Wall clock time and date at job start Fri Apr 10 2020 17:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99963 * 2 1 4 4 S 1.65598 * 119.99694 * 179.97438 * 2 1 3 5 5 O 1.42096 * 104.27899 * 333.93126 * 4 2 1 6 6 O 1.42110 * 104.27714 * 206.07350 * 4 2 1 7 7 C 1.81399 * 104.44806 * 90.00463 * 4 2 1 8 8 C 1.53004 * 109.47265 * 179.97438 * 7 4 2 9 9 N 1.46898 * 109.46850 * 180.02562 * 8 7 4 10 10 C 1.46845 * 111.00565 * 45.79157 * 9 8 7 11 11 C 1.53034 * 109.52676 * 185.84030 * 10 9 8 12 12 C 1.53126 * 109.27454 * 300.81918 * 11 10 9 13 13 C 1.53119 * 109.16048 * 57.65518 * 12 11 10 14 14 H 1.09004 * 109.50364 * 62.32521 * 13 12 11 15 15 C 1.50705 * 109.50316 * 182.40389 * 13 12 11 16 16 H 1.07990 * 119.99883 * 119.99811 * 15 13 12 17 17 C 1.37878 * 119.99667 * 300.00057 * 15 13 12 18 18 N 1.31517 * 119.99544 * 179.97438 * 17 15 13 19 19 Si 1.86795 * 120.00340 * 359.97438 * 17 15 13 20 20 H 1.48501 * 109.47550 * 89.99860 * 19 17 15 21 21 H 1.48497 * 109.47188 * 210.00399 * 19 17 15 22 22 H 1.48505 * 109.47004 * 330.00168 * 19 17 15 23 23 C 1.46850 * 110.99813 * 170.00223 * 9 8 7 24 24 H 1.09000 * 109.47373 * 270.00760 * 1 2 3 25 25 H 1.09007 * 109.46901 * 30.00166 * 1 2 3 26 26 H 1.09001 * 109.47390 * 150.00021 * 1 2 3 27 27 H 1.08998 * 109.46952 * 269.99294 * 3 2 1 28 28 H 1.09004 * 109.46906 * 29.99626 * 3 2 1 29 29 H 1.08999 * 109.46936 * 149.99910 * 3 2 1 30 30 H 1.09006 * 109.47036 * 59.99791 * 7 4 2 31 31 H 1.08999 * 109.46926 * 300.00136 * 7 4 2 32 32 H 1.08995 * 109.46637 * 59.99838 * 8 7 4 33 33 H 1.09001 * 109.46762 * 299.99795 * 8 7 4 34 34 H 1.08995 * 109.46315 * 65.81881 * 10 9 8 35 35 H 1.09005 * 109.45975 * 305.85394 * 10 9 8 36 36 H 1.08997 * 109.50792 * 180.88024 * 11 10 9 37 37 H 1.09006 * 109.50471 * 60.75677 * 11 10 9 38 38 H 1.08999 * 109.52028 * 177.55723 * 12 11 10 39 39 H 1.09000 * 109.52072 * 297.68377 * 12 11 10 40 40 H 0.96999 * 119.99553 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.46186 * 54.13967 * 23 9 8 42 42 H 1.09004 * 109.45360 * 294.17122 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2929 -1.4342 0.0006 5 8 1.3969 -2.3558 0.6062 6 8 3.5395 -1.1189 0.6058 7 6 2.5193 -1.8269 -1.7558 8 6 3.2819 -3.1466 -1.8892 9 7 3.4657 -3.4642 -3.3116 10 6 3.9194 -2.2850 -4.0599 11 6 3.9600 -2.6119 -5.5544 12 6 4.9139 -3.7866 -5.7891 13 6 4.4464 -4.9867 -4.9611 14 1 3.4546 -5.2938 -5.2931 15 6 5.4131 -6.1289 -5.1404 16 1 5.9341 -6.5346 -4.2859 17 6 5.6324 -6.6558 -6.3955 18 7 6.4764 -7.6522 -6.5521 19 14 4.7307 -5.9545 -7.8735 20 1 5.5331 -4.8548 -8.4669 21 1 4.5316 -7.0234 -8.8849 22 1 3.4105 -5.4276 -7.4437 23 6 4.3917 -4.5909 -3.4838 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 2.3793 1.5833 -1.0277 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 3.0867 -1.0296 -2.2362 31 1 1.5452 -1.9195 -2.2358 32 1 2.7149 -3.9439 -1.4088 33 1 4.2561 -3.0533 -1.4093 34 1 4.9167 -2.0024 -3.7227 35 1 3.2302 -1.4582 -3.8876 36 1 4.3117 -1.7414 -6.1080 37 1 2.9603 -2.8812 -5.8953 38 1 4.9128 -4.0510 -6.8465 39 1 5.9218 -3.5036 -5.4854 40 1 6.6303 -8.0231 -7.4350 41 1 4.0455 -5.4390 -2.8931 42 1 5.3868 -4.2974 -3.1493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397693840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:53 Heat of formation + Delta-G solvation = -58.302384 kcal Electronic energy + Delta-G solvation = -22117.582659 eV Core-core repulsion = 18839.228036 eV Total energy + Delta-G solvation = -3278.354623 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.76440 -37.35384 -36.54848 -36.05632 -34.68429 -32.35417 -30.62638 -29.89964 -28.46152 -25.28865 -25.00550 -24.31244 -22.11353 -20.82860 -19.08207 -18.97937 -17.96835 -16.86425 -16.65367 -16.60408 -15.67339 -15.29234 -14.78255 -14.57833 -14.33008 -14.04852 -13.68244 -13.39685 -13.14822 -13.10781 -12.96248 -12.67913 -12.60912 -12.27212 -12.19536 -11.95413 -11.91405 -11.80775 -11.47473 -11.21637 -11.08070 -10.96227 -10.46656 -10.12456 -9.98454 -9.73283 -9.41679 -9.15236 -8.96546 -8.53294 -7.97350 -6.08193 -4.07649 -0.00994 2.35564 3.26562 3.38112 3.41039 3.56753 3.90801 4.18864 4.31158 4.40862 4.48779 4.59225 4.94379 4.99513 5.19247 5.22135 5.25028 5.32575 5.39310 5.41635 5.42713 5.53237 5.57634 5.63891 5.72978 5.91151 6.07759 6.11810 6.20796 6.23557 6.39674 6.54798 6.72875 6.78030 7.14444 7.30208 7.43143 7.60286 7.81533 8.50329 8.94974 9.54192 11.05055 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.035148 B = 0.003585 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.446111 B = 7808.642276 C = 8108.413086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.010 6.010 3 C 0.082 3.918 4 S 2.610 3.390 5 O -0.951 6.951 6 O -0.954 6.954 7 C -0.629 4.629 8 C 0.066 3.934 9 N -0.532 5.532 10 C 0.053 3.947 11 C -0.120 4.120 12 C -0.124 4.124 13 C 0.021 3.979 14 H 0.037 0.963 15 C -0.515 4.515 16 H 0.073 0.927 17 C 0.070 3.930 18 N -0.901 5.901 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.298 1.298 22 H -0.264 1.264 23 C 0.072 3.928 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.463 19.320 10.192 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.849 5.849 3 C -0.064 4.064 4 S 2.703 3.297 5 O -0.941 6.941 6 O -0.944 6.944 7 C -0.759 4.759 8 C -0.064 4.064 9 N -0.258 5.258 10 C -0.075 4.075 11 C -0.158 4.158 12 C -0.161 4.161 13 C 0.001 3.999 14 H 0.055 0.945 15 C -0.554 4.554 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.539 5.539 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.226 1.226 22 H -0.189 1.189 23 C -0.055 4.055 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -11.579 18.614 10.659 24.375 hybrid contribution 0.299 0.823 -1.392 1.645 sum -11.279 19.437 9.267 24.308 Atomic orbital electron populations 1.21487 0.78164 1.03091 1.02453 1.57386 1.15294 1.21863 1.90359 1.21617 0.97610 0.85131 1.02028 1.05134 0.73873 0.73054 0.77639 1.93600 1.64555 1.62292 1.73649 1.93585 1.44154 1.82875 1.73799 1.30831 1.11140 1.07706 1.26229 1.21753 0.98372 0.93314 0.92965 1.62141 1.50147 1.07092 1.06371 1.22168 0.97875 0.92542 0.94901 1.21661 1.01007 0.98753 0.94330 1.22047 0.98247 0.95737 1.00116 1.19163 0.97733 0.93055 0.89919 0.94524 1.20991 1.24256 1.14932 0.95191 0.90869 1.24987 0.94687 0.94597 0.98843 1.69901 1.35429 1.25231 1.23386 0.86815 0.81143 0.77641 0.82474 1.20739 1.22586 1.18860 1.22191 0.92155 0.91049 1.00065 0.92271 0.90999 0.90835 0.92695 0.90662 0.89674 0.84784 0.84136 0.89301 0.93566 0.95078 0.91379 0.92688 0.91755 0.93426 0.92451 0.92654 0.91041 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.20 59.85 0.61 1.20 16 2 N -1.01 -8.13 3.52 -129.20 -0.45 -8.59 16 3 C 0.08 0.51 10.64 59.85 0.64 1.15 16 4 S 2.61 28.22 5.38 -107.50 -0.58 27.65 16 5 O -0.95 -13.06 17.09 -57.54 -0.98 -14.04 16 6 O -0.95 -13.08 16.57 -57.54 -0.95 -14.03 16 7 C -0.63 -6.33 5.43 37.16 0.20 -6.13 16 8 C 0.07 0.90 5.28 -3.82 -0.02 0.88 16 9 N -0.53 -8.91 4.81 -234.67 -1.13 -10.04 16 10 C 0.05 0.81 4.85 -3.84 -0.02 0.79 16 11 C -0.12 -2.03 6.09 -26.65 -0.16 -2.19 16 12 C -0.12 -2.63 4.73 -26.60 -0.13 -2.76 16 13 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 14 H 0.04 0.90 7.21 -51.93 -0.37 0.52 16 15 C -0.52 -14.35 9.15 -34.44 -0.31 -14.66 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 18 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 19 Si 0.89 21.95 24.35 -169.99 -4.14 17.81 16 20 H -0.28 -6.73 6.89 56.52 0.39 -6.34 16 21 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 23 C 0.07 1.44 4.65 -3.83 -0.02 1.43 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 26 H 0.07 0.44 7.79 -51.93 -0.40 0.03 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 29 H 0.08 0.62 6.91 -51.93 -0.36 0.26 16 30 H 0.13 1.15 6.21 -51.92 -0.32 0.83 16 31 H 0.14 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.83 5.81 -51.93 -0.30 0.52 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 1.07 3.34 -51.93 -0.17 0.90 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -34.85 333.70 -8.93 -43.78 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -7.02 Total: -2.72 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 0.52 Total: -18.06 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.81 Total: -45.41 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.94 Total: -28.07 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Atomic # 16 Polarization: 28.22 SS G_CDS: -0.58 Total: 27.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.85 -8.93 -43.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397693840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.524 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds