Wall clock time and date at job start Fri Apr 10 2020 17:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 107.82827 * 2 1 4 4 C 1.54432 * 107.87497 * 243.50323 * 2 1 3 5 5 C 1.54883 * 109.63093 * 197.06083 * 4 2 1 6 6 N 1.44054 * 110.27882 * 321.54716 * 5 4 2 7 7 C 1.46905 * 111.00061 * 220.66676 * 6 5 4 8 8 C 1.46180 * 106.06866 * 100.00066 * 6 5 4 9 9 C 1.46818 * 114.39014 * 267.64634 * 8 6 5 10 10 N 1.43619 * 108.13248 * 116.70290 * 2 1 3 11 11 S 1.65602 * 120.56648 * 31.32435 * 10 2 1 12 12 O 1.42100 * 104.27704 * 159.50768 * 11 10 2 13 13 O 1.42100 * 104.27229 * 31.65212 * 11 10 2 14 14 C 1.81403 * 104.44922 * 275.58265 * 11 10 2 15 15 C 1.52996 * 109.46795 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.46958 * 179.97438 * 15 14 11 17 17 H 1.08003 * 119.99804 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00352 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00395 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99744 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46904 * 90.00279 * 20 18 16 22 22 H 1.48506 * 109.46888 * 330.00084 * 20 18 16 23 23 H 1.48506 * 109.46932 * 210.00536 * 20 18 16 24 24 H 1.08996 * 109.46711 * 297.30555 * 1 2 3 25 25 H 1.08995 * 109.46494 * 57.30629 * 1 2 3 26 26 H 1.09003 * 109.47118 * 177.30864 * 1 2 3 27 27 H 1.08999 * 109.51986 * 76.98213 * 4 2 1 28 28 H 1.09002 * 109.38178 * 317.05901 * 4 2 1 29 29 H 1.09003 * 109.33787 * 201.29992 * 5 4 2 30 30 H 1.09001 * 109.20488 * 81.71040 * 5 4 2 31 31 H 1.08997 * 109.47067 * 306.24959 * 7 6 5 32 32 H 1.09001 * 109.46899 * 66.24597 * 7 6 5 33 33 H 1.08996 * 109.46970 * 186.24600 * 7 6 5 34 34 H 1.09005 * 108.49785 * 146.38122 * 8 6 5 35 35 H 1.08996 * 108.37826 * 28.82561 * 8 6 5 36 36 H 1.08997 * 109.97030 * 298.67369 * 9 8 6 37 37 H 1.08996 * 110.04048 * 177.40256 * 9 8 6 38 38 H 1.08997 * 109.47235 * 59.99681 * 14 11 10 39 39 H 1.08997 * 109.47085 * 299.99823 * 14 11 10 40 40 H 1.08997 * 109.47131 * 60.00056 * 15 14 11 41 41 H 1.08997 * 109.47518 * 299.99996 * 15 14 11 42 42 H 0.97002 * 120.00582 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8637 1.0376 0.0000 4 6 2.0040 -0.6557 -1.3154 5 6 3.4911 -1.0687 -1.1846 6 7 4.2226 -0.0728 -0.4442 7 6 5.5457 0.1590 -1.0390 8 6 4.3437 -0.5891 0.9180 9 6 3.2735 -0.1594 1.8266 10 7 1.9770 -0.6133 1.2193 11 16 1.0815 -1.8055 1.9398 12 8 2.0084 -2.4820 2.7780 13 8 0.4510 -2.4737 0.8557 14 6 -0.1434 -0.9122 2.9360 15 6 -1.0426 -1.9166 3.6595 16 6 -2.0598 -1.1745 4.4876 17 1 -2.0646 -0.0945 4.4965 18 6 -2.9842 -1.8742 5.2337 19 7 -3.8722 -1.2266 5.9560 20 14 -2.9763 -3.7422 5.2177 21 1 -2.0923 -4.2427 6.3009 22 1 -2.4734 -4.2238 3.9060 23 1 -4.3569 -4.2449 5.4334 24 1 -0.3632 0.4714 0.9131 25 1 -0.3632 0.5551 -0.8648 26 1 -0.3633 -1.0266 -0.0483 27 1 1.8956 0.0537 -2.1357 28 1 1.3987 -1.5393 -1.5178 29 1 3.9260 -1.1712 -2.1788 30 1 3.5533 -2.0240 -0.6632 31 1 6.0729 -0.7903 -1.1333 32 1 5.4272 0.6083 -2.0250 33 1 6.1186 0.8309 -0.4000 34 1 5.2986 -0.2608 1.3286 35 1 4.3435 -1.6782 0.8740 36 1 3.2798 0.9263 1.9222 37 1 3.4074 -0.6198 2.8055 38 1 -0.7514 -0.2832 2.2859 39 1 0.3691 -0.2891 3.6688 40 1 -0.4348 -2.5459 4.3095 41 1 -1.5550 -2.5395 2.9264 42 1 -4.5224 -1.7189 6.4812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354490207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:04 Heat of formation + Delta-G solvation = -71.326083 kcal Electronic energy + Delta-G solvation = -23025.057950 eV Core-core repulsion = 19746.138577 eV Total energy + Delta-G solvation = -3278.919373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.47054 -38.43385 -37.08293 -36.71194 -35.92160 -34.07361 -33.49210 -30.28916 -29.27736 -27.89083 -26.01116 -24.53564 -23.25181 -22.48538 -21.41395 -19.83429 -19.11117 -17.96434 -17.75418 -17.17114 -16.61663 -16.43128 -16.26693 -15.95253 -15.79625 -15.28400 -14.85277 -14.62358 -14.30168 -13.96789 -13.87548 -13.77113 -13.48434 -13.30899 -13.17206 -13.09842 -12.97424 -12.74167 -12.54188 -12.40683 -12.21953 -12.01057 -11.97038 -11.74979 -11.69937 -11.57034 -11.28091 -11.12017 -10.84873 -9.90511 -9.39471 -8.37080 -6.42757 -0.70582 1.30784 1.32556 1.42826 1.71236 2.28760 2.79988 2.96587 3.03889 3.18544 3.53331 3.91494 3.93116 4.03913 4.10512 4.18704 4.25666 4.34946 4.42011 4.53382 4.57297 4.63739 4.73925 4.78057 4.84767 4.91288 4.92916 5.00791 5.03660 5.07294 5.08284 5.15250 5.16443 5.34383 5.46099 5.57813 5.85414 6.05784 6.16726 6.21476 6.62961 7.21606 8.78522 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.033589 B = 0.004504 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.405474 B = 6215.883711 C = 6334.391457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.171 3.829 3 H 0.101 0.899 4 C -0.124 4.124 5 C 0.045 3.955 6 N -0.519 5.519 7 C 0.021 3.979 8 C 0.025 3.975 9 C 0.123 3.877 10 N -0.986 5.986 11 S 2.610 3.390 12 O -0.994 6.994 13 O -0.981 6.981 14 C -0.597 4.597 15 C -0.014 4.014 16 C -0.527 4.527 17 H 0.050 0.950 18 C 0.015 3.985 19 N -0.939 5.939 20 Si 0.923 3.077 21 H -0.260 1.260 22 H -0.251 1.251 23 H -0.272 1.272 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.028 0.972 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.027 0.973 41 H 0.030 0.970 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.645 4.362 -15.387 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C 0.063 3.937 3 H 0.119 0.881 4 C -0.164 4.164 5 C -0.085 4.085 6 N -0.242 5.242 7 C -0.126 4.126 8 C -0.105 4.105 9 C 0.000 4.000 10 N -0.825 5.825 11 S 2.708 3.292 12 O -0.984 6.984 13 O -0.971 6.971 14 C -0.727 4.727 15 C -0.053 4.053 16 C -0.566 4.566 17 H 0.068 0.932 18 C -0.183 4.183 19 N -0.579 5.579 20 Si 0.746 3.254 21 H -0.185 1.185 22 H -0.175 1.175 23 H -0.197 1.197 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.408 3.902 -15.398 24.314 hybrid contribution -0.402 -1.010 0.635 1.259 sum 18.006 2.892 -14.763 23.464 Atomic orbital electron populations 1.23331 0.96372 1.05343 1.04832 1.20143 0.92151 0.98265 0.83092 0.88098 1.22664 0.94915 1.01341 0.97510 1.22289 0.95147 0.92519 0.98519 1.62099 1.17539 1.42597 1.01946 1.22630 0.88522 1.00416 1.01054 1.21527 1.00065 0.97838 0.91022 1.21290 0.80037 1.02474 0.96234 1.57661 1.33514 1.57850 1.33490 1.04839 0.74992 0.74997 0.74407 1.93472 1.61528 1.72662 1.70727 1.93462 1.78152 1.73380 1.52125 1.30657 1.15011 1.12642 1.14419 1.19343 0.95176 0.94748 0.96065 1.21161 1.14246 0.94241 1.26917 0.93218 1.25848 0.94638 1.03472 0.94388 1.69999 1.19452 1.37982 1.30424 0.86057 0.78640 0.80378 0.80373 1.18457 1.17505 1.19694 0.91497 0.88130 0.90209 0.88647 0.92473 0.90542 0.95679 0.95523 0.90260 0.90010 0.88506 0.95327 0.87475 0.88425 0.83929 0.84474 0.95443 0.95144 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -5.89 7.66 71.98 0.55 -5.34 16 2 C 0.17 3.83 2.11 46.01 0.10 3.93 16 3 H 0.10 1.92 7.96 -2.39 -0.02 1.90 16 4 C -0.12 -2.59 5.93 31.72 0.19 -2.40 16 5 C 0.04 0.88 5.43 87.48 0.48 1.36 16 6 N -0.52 -8.93 4.39 -939.77 -4.12 -13.06 16 7 C 0.02 0.26 9.11 127.69 1.16 1.42 16 8 C 0.02 0.47 4.98 84.52 0.42 0.89 16 9 C 0.12 2.49 6.23 83.74 0.52 3.02 16 10 N -0.99 -25.24 2.78 -498.02 -1.39 -26.62 16 11 S 2.61 90.11 4.80 -56.49 -0.27 89.84 16 12 O -0.99 -38.76 16.60 -127.65 -2.12 -40.87 16 13 O -0.98 -37.81 14.82 -127.65 -1.89 -39.70 16 14 C -0.60 -22.27 5.72 71.98 0.41 -21.86 16 15 C -0.01 -0.69 4.05 29.85 0.12 -0.57 16 16 C -0.53 -30.14 9.66 25.60 0.25 -29.89 16 17 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16 18 C 0.02 0.89 5.47 84.66 0.46 1.35 16 19 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 20 Si 0.92 44.25 27.47 68.60 1.88 46.14 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 H 0.07 1.64 5.49 -2.39 -0.01 1.63 16 25 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.08 2.39 5.21 -2.39 -0.01 2.38 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.40 7.97 -2.39 -0.02 1.38 16 29 H 0.08 1.24 7.59 -2.39 -0.02 1.22 16 30 H 0.02 0.61 6.61 -2.39 -0.02 0.59 16 31 H 0.03 0.32 8.11 -2.39 -0.02 0.30 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.79 7.93 -2.39 -0.02 0.77 16 34 H 0.10 1.32 7.52 -2.38 -0.02 1.31 16 35 H 0.03 0.66 6.69 -2.39 -0.02 0.64 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 2.06 7.05 -2.39 -0.02 2.04 16 38 H 0.14 4.93 5.30 -2.39 -0.01 4.92 16 39 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 40 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 41 H 0.03 1.45 7.20 -2.39 -0.02 1.44 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -71.90 327.14 -2.01 -73.91 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.94 Total: 16.17 kcal Atomic # 6 Polarization: -52.76 SS G_CDS: 4.66 Total: -48.10 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -5.21 Total: -97.38 kcal Atomic # 8 Polarization: -76.56 SS G_CDS: -4.01 Total: -80.57 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Atomic # 16 Polarization: 90.11 SS G_CDS: -0.27 Total: 89.84 kcal Total: -71.90 -2.01 -73.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354490207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.584 kcal (2) G-P(sol) polarization free energy of solvation -71.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds