Wall clock time and date at job start Fri Apr 10 2020 17:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.45109 * 2 1 4 4 C 1.53036 * 109.46151 * 240.02859 * 2 1 3 5 5 C 1.53121 * 109.28130 * 180.79961 * 4 2 1 6 6 H 1.08998 * 109.52408 * 177.61684 * 5 4 2 7 7 N 1.46495 * 109.52502 * 297.75572 * 5 4 2 8 8 S 1.65601 * 119.99861 * 214.99662 * 7 5 4 9 9 O 1.42096 * 104.27550 * 308.92761 * 8 7 5 10 10 O 1.42097 * 104.27967 * 181.06604 * 8 7 5 11 11 C 1.81409 * 104.44942 * 64.99646 * 8 7 5 12 12 C 1.52999 * 109.46814 * 180.02562 * 11 8 7 13 13 C 1.50706 * 109.46573 * 179.97438 * 12 11 8 14 14 H 1.07995 * 120.00167 * 359.72054 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47487 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47233 * 120.00158 * 17 15 13 20 20 H 1.48508 * 109.46883 * 239.99963 * 17 15 13 21 21 C 1.53125 * 109.15652 * 57.65599 * 5 4 2 22 22 C 1.53040 * 109.27480 * 302.34769 * 21 5 4 23 23 N 1.46841 * 109.52835 * 59.18173 * 22 21 5 24 24 C 1.46902 * 111.00316 * 174.15824 * 23 22 21 25 25 H 1.09000 * 109.46820 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46770 * 299.97431 * 1 2 3 27 27 H 1.09004 * 109.47314 * 59.97183 * 1 2 3 28 28 H 1.09000 * 109.50447 * 60.86316 * 4 2 1 29 29 H 1.09002 * 109.50663 * 300.74516 * 4 2 1 30 30 H 0.97004 * 120.00070 * 34.98792 * 7 5 4 31 31 H 1.09000 * 109.47067 * 60.00006 * 11 8 7 32 32 H 1.09001 * 109.46593 * 300.00012 * 11 8 7 33 33 H 1.09000 * 109.47486 * 60.00033 * 12 11 8 34 34 H 1.09001 * 109.47362 * 299.99310 * 12 11 8 35 35 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.50309 * 62.28448 * 21 5 4 37 37 H 1.08994 * 109.50425 * 182.40488 * 21 5 4 38 38 H 1.08997 * 109.46195 * 299.15958 * 22 21 5 39 39 H 1.09006 * 109.44883 * 179.19307 * 22 21 5 40 40 H 1.09001 * 109.47346 * 184.20484 * 24 23 22 41 41 H 1.08994 * 109.47050 * 304.20743 * 24 23 22 42 42 H 1.09003 * 109.46838 * 64.21331 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5709 -0.7359 -1.2358 6 1 3.9379 -1.2853 -2.1027 7 7 4.0745 0.6391 -1.2781 8 16 5.4697 0.9849 -2.1005 9 8 6.4114 0.0436 -1.6043 10 8 5.6555 2.3800 -1.9046 11 6 5.0717 0.6332 -3.8351 12 6 6.2966 0.9168 -4.7069 13 6 5.9661 0.6240 -6.1479 14 1 4.9825 0.2667 -6.4144 15 6 6.9213 0.8074 -7.1251 16 7 8.1209 1.2373 -6.7998 17 14 6.5115 0.4452 -8.9112 18 1 5.1059 -0.0231 -9.0115 19 1 6.6811 1.6802 -9.7183 20 1 7.4221 -0.6101 -9.4238 21 6 4.0548 -1.4187 0.0466 22 6 3.4865 -0.6776 1.2589 23 7 2.0193 -0.6917 1.1993 24 6 1.4373 -0.1106 2.4165 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8903 27 1 -0.3634 0.5143 -0.8897 28 1 1.6894 -0.1981 -2.1399 29 1 1.6659 -1.7447 -1.2577 30 1 3.5907 1.3470 -0.8246 31 1 4.2440 1.2668 -4.1536 32 1 4.7879 -0.4142 -3.9375 33 1 7.1241 0.2829 -4.3883 34 1 6.5808 1.9641 -4.6046 35 1 8.7929 1.3660 -7.4873 36 1 3.7125 -2.4535 0.0593 37 1 5.1439 -1.3946 0.0830 38 1 3.8403 0.3533 1.2531 39 1 3.8176 -1.1700 2.1733 40 1 0.3517 -0.2011 2.3793 41 1 1.8165 -0.6414 3.2897 42 1 1.7119 0.9422 2.4837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360654733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:31 Heat of formation + Delta-G solvation = -83.838175 kcal Electronic energy + Delta-G solvation = -22268.694359 eV Core-core repulsion = 18989.232422 eV Total energy + Delta-G solvation = -3279.461938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.80733 -36.58824 -35.52780 -35.31794 -33.89959 -32.60011 -31.16987 -30.90982 -27.37661 -26.36344 -25.60679 -23.10745 -21.77198 -21.53659 -19.92649 -18.58944 -17.52163 -16.63729 -16.00684 -15.96302 -15.55022 -15.41704 -14.92484 -14.57085 -14.54150 -14.27983 -13.63993 -13.41735 -12.86098 -12.72039 -12.52847 -12.27711 -12.09723 -11.97123 -11.81121 -11.75521 -11.57615 -11.49131 -11.22049 -11.16747 -11.10092 -10.96190 -10.91634 -10.44709 -10.38429 -10.25993 -9.79409 -9.47002 -9.02407 -8.51365 -8.49133 -6.13183 -4.18713 0.80608 3.14987 3.24815 3.32131 3.35469 3.69300 4.23872 4.37233 4.49201 4.57299 4.74594 4.75740 4.95590 5.02431 5.05588 5.21636 5.22175 5.27437 5.36860 5.41646 5.49102 5.49886 5.61950 5.64320 5.67067 5.72073 5.79290 5.86077 5.90099 6.05034 6.15088 6.26973 6.48456 6.87670 6.92107 7.09168 7.29629 7.35656 7.80023 8.16835 8.84993 9.46178 10.97903 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.027555 B = 0.003862 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.910486 B = 7247.690271 C = 7744.121851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 H 0.041 0.959 4 C -0.118 4.118 5 C 0.151 3.849 6 H 0.090 0.910 7 N -1.123 6.123 8 S 2.591 3.409 9 O -0.965 6.965 10 O -0.970 6.970 11 C -0.590 4.590 12 C 0.027 3.973 13 C -0.520 4.520 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.135 4.135 22 C 0.057 3.943 23 N -0.538 5.538 24 C 0.021 3.979 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.408 0.592 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.120 -4.270 15.315 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 H 0.059 0.941 4 C -0.157 4.157 5 C 0.044 3.956 6 H 0.108 0.892 7 N -0.880 5.880 8 S 2.689 3.311 9 O -0.954 6.954 10 O -0.961 6.961 11 C -0.723 4.723 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.174 4.174 22 C -0.071 4.071 23 N -0.263 5.263 24 C -0.127 4.127 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.242 0.758 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.191 -4.545 15.563 21.546 hybrid contribution -0.550 0.818 -1.180 1.537 sum -14.741 -3.728 14.383 20.930 Atomic orbital electron populations 1.21923 0.94227 1.02624 1.01787 1.21611 0.95361 0.95543 0.90425 0.94072 1.21950 0.94260 1.02333 0.97174 1.20781 0.94419 0.81715 0.98714 0.89249 1.55980 1.47077 1.15075 1.69885 1.05600 0.73354 0.74085 0.78098 1.93539 1.59461 1.64143 1.78295 1.93547 1.84402 1.32236 1.85888 1.30450 1.11272 1.10466 1.20112 1.18967 0.88943 0.98395 0.94855 1.21042 0.98709 1.45525 0.90629 0.91990 1.25075 0.94945 0.94953 0.99558 1.69965 1.03726 1.45369 1.33777 0.86415 0.78503 0.78070 0.84300 1.19641 1.20805 1.20791 1.22118 1.01932 0.99740 0.93635 1.22049 0.86561 0.99453 0.99005 1.61987 1.07540 1.54846 1.01974 1.22419 1.00589 0.97236 0.92491 0.91670 0.92528 0.92022 0.90429 0.89689 0.75812 0.86145 0.86371 0.94817 0.94887 0.92582 0.90197 0.89479 0.94579 0.90753 0.91013 0.91554 0.95820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.77 37.16 0.33 -0.78 16 2 C 0.08 0.72 2.27 -67.72 -0.15 0.56 16 3 H 0.04 0.40 6.62 -51.93 -0.34 0.05 16 4 C -0.12 -1.09 5.07 -26.65 -0.14 -1.22 16 5 C 0.15 1.70 2.91 -67.81 -0.20 1.50 16 6 H 0.09 0.97 7.16 -51.93 -0.37 0.60 16 7 N -1.12 -14.36 4.72 -4.79 -0.02 -14.39 16 8 S 2.59 45.57 5.38 -107.50 -0.58 45.00 16 9 O -0.96 -19.46 17.12 -57.54 -0.99 -20.45 16 10 O -0.97 -20.17 18.08 -57.54 -1.04 -21.21 16 11 C -0.59 -11.07 5.90 37.16 0.22 -10.85 16 12 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 13 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.13 -1.51 5.79 -26.65 -0.15 -1.66 16 22 C 0.06 0.59 5.32 -3.84 -0.02 0.57 16 23 N -0.54 -5.10 4.75 -234.93 -1.12 -6.22 16 24 C 0.02 0.17 9.05 60.07 0.54 0.71 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.39 6.32 -51.93 -0.33 0.06 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.41 4.66 6.94 -34.47 -0.24 4.42 16 31 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 32 H 0.12 1.96 7.45 -51.92 -0.39 1.57 16 33 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.13 7.44 -51.93 -0.39 0.74 16 38 H 0.04 0.41 7.54 -51.93 -0.39 0.01 16 39 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.07 0.50 6.21 -51.93 -0.32 0.18 16 41 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 42 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -34.04 340.00 -9.98 -44.02 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.96 Total: 1.45 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -0.12 Total: -23.71 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.40 Total: -46.33 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -2.03 Total: -41.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 45.57 SS G_CDS: -0.58 Total: 45.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.04 -9.98 -44.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360654733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.821 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds