 2 13 13 O 1.42100 * 104.27229 * 31.65212 * 11 10 2 14 14 C 1.81403 * 104.44922 * 275.58265 * 11 10 2 15 15 C 1.52996 * 109.46795 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.46958 * 179.97438 * 15 14 11 17 17 H 1.08003 * 119.99804 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00352 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00395 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99744 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46904 * 90.00279 * 20 18 16 22 22 H 1.48506 * 109.46888 * 330.00084 * 20 18 16 23 23 H 1.48506 * 109.46932 * 210.00536 * 20 18 16 24 24 H 1.08996 * 109.46711 * 297.30555 * 1 2 3 25 25 H 1.08995 * 109.46494 * 57.30629 * 1 2 3 26 26 H 1.09003 * 109.47118 * 177.30864 * 1 2 3 27 27 H 1.08999 * 109.51986 * 76.98213 * 4 2 1 28 28 H 1.09002 * 109.38178 * 317.05901 * 4 2 1 29 29 H 1.09003 * 109.33787 * 201.29992 * 5 4 2 30 30 H 1.09001 * 109.20488 * 81.71040 * 5 4 2 31 31 H 1.08997 * 109.47067 * 306.24959 * 7 6 5 32 32 H 1.09001 * 109.46899 * 66.24597 * 7 6 5 33 33 H 1.08996 * 109.46970 * 186.24600 * 7 6 5 34 34 H 1.09005 * 108.49785 * 146.38122 * 8 6 5 35 35 H 1.08996 * 108.37826 * 28.82561 * 8 6 5 36 36 H 1.08997 * 109.97030 * 298.67369 * 9 8 6 37 37 H 1.08996 * 110.04048 * 177.40256 * 9 8 6 38 38 H 1.08997 * 109.47235 * 59.99681 * 14 11 10 39 39 H 1.08997 * 109.47085 * 299.99823 * 14 11 10 40 40 H 1.08997 * 109.47131 * 60.00056 * 15 14 11 41 41 H 1.08997 * 109.47518 * 299.99996 * 15 14 11 42 42 H 0.97002 * 120.00582 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8637 1.0376 0.0000 4 6 2.0040 -0.6557 -1.3154 5 6 3.4911 -1.0687 -1.1846 6 7 4.2226 -0.0728 -0.4442 7 6 5.5457 0.1590 -1.0390 8 6 4.3437 -0.5891 0.9180 9 6 3.2735 -0.1594 1.8266 10 7 1.9770 -0.6133 1.2193 11 16 1.0815 -1.8055 1.9398 12 8 2.0084 -2.4820 2.7780 13 8 0.4510 -2.4737 0.8557 14 6 -0.1434 -0.9122 2.9360 15 6 -1.0426 -1.9166 3.6595 16 6 -2.0598 -1.1745 4.4876 17 1 -2.0646 -0.0945 4.4965 18 6 -2.9842 -1.8742 5.2337 19 7 -3.8722 -1.2266 5.9560 20 14 -2.9763 -3.7422 5.2177 21 1 -2.0923 -4.2427 6.3009 22 1 -2.4734 -4.2238 3.9060 23 1 -4.3569 -4.2449 5.4334 24 1 -0.3632 0.4714 0.9131 25 1 -0.3632 0.5551 -0.8648 26 1 -0.3633 -1.0266 -0.0483 27 1 1.8956 0.0537 -2.1357 28 1 1.3987 -1.5393 -1.5178 29 1 3.9260 -1.1712 -2.1788 30 1 3.5533 -2.0240 -0.6632 31 1 6.0729 -0.7903 -1.1333 32 1 5.4272 0.6083 -2.0250 33 1 6.1186 0.8309 -0.4000 34 1 5.2986 -0.2608 1.3286 35 1 4.3435 -1.6782 0.8740 36 1 3.2798 0.9263 1.9222 37 1 3.4074 -0.6198 2.8055 38 1 -0.7514 -0.2832 2.2859 39 1 0.3691 -0.2891 3.6688 40 1 -0.4348 -2.5459 4.3095 41 1 -1.5550 -2.5395 2.9264 42 1 -4.5224 -1.7189 6.4812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354490207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:04 Heat of formation + Delta-G solvation = -46.461584 kcal Electronic energy + Delta-G solvation = -23023.979744 eV Core-core repulsion = 19746.138577 eV Total energy + Delta-G solvation = -3277.841167 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -39.60630 -37.04005 -35.88917 -35.44607 -33.96944 -33.11884 -31.50487 -29.45311 -28.29015 -26.03713 -25.21926 -23.54303 -21.93627 -21.02953 -20.43821 -18.39382 -17.23219 -16.84148 -16.56535 -15.91493 -15.39092 -15.32117 -14.94721 -14.83707 -14.27145 -13.85095 -13.73244 -13.29649 -13.12342 -12.84968 -12.60580 -12.55586 -12.38379 -11.90796 -11.80430 -11.70891 -11.52020 -11.43852 -11.36569 -11.19890 -11.00639 -10.86666 -10.63567 -10.36077 -10.18777 -10.10195 -9.68183 -9.38215 -8.80686 -8.65289 -8.61482 -6.15504 -4.16532 0.70146 2.94501 3.26963 3.34258 3.38578 3.78522 4.21488 4.36670 4.46488 4.61235 4.76533 4.91876 4.97005 5.04646 5.15176 5.17263 5.20018 5.36199 5.43067 5.46604 5.55657 5.58936 5.59973 5.66951 5.68848 5.83178 5.83944 5.92493 5.99577 6.08407 6.21731 6.38693 6.57508 6.82623 6.85302 6.86248 6.93988 6.98322 7.56222 8.38123 8.85941 9.44345 10.96927 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.033589 B = 0.004504 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.405474 B = 6215.883711 C = 6334.391457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.174 3.826 3 H 0.081 0.919 4 C -0.124 4.124 5 C 0.044 3.956 6 N -0.517 5.517 7 C 0.022 3.978 8 C 0.026 3.974 9 C 0.130 3.870 10 N -0.995 5.995 11 S 2.588 3.412 12 O -0.971 6.971 13 O -0.961 6.961 14 C -0.590 4.590 15 C -0.006 4.006 16 C -0.518 4.518 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.868 3.132 21 H -0.271 1.271 22 H -0.262 1.262 23 H -0.282 1.282 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.026 0.974 41 H 0.032 0.968 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.780 3.959 -14.010 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C 0.067 3.933 3 H 0.099 0.901 4 C -0.164 4.164 5 C -0.085 4.085 6 N -0.240 5.240 7 C -0.126 4.126 8 C -0.103 4.103 9 C 0.006 3.994 10 N -0.831 5.831 11 S 2.687 3.313 12 O -0.961 6.961 13 O -0.952 6.952 14 C -0.723 4.723 15 C -0.046 4.046 16 C -0.557 4.557 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.694 3.306 21 H -0.197 1.197 22 H -0.186 1.186 23 H -0.207 1.207 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.543 3.496 -14.028 21.970 hybrid contribution 0.117 -1.013 0.266 1.054 sum 16.660 2.482 -13.761 21.751 Atomic orbital electron populations 1.23315 0.95697 1.06584 1.03868 1.19937 0.92614 0.97380 0.83417 0.90123 1.22648 0.94802 1.01556 0.97397 1.22318 0.95165 0.93258 0.97746 1.62104 1.16228 1.43367 1.02301 1.22551 0.89653 0.99999 1.00375 1.21541 0.99239 0.98971 0.90548 1.20983 0.81293 1.00952 0.96213 1.57902 1.33388 1.58469 1.33363 1.05708 0.75598 0.74860 0.75113 1.93508 1.61164 1.71622 1.69831 1.93476 1.77507 1.72306 1.51880 1.30619 1.14705 1.13208 1.13739 1.19399 0.95175 0.93806 0.96178 1.20855 1.13256 0.95066 1.26549 0.90398 1.24979 0.94920 0.98529 0.94644 1.69876 1.18370 1.35962 1.29176 0.86943 0.77903 0.86127 0.79593 1.19675 1.18632 1.20730 0.91222 0.90423 0.87817 0.90926 0.90648 0.92191 0.93463 0.95610 0.91250 0.91315 0.91032 0.93301 0.90055 0.88125 0.85010 0.85764 0.95592 0.95019 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.06 7.66 37.16 0.28 -2.77 16 2 C 0.17 2.14 2.11 -68.70 -0.14 2.00 16 3 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 4 C -0.12 -1.41 5.93 -24.99 -0.15 -1.56 16 5 C 0.04 0.48 5.43 -4.35 -0.02 0.46 16 6 N -0.52 -5.21 4.39 -248.39 -1.09 -6.30 16 7 C 0.02 0.17 9.11 60.07 0.55 0.72 16 8 C 0.03 0.28 4.98 -7.17 -0.04 0.24 16 9 C 0.13 1.47 6.23 -4.93 -0.03 1.44 16 10 N -0.99 -13.50 2.78 -108.76 -0.30 -13.81 16 11 S 2.59 45.35 4.80 -107.50 -0.52 44.83 16 12 O -0.97 -19.16 16.60 -57.54 -0.95 -20.11 16 13 O -0.96 -18.56 14.82 -57.54 -0.85 -19.41 16 14 C -0.59 -11.08 5.72 37.16 0.21 -10.87 16 15 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 16 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 17 H 0.08 2.29 7.99 -52.48 -0.42 1.88 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 20 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H 0.07 0.90 5.49 -51.93 -0.29 0.61 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 1.57 5.21 -51.93 -0.27 1.30 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.95 7.97 -51.93 -0.41 0.54 16 29 H 0.06 0.56 7.59 -51.93 -0.39 0.16 16 30 H 0.05 0.59 6.61 -51.93 -0.34 0.25 16 31 H 0.03 0.19 8.11 -51.93 -0.42 -0.23 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.46 7.93 -51.93 -0.41 0.05 16 34 H 0.07 0.60 7.52 -51.93 -0.39 0.21 16 35 H 0.05 0.59 6.69 -51.93 -0.35 0.24 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.14 7.05 -51.93 -0.37 0.78 16 38 H 0.13 2.28 5.30 -51.93 -0.28 2.01 16 39 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16 40 H 0.03 0.62 7.57 -51.93 -0.39 0.22 16 41 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -33.15 327.14 -9.36 -42.51 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.80 Total: 0.32 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 0.12 Total: -23.52 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.62 Total: -46.47 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -1.81 Total: -39.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Atomic # 16 Polarization: 45.35 SS G_CDS: -0.52 Total: 44.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.15 -9.36 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354490207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.951 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds