Wall clock time and date at job start Fri Apr 10 2020 17:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.05747 * 2 1 4 4 C 1.53801 * 109.11204 * 119.09797 * 2 1 3 5 5 C 1.51336 * 109.62622 * 160.48271 * 4 2 1 6 6 N 1.46199 * 109.10270 * 267.60454 * 5 4 2 7 7 C 1.46906 * 110.99807 * 215.22675 * 6 5 4 8 8 C 1.41440 * 116.34402 * 87.02522 * 6 5 4 9 9 C 1.54768 * 109.98240 * 296.51631 * 8 6 5 10 10 N 1.44881 * 109.68813 * 69.74557 * 9 8 6 11 11 S 1.65598 * 118.75155 * 90.27025 * 10 9 8 12 12 O 1.42102 * 104.27686 * 206.07232 * 11 10 9 13 13 O 1.42094 * 104.27490 * 333.93116 * 11 10 9 14 14 C 1.81393 * 104.44943 * 90.00182 * 11 10 9 15 15 C 1.53003 * 109.47282 * 180.02562 * 14 11 10 16 16 C 1.50702 * 109.47310 * 179.97438 * 15 14 11 17 17 H 1.08002 * 119.99828 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00041 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99951 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46965 * 89.99900 * 20 18 16 22 22 H 1.48499 * 109.47340 * 209.99701 * 20 18 16 23 23 H 1.48501 * 109.47319 * 330.00347 * 20 18 16 24 24 H 1.08992 * 109.47303 * 179.10061 * 1 2 3 25 25 H 1.09009 * 109.46756 * 299.10413 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.09589 * 1 2 3 27 27 H 1.09005 * 109.44525 * 280.55876 * 4 2 1 28 28 H 1.09000 * 109.44655 * 40.46080 * 4 2 1 29 29 H 1.09001 * 109.53382 * 147.71377 * 5 4 2 30 30 H 1.08998 * 109.52771 * 27.49079 * 5 4 2 31 31 H 1.08999 * 109.46692 * 285.01721 * 7 6 5 32 32 H 1.09002 * 109.46991 * 45.01098 * 7 6 5 33 33 H 1.09000 * 109.47202 * 165.01390 * 7 6 5 34 34 H 1.09000 * 109.38315 * 56.67543 * 8 6 5 35 35 H 1.09008 * 109.38406 * 176.46295 * 8 6 5 36 36 H 1.09005 * 109.43569 * 189.80652 * 9 8 6 37 37 H 1.09001 * 109.43953 * 309.71380 * 9 8 6 38 38 H 1.09000 * 109.47188 * 299.99918 * 14 11 10 39 39 H 1.09007 * 109.47527 * 59.99912 * 14 11 10 40 40 H 1.09000 * 109.46928 * 300.00060 * 15 14 11 41 41 H 1.09000 * 109.46887 * 60.00228 * 15 14 11 42 42 H 0.97003 * 119.99816 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8859 1.0302 0.0000 4 6 2.0336 -0.7067 1.2698 5 6 3.4695 -1.1425 1.0735 6 7 3.4883 -2.5127 0.5640 7 6 4.6328 -3.2592 1.1034 8 6 3.4022 -2.6615 -0.8399 9 6 2.0433 -2.1212 -1.3467 10 7 2.0134 -0.6784 -1.2187 11 16 2.5409 0.2450 -2.4881 12 8 2.9682 1.4586 -1.8849 13 8 3.4588 -0.5948 -3.1746 14 6 1.0569 0.5220 -3.4938 15 6 1.4184 1.3733 -4.7127 16 6 0.1857 1.6029 -5.5486 17 1 -0.7611 1.1840 -5.2409 18 6 0.2664 2.3477 -6.7059 19 7 1.4193 2.8583 -7.0803 20 14 -1.2614 2.6318 -7.7424 21 1 -1.9445 3.8697 -7.2882 22 1 -0.8726 2.7758 -9.1683 23 1 -2.1819 1.4759 -7.5945 24 1 -0.3633 -1.0275 -0.0161 25 1 -0.3633 0.4999 0.8980 26 1 -0.3633 0.5278 -0.8818 27 1 1.9745 -0.0205 2.1147 28 1 1.4135 -1.5808 1.4688 29 1 3.9966 -1.1008 2.0267 30 1 3.9565 -0.4806 0.3574 31 1 5.5459 -2.9348 0.6043 32 1 4.7173 -3.0713 2.1737 33 1 4.4843 -4.3254 0.9323 34 1 4.2117 -2.1057 -1.3129 35 1 3.4891 -3.7171 -1.0978 36 1 1.9116 -2.3952 -2.3935 37 1 1.2371 -2.5541 -0.7544 38 1 0.6588 -0.4368 -3.8259 39 1 0.3057 1.0406 -2.8979 40 1 1.8168 2.3321 -4.3810 41 1 2.1694 0.8543 -5.3084 42 1 1.4762 3.3820 -7.8948 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354490214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:08 Heat of formation + Delta-G solvation = -69.551695 kcal Electronic energy + Delta-G solvation = -22824.590498 eV Core-core repulsion = 19545.748068 eV Total energy + Delta-G solvation = -3278.842430 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.40113 -36.74160 -35.86084 -35.39935 -33.89193 -33.02967 -31.16596 -29.41814 -28.44485 -25.60613 -24.94447 -24.10262 -21.75186 -20.97640 -20.36392 -18.26852 -17.61328 -16.60201 -16.49546 -15.70355 -15.42419 -15.21437 -15.02940 -14.55918 -14.35248 -13.74264 -13.48193 -13.36502 -13.10688 -12.59736 -12.50531 -12.19863 -12.03428 -11.93656 -11.80053 -11.71385 -11.64918 -11.55086 -11.27340 -11.07699 -10.96196 -10.92980 -10.80780 -10.45184 -10.39053 -10.34606 -9.74417 -9.30404 -8.74912 -8.50495 -8.24467 -6.12535 -4.18168 0.78288 3.03189 3.25905 3.32116 3.34946 3.85764 4.29393 4.38814 4.56173 4.60438 4.88087 4.94213 5.02404 5.09753 5.22139 5.22636 5.34493 5.40628 5.50158 5.50565 5.54483 5.58479 5.65205 5.71108 5.73527 5.78337 5.84259 5.89986 6.01829 6.15484 6.19536 6.37683 6.51276 6.82533 7.06443 7.29686 7.32265 7.35766 7.80437 8.17501 8.85236 9.46625 10.98524 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.004248 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.814545 B = 6590.515236 C = 6871.490550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.137 3.863 3 H 0.102 0.898 4 C -0.116 4.116 5 C 0.070 3.930 6 N -0.566 5.566 7 C 0.033 3.967 8 C 0.052 3.948 9 C 0.130 3.870 10 N -0.997 5.997 11 S 2.582 3.418 12 O -0.967 6.967 13 O -0.964 6.964 14 C -0.589 4.589 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 -10.732 17.547 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.120 0.880 4 C -0.156 4.156 5 C -0.057 4.057 6 N -0.291 5.291 7 C -0.115 4.115 8 C -0.078 4.078 9 C 0.003 3.997 10 N -0.832 5.832 11 S 2.681 3.319 12 O -0.957 6.957 13 O -0.954 6.954 14 C -0.722 4.722 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.413 -10.546 17.470 20.455 hybrid contribution -0.780 0.412 -1.075 1.391 sum 0.633 -10.134 16.394 19.284 Atomic orbital electron populations 1.22288 0.95317 1.02559 1.02499 1.21369 0.93965 0.97113 0.84386 0.88001 1.21813 0.96682 1.00801 0.96272 1.21548 0.97025 0.87932 0.99200 1.58368 1.43668 1.15023 1.12002 1.22338 0.91106 0.98504 0.99556 1.21783 0.98099 1.01184 0.86771 1.21254 0.97412 0.79639 1.01375 1.57579 1.81540 1.15162 1.28955 1.05917 0.78050 0.73641 0.74263 1.93512 1.80744 1.46325 1.75154 1.93534 1.60242 1.67133 1.74515 1.30510 1.18229 1.10248 1.13254 1.18957 0.98960 0.93957 0.89193 1.21002 0.94293 1.33426 1.07188 0.92046 1.25071 0.96401 0.95437 0.97581 1.69961 1.24234 1.34468 1.24224 0.86468 0.82698 0.78672 0.79441 1.20454 1.20993 1.19743 0.92014 0.91520 0.92091 0.90667 0.90106 0.91286 0.93866 0.95793 0.91729 0.91637 0.94313 0.90075 0.89879 0.89734 0.86318 0.86301 0.94970 0.94942 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.36 37.16 0.35 -1.36 16 2 C 0.14 1.64 2.76 -66.90 -0.18 1.46 16 3 H 0.10 1.36 6.61 -51.93 -0.34 1.02 16 4 C -0.12 -1.16 5.16 -27.15 -0.14 -1.30 16 5 C 0.07 0.79 5.32 -5.04 -0.03 0.76 16 6 N -0.57 -6.28 4.09 -247.77 -1.01 -7.29 16 7 C 0.03 0.30 9.50 60.07 0.57 0.87 16 8 C 0.05 0.64 5.30 -5.75 -0.03 0.61 16 9 C 0.13 1.57 5.28 -3.98 -0.02 1.55 16 10 N -1.00 -13.82 2.01 -106.22 -0.21 -14.03 16 11 S 2.58 47.62 5.30 -107.50 -0.57 47.05 16 12 O -0.97 -20.27 16.38 -57.54 -0.94 -21.22 16 13 O -0.96 -20.07 16.11 -57.54 -0.93 -20.99 16 14 C -0.59 -11.48 6.12 37.16 0.23 -11.26 16 15 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 16 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 20 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H 0.06 0.58 7.88 -51.93 -0.41 0.17 16 25 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.06 0.68 7.33 -51.93 -0.38 0.30 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.78 7.83 -51.93 -0.41 0.37 16 29 H 0.07 0.65 7.40 -51.93 -0.38 0.27 16 30 H 0.04 0.60 7.32 -51.93 -0.38 0.22 16 31 H 0.02 0.23 8.13 -51.93 -0.42 -0.19 16 32 H 0.06 0.50 7.63 -51.93 -0.40 0.11 16 33 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.04 0.58 7.32 -51.93 -0.38 0.20 16 35 H 0.08 0.85 7.98 -51.92 -0.41 0.44 16 36 H 0.08 0.99 7.65 -51.93 -0.40 0.59 16 37 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 38 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 39 H 0.12 2.09 7.33 -51.92 -0.38 1.71 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -33.72 339.54 -9.82 -43.54 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.18 Total: -1.21 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 0.19 Total: -21.30 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.49 Total: -47.22 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.87 Total: -42.21 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 47.62 SS G_CDS: -0.57 Total: 47.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.72 -9.82 -43.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354490214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.013 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds