Wall clock time and date at job start Fri Apr 10 2020 17:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30277 * 119.38675 * 2 1 4 4 C 1.35647 * 121.26712 * 180.02562 * 3 2 1 5 5 N 1.30748 * 120.01318 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99792 * 359.97438 * 5 4 3 7 7 C 1.52997 * 109.46827 * 120.00433 * 6 5 4 8 8 C 1.52999 * 109.46824 * 179.97438 * 7 6 5 9 9 C 1.47199 * 109.47337 * 179.97438 * 8 7 6 10 10 N 8.08341 * 104.03139 * 25.52816 * 2 1 3 11 11 N 1.38381 * 119.97616 * 0.27722 * 4 3 2 12 12 H 0.96994 * 120.58661 * 179.70371 * 11 4 3 13 13 C 1.38075 * 118.82049 * 359.45691 * 11 4 3 14 14 N 1.30234 * 120.60170 * 180.24227 * 13 11 4 15 15 C 1.46498 * 119.99485 * 354.15456 * 14 13 11 16 16 C 1.53004 * 109.47111 * 114.40655 * 15 14 13 17 17 C 1.50693 * 109.47088 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00417 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99948 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99966 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00107 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47108 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47203 * 119.99883 * 21 19 17 24 24 H 1.48505 * 109.46689 * 240.00398 * 21 19 17 25 25 N 1.36214 * 119.38645 * 180.02562 * 2 1 3 26 26 H 0.97001 * 120.04765 * 359.95431 * 25 2 1 27 27 H 1.09004 * 109.47112 * 89.99487 * 1 2 3 28 28 H 1.08992 * 109.47198 * 210.00082 * 1 2 3 29 29 H 1.09008 * 109.47122 * 329.99985 * 1 2 3 30 30 H 1.09004 * 109.46742 * 240.00422 * 6 5 4 31 31 H 1.08999 * 109.47242 * 0.02562 * 6 5 4 32 32 H 1.08997 * 109.47076 * 299.99584 * 7 6 5 33 33 H 1.08999 * 109.47424 * 59.99849 * 7 6 5 34 34 H 1.08997 * 109.47602 * 300.00035 * 8 7 6 35 35 H 1.09006 * 109.47395 * 59.99815 * 8 7 6 36 36 H 1.09008 * 109.47026 * 234.40082 * 15 14 13 37 37 H 1.08995 * 109.47821 * 354.40057 * 15 14 13 38 38 H 1.09000 * 109.46434 * 299.99602 * 16 15 14 39 39 H 1.08995 * 109.47266 * 59.99062 * 16 15 14 40 40 H 0.97001 * 119.99978 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1463 1.1351 0.0000 4 6 3.5020 1.1796 -0.0005 5 7 4.1185 2.3327 0.0000 6 6 3.3450 3.5768 0.0006 7 6 3.6884 4.3901 1.2501 8 6 2.8811 5.6898 1.2504 9 6 3.2109 6.4721 2.4529 10 7 3.4669 7.0766 3.3796 11 7 4.2324 0.0043 -0.0069 12 1 5.2021 0.0258 -0.0116 13 6 3.5562 -1.1996 -0.0011 14 7 4.2089 -2.3265 -0.0020 15 6 5.6675 -2.3280 -0.1384 16 6 6.2999 -2.8541 1.1517 17 6 7.8002 -2.8562 1.0112 18 1 8.2572 -2.5159 0.0937 19 6 8.5897 -3.2915 2.0544 20 7 8.0333 -3.7054 3.1719 21 14 10.4497 -3.2934 1.8805 22 1 10.8216 -2.7850 0.5358 23 1 11.0452 -2.4195 2.9228 24 1 10.9606 -4.6782 2.0443 25 7 2.1754 -1.1869 -0.0005 26 1 1.6821 -2.0221 -0.0002 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 3.5896 4.1570 -0.8892 31 1 2.2805 3.3428 0.0009 32 1 3.4439 3.8099 2.1398 33 1 4.7530 4.6241 1.2502 34 1 3.1259 6.2699 0.3607 35 1 1.8163 5.4562 1.2501 36 1 5.9539 -2.9701 -0.9715 37 1 6.0160 -1.3125 -0.3261 38 1 6.0135 -2.2120 1.9846 39 1 5.9514 -3.8696 1.3393 40 1 8.5888 -4.0120 3.9056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359712665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:23 Heat of formation + Delta-G solvation = 98.596736 kcal Electronic energy + Delta-G solvation = -21721.033050 eV Core-core repulsion = 18378.623634 eV Total energy + Delta-G solvation = -3342.409416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14838 -37.41941 -36.70826 -36.49981 -34.49259 -33.62592 -32.09080 -31.76836 -29.96797 -29.22095 -27.02641 -25.05853 -22.82784 -22.46490 -21.20030 -20.18983 -19.48866 -18.81394 -17.75238 -16.59900 -16.22316 -15.97418 -15.85289 -15.55088 -14.74898 -14.51226 -14.25769 -13.90229 -13.73066 -13.50648 -13.31337 -13.00907 -12.98071 -12.67842 -12.29980 -11.97659 -11.76029 -11.68236 -11.58483 -11.31617 -11.03098 -10.92963 -10.74864 -10.64703 -10.33773 -9.80400 -9.36264 -9.19802 -9.03302 -8.40438 -8.18431 -7.91631 -6.04991 -4.09077 0.98060 2.26364 2.32646 2.57804 2.61614 2.93759 3.29546 3.37051 3.40871 3.58038 3.69483 3.82456 4.41788 4.59934 4.69458 4.80998 4.95050 5.01093 5.12547 5.14772 5.26238 5.31200 5.44360 5.47410 5.49051 5.73802 5.87693 6.02294 6.16760 6.22600 6.36596 6.50692 6.73774 6.81540 7.06620 7.38794 7.60327 7.68469 7.87975 7.94965 8.11973 8.30620 8.45151 8.97765 9.55698 11.06127 Molecular weight = 290.16amu Principal moments of inertia in cm(-1) A = 0.011153 B = 0.003545 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.920798 B = 7895.943773 C = 9854.960905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.445 3.555 3 N -0.586 5.586 4 C 0.545 3.455 5 N -0.585 5.585 6 C 0.072 3.928 7 C -0.110 4.110 8 C -0.023 4.023 9 C 0.209 3.791 10 N -0.445 5.445 11 N -0.681 5.681 12 H 0.435 0.565 13 C 0.562 3.438 14 N -0.579 5.579 15 C 0.072 3.928 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 N -0.641 5.641 26 H 0.432 0.568 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.027 0.973 38 H 0.013 0.987 39 H 0.027 0.973 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.683 10.732 -9.456 24.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.169 3.831 3 N -0.321 5.321 4 C 0.177 3.823 5 N -0.315 5.315 6 C -0.059 4.059 7 C -0.149 4.149 8 C -0.064 4.064 9 C -0.109 4.109 10 N -0.122 5.122 11 N -0.330 5.330 12 H 0.279 0.721 13 C 0.196 3.804 14 N -0.310 5.310 15 C -0.057 4.057 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 N -0.276 5.276 26 H 0.272 0.728 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.031 0.969 39 H 0.045 0.955 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.601 12.006 -7.851 23.490 hybrid contribution 1.287 -0.687 -0.272 1.484 sum -17.314 11.319 -8.123 22.224 Atomic orbital electron populations 1.20972 0.84718 1.05728 1.05241 1.23236 0.95925 0.80907 0.83075 1.69574 1.07312 1.23665 1.31580 1.20207 0.83237 0.87902 0.90987 1.72548 1.34078 0.96178 1.28672 1.21628 0.97869 0.89859 0.96562 1.21510 1.00663 0.93347 0.99399 1.19292 1.02712 0.94580 0.89819 1.29291 0.93245 0.93581 0.94745 1.81220 1.08955 1.10337 1.11641 1.43593 1.11636 1.02194 1.75556 0.72098 1.19046 0.83422 0.83024 0.94948 1.72337 1.13056 1.19231 1.26346 1.22175 0.82027 0.98984 1.02487 1.19108 0.94560 0.97128 0.89912 1.21181 0.91185 1.43613 1.00434 0.92443 1.25010 0.98906 0.95119 0.95224 1.69984 1.35336 1.43276 1.04450 0.86498 0.85400 0.77695 0.78200 1.19629 1.20949 1.20929 1.42416 1.03420 1.10145 1.71668 0.72775 0.88095 0.89168 0.87698 0.91015 0.91425 0.91441 0.90631 0.87286 0.87317 0.90358 0.95517 0.96856 0.95502 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.35 10.26 36.01 0.37 0.01 16 2 C 0.44 3.93 7.77 -154.52 -1.20 2.73 16 3 N -0.59 -6.88 8.63 -10.77 -0.09 -6.97 16 4 C 0.55 8.07 8.47 -320.86 -2.72 5.35 16 5 N -0.58 -8.68 10.65 -61.93 -0.66 -9.34 16 6 C 0.07 0.76 6.33 -4.04 -0.03 0.74 16 7 C -0.11 -1.03 5.49 -26.73 -0.15 -1.17 16 8 C -0.02 -0.14 5.70 -29.52 -0.17 -0.31 16 9 C 0.21 2.08 15.43 -20.77 -0.32 1.76 16 10 N -0.44 -5.98 18.54 42.14 0.78 -5.20 16 11 N -0.68 -10.88 5.40 -13.90 -0.08 -10.96 16 12 H 0.43 7.49 6.37 -40.82 -0.26 7.23 16 13 C 0.56 8.66 8.54 -318.51 -2.72 5.94 16 14 N -0.58 -10.62 10.62 -61.47 -0.65 -11.28 16 15 C 0.07 1.51 6.21 -4.04 -0.03 1.48 16 16 C 0.03 0.80 5.30 -27.88 -0.15 0.65 16 17 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 N -0.64 -6.67 5.42 -10.43 -0.06 -6.73 16 26 H 0.43 3.25 8.82 -40.82 -0.36 2.89 16 27 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.10 0.31 8.14 -51.92 -0.42 -0.12 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.67 6.64 -51.93 -0.35 0.32 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.03 0.53 5.54 -51.93 -0.29 0.24 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 350.46 15.07 5.28 5.28 Total: -1.00 -36.49 350.46 -12.72 -49.21 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.44 Total: 1.83 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -7.51 Total: 3.70 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -0.02 Total: -76.69 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.49 -12.72 -49.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359712665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.809 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds