Wall clock time and date at job start Fri Apr 10 2020 17:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.45109 * 2 1 4 4 C 1.53036 * 109.46151 * 240.02859 * 2 1 3 5 5 C 1.53121 * 109.28130 * 180.79961 * 4 2 1 6 6 H 1.08998 * 109.52408 * 177.61684 * 5 4 2 7 7 N 1.46495 * 109.52502 * 297.75572 * 5 4 2 8 8 S 1.65601 * 119.99861 * 214.99662 * 7 5 4 9 9 O 1.42096 * 104.27550 * 308.92761 * 8 7 5 10 10 O 1.42097 * 104.27967 * 181.06604 * 8 7 5 11 11 C 1.81409 * 104.44942 * 64.99646 * 8 7 5 12 12 C 1.52999 * 109.46814 * 180.02562 * 11 8 7 13 13 C 1.50706 * 109.46573 * 179.97438 * 12 11 8 14 14 H 1.07995 * 120.00167 * 359.72054 * 13 12 11 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47487 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47233 * 120.00158 * 17 15 13 20 20 H 1.48508 * 109.46883 * 239.99963 * 17 15 13 21 21 C 1.53125 * 109.15652 * 57.65599 * 5 4 2 22 22 C 1.53040 * 109.27480 * 302.34769 * 21 5 4 23 23 N 1.46841 * 109.52835 * 59.18173 * 22 21 5 24 24 C 1.46902 * 111.00316 * 174.15824 * 23 22 21 25 25 H 1.09000 * 109.46820 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46770 * 299.97431 * 1 2 3 27 27 H 1.09004 * 109.47314 * 59.97183 * 1 2 3 28 28 H 1.09000 * 109.50447 * 60.86316 * 4 2 1 29 29 H 1.09002 * 109.50663 * 300.74516 * 4 2 1 30 30 H 0.97004 * 120.00070 * 34.98792 * 7 5 4 31 31 H 1.09000 * 109.47067 * 60.00006 * 11 8 7 32 32 H 1.09001 * 109.46593 * 300.00012 * 11 8 7 33 33 H 1.09000 * 109.47486 * 60.00033 * 12 11 8 34 34 H 1.09001 * 109.47362 * 299.99310 * 12 11 8 35 35 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.50309 * 62.28448 * 21 5 4 37 37 H 1.08994 * 109.50425 * 182.40488 * 21 5 4 38 38 H 1.08997 * 109.46195 * 299.15958 * 22 21 5 39 39 H 1.09006 * 109.44883 * 179.19307 * 22 21 5 40 40 H 1.09001 * 109.47346 * 184.20484 * 24 23 22 41 41 H 1.08994 * 109.47050 * 304.20743 * 24 23 22 42 42 H 1.09003 * 109.46838 * 64.21331 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5709 -0.7359 -1.2358 6 1 3.9379 -1.2853 -2.1027 7 7 4.0745 0.6391 -1.2781 8 16 5.4697 0.9849 -2.1005 9 8 6.4114 0.0436 -1.6043 10 8 5.6555 2.3800 -1.9046 11 6 5.0717 0.6332 -3.8351 12 6 6.2966 0.9168 -4.7069 13 6 5.9661 0.6240 -6.1479 14 1 4.9825 0.2667 -6.4144 15 6 6.9213 0.8074 -7.1251 16 7 8.1209 1.2373 -6.7998 17 14 6.5115 0.4452 -8.9112 18 1 5.1059 -0.0231 -9.0115 19 1 6.6811 1.6802 -9.7183 20 1 7.4221 -0.6101 -9.4238 21 6 4.0548 -1.4187 0.0466 22 6 3.4865 -0.6776 1.2589 23 7 2.0193 -0.6917 1.1993 24 6 1.4373 -0.1106 2.4165 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8903 27 1 -0.3634 0.5143 -0.8897 28 1 1.6894 -0.1981 -2.1399 29 1 1.6659 -1.7447 -1.2577 30 1 3.5907 1.3470 -0.8246 31 1 4.2440 1.2668 -4.1536 32 1 4.7879 -0.4142 -3.9375 33 1 7.1241 0.2829 -4.3883 34 1 6.5808 1.9641 -4.6046 35 1 8.7929 1.3660 -7.4873 36 1 3.7125 -2.4535 0.0593 37 1 5.1439 -1.3946 0.0830 38 1 3.8403 0.3533 1.2531 39 1 3.8176 -1.1700 2.1733 40 1 0.3517 -0.2011 2.3793 41 1 1.8165 -0.6414 3.2897 42 1 1.7119 0.9422 2.4837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360654733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:29 Heat of formation + Delta-G solvation = -110.117645 kcal Electronic energy + Delta-G solvation = -22269.833923 eV Core-core repulsion = 18989.232422 eV Total energy + Delta-G solvation = -3280.601501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.59935 -38.14297 -37.00457 -36.32600 -35.89140 -33.31773 -33.11742 -31.86942 -28.09412 -27.58826 -27.06767 -23.88066 -23.61704 -22.38510 -20.96984 -19.80517 -19.07319 -18.35901 -17.23682 -17.03560 -16.68262 -16.52168 -16.33217 -16.18461 -15.42371 -15.14333 -15.00492 -14.53187 -14.47060 -13.75872 -13.64560 -13.49829 -13.21252 -13.10286 -12.94849 -12.92968 -12.88012 -12.77015 -12.69226 -12.60656 -12.25244 -12.16944 -12.11070 -11.92751 -11.79143 -11.64866 -11.15200 -11.04818 -10.65270 -10.34195 -9.22671 -8.25762 -6.39696 -0.66539 1.41750 1.42188 1.55581 1.85851 2.38489 2.81339 2.98430 3.07946 3.29095 3.70610 3.82219 3.95814 4.02363 4.10278 4.17970 4.25738 4.36692 4.51773 4.58485 4.62667 4.65274 4.75491 4.81230 4.84422 4.95363 4.98032 5.04518 5.12076 5.24534 5.27281 5.28698 5.28773 5.35760 5.45442 5.69074 6.06010 6.07927 6.16426 6.21283 6.74487 7.30666 8.86770 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.027555 B = 0.003862 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.910486 B = 7247.690271 C = 7744.121851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.035 0.965 4 C -0.113 4.113 5 C 0.140 3.860 6 H 0.095 0.905 7 N -1.103 6.103 8 S 2.618 3.382 9 O -0.992 6.992 10 O -1.004 7.004 11 C -0.587 4.587 12 C 0.019 3.981 13 C -0.537 4.537 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.935 5.935 17 Si 0.974 3.026 18 H -0.254 1.254 19 H -0.279 1.279 20 H -0.278 1.278 21 C -0.135 4.135 22 C 0.057 3.943 23 N -0.540 5.540 24 C 0.019 3.981 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.418 0.582 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.007 0.993 34 H 0.004 0.996 35 H 0.267 0.733 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.023 0.977 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.842 -5.269 15.023 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 H 0.052 0.948 4 C -0.152 4.152 5 C 0.034 3.966 6 H 0.113 0.887 7 N -0.864 5.864 8 S 2.714 3.286 9 O -0.982 6.982 10 O -0.995 6.995 11 C -0.719 4.719 12 C -0.020 4.020 13 C -0.576 4.576 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.575 5.575 17 Si 0.798 3.202 18 H -0.178 1.178 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.175 4.175 22 C -0.071 4.071 23 N -0.266 5.266 24 C -0.128 4.128 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.254 0.746 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.025 0.975 34 H 0.022 0.978 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -16.932 -5.542 15.278 23.470 hybrid contribution 0.269 1.107 -0.986 1.507 sum -16.663 -4.435 14.292 22.396 Atomic orbital electron populations 1.21884 0.92783 1.02939 1.02454 1.21710 0.96525 0.95064 0.90212 0.94756 1.21956 0.92156 1.03313 0.97767 1.21099 0.96154 0.80321 0.99069 0.88680 1.55495 1.45791 1.16420 1.68708 1.04546 0.73773 0.72707 0.77556 1.93504 1.61374 1.64726 1.78596 1.93494 1.85436 1.34309 1.86236 1.30329 1.08897 1.12693 1.19950 1.18830 0.91120 0.96094 0.95930 1.21555 0.99353 1.44984 0.91685 0.90458 1.26132 0.94720 0.94675 1.04821 1.70112 1.05052 1.46819 1.35499 0.85255 0.79068 0.77883 0.77982 1.17777 1.20490 1.20412 1.22096 1.00604 1.00743 0.94022 1.22018 0.87466 0.98640 0.98954 1.62018 1.06672 1.55150 1.02733 1.22480 1.01283 0.97010 0.92065 0.91473 0.92003 0.91305 0.89327 0.88482 0.74581 0.83908 0.83802 0.97469 0.97753 0.92432 0.88769 0.91716 0.95849 0.90123 0.89781 0.91033 0.96152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.77 71.98 0.63 -1.10 16 2 C 0.07 1.15 2.27 44.94 0.10 1.25 16 3 H 0.03 0.59 6.62 -2.38 -0.02 0.57 16 4 C -0.11 -1.75 5.07 30.65 0.16 -1.60 16 5 C 0.14 2.88 2.91 45.07 0.13 3.01 16 6 H 0.10 1.86 7.16 -2.39 -0.02 1.85 16 7 N -1.10 -26.89 4.72 -169.05 -0.80 -27.69 16 8 S 2.62 92.15 5.38 -56.49 -0.30 91.85 16 9 O -0.99 -40.69 17.12 -127.65 -2.19 -42.88 16 10 O -1.00 -42.33 18.08 -127.65 -2.31 -44.64 16 11 C -0.59 -21.58 5.90 71.98 0.42 -21.15 16 12 C 0.02 1.00 4.98 29.85 0.15 1.14 16 13 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 14 H 0.08 3.90 7.74 -2.91 -0.02 3.87 16 15 C -0.01 -0.30 5.46 84.66 0.46 0.17 16 16 N -0.94 -56.91 13.29 21.45 0.28 -56.62 16 17 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 18 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 21 C -0.14 -2.86 5.79 30.65 0.18 -2.68 16 22 C 0.06 1.12 5.32 86.33 0.46 1.58 16 23 N -0.54 -9.11 4.75 -897.18 -4.26 -13.36 16 24 C 0.02 0.27 9.05 127.69 1.16 1.43 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.68 6.32 -2.38 -0.02 0.67 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.42 8.97 6.94 -96.74 -0.67 8.30 16 31 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 32 H 0.14 4.50 7.45 -2.39 -0.02 4.48 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.67 7.44 -2.39 -0.02 1.65 16 38 H 0.02 0.51 7.54 -2.39 -0.02 0.49 16 39 H 0.08 1.45 8.09 -2.38 -0.02 1.43 16 40 H 0.08 0.96 6.21 -2.39 -0.01 0.94 16 41 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 42 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -74.14 340.00 -3.14 -77.28 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.33 Total: 18.24 kcal Atomic # 6 Polarization: -51.29 SS G_CDS: 4.08 Total: -47.20 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -4.77 Total: -97.67 kcal Atomic # 8 Polarization: -83.03 SS G_CDS: -4.49 Total: -87.52 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 92.15 SS G_CDS: -0.30 Total: 91.85 kcal Total: -74.14 -3.14 -77.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360654733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.841 kcal (2) G-P(sol) polarization free energy of solvation -74.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds