Wall clock time and date at job start Fri Apr 10 2020 17:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99963 * 2 1 4 4 S 1.65598 * 119.99694 * 179.97438 * 2 1 3 5 5 O 1.42096 * 104.27899 * 333.93126 * 4 2 1 6 6 O 1.42110 * 104.27714 * 206.07350 * 4 2 1 7 7 C 1.81399 * 104.44806 * 90.00463 * 4 2 1 8 8 C 1.53004 * 109.47265 * 179.97438 * 7 4 2 9 9 N 1.46898 * 109.46850 * 180.02562 * 8 7 4 10 10 C 1.46845 * 111.00565 * 45.79157 * 9 8 7 11 11 C 1.53034 * 109.52676 * 185.84030 * 10 9 8 12 12 C 1.53126 * 109.27454 * 300.81918 * 11 10 9 13 13 C 1.53119 * 109.16048 * 57.65518 * 12 11 10 14 14 H 1.09004 * 109.50364 * 62.32521 * 13 12 11 15 15 C 1.50705 * 109.50316 * 182.40389 * 13 12 11 16 16 H 1.07990 * 119.99883 * 119.99811 * 15 13 12 17 17 C 1.37878 * 119.99667 * 300.00057 * 15 13 12 18 18 N 1.31517 * 119.99544 * 179.97438 * 17 15 13 19 19 Si 1.86795 * 120.00340 * 359.97438 * 17 15 13 20 20 H 1.48501 * 109.47550 * 89.99860 * 19 17 15 21 21 H 1.48497 * 109.47188 * 210.00399 * 19 17 15 22 22 H 1.48505 * 109.47004 * 330.00168 * 19 17 15 23 23 C 1.46850 * 110.99813 * 170.00223 * 9 8 7 24 24 H 1.09000 * 109.47373 * 270.00760 * 1 2 3 25 25 H 1.09007 * 109.46901 * 30.00166 * 1 2 3 26 26 H 1.09001 * 109.47390 * 150.00021 * 1 2 3 27 27 H 1.08998 * 109.46952 * 269.99294 * 3 2 1 28 28 H 1.09004 * 109.46906 * 29.99626 * 3 2 1 29 29 H 1.08999 * 109.46936 * 149.99910 * 3 2 1 30 30 H 1.09006 * 109.47036 * 59.99791 * 7 4 2 31 31 H 1.08999 * 109.46926 * 300.00136 * 7 4 2 32 32 H 1.08995 * 109.46637 * 59.99838 * 8 7 4 33 33 H 1.09001 * 109.46762 * 299.99795 * 8 7 4 34 34 H 1.08995 * 109.46315 * 65.81881 * 10 9 8 35 35 H 1.09005 * 109.45975 * 305.85394 * 10 9 8 36 36 H 1.08997 * 109.50792 * 180.88024 * 11 10 9 37 37 H 1.09006 * 109.50471 * 60.75677 * 11 10 9 38 38 H 1.08999 * 109.52028 * 177.55723 * 12 11 10 39 39 H 1.09000 * 109.52072 * 297.68377 * 12 11 10 40 40 H 0.96999 * 119.99553 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.46186 * 54.13967 * 23 9 8 42 42 H 1.09004 * 109.45360 * 294.17122 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2929 -1.4342 0.0006 5 8 1.3969 -2.3558 0.6062 6 8 3.5395 -1.1189 0.6058 7 6 2.5193 -1.8269 -1.7558 8 6 3.2819 -3.1466 -1.8892 9 7 3.4657 -3.4642 -3.3116 10 6 3.9194 -2.2850 -4.0599 11 6 3.9600 -2.6119 -5.5544 12 6 4.9139 -3.7866 -5.7891 13 6 4.4464 -4.9867 -4.9611 14 1 3.4546 -5.2938 -5.2931 15 6 5.4131 -6.1289 -5.1404 16 1 5.9341 -6.5346 -4.2859 17 6 5.6324 -6.6558 -6.3955 18 7 6.4764 -7.6522 -6.5521 19 14 4.7307 -5.9545 -7.8735 20 1 5.5331 -4.8548 -8.4669 21 1 4.5316 -7.0234 -8.8849 22 1 3.4105 -5.4276 -7.4437 23 6 4.3917 -4.5909 -3.4838 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 2.3793 1.5833 -1.0277 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 3.0867 -1.0296 -2.2362 31 1 1.5452 -1.9195 -2.2358 32 1 2.7149 -3.9439 -1.4088 33 1 4.2561 -3.0533 -1.4093 34 1 4.9167 -2.0024 -3.7227 35 1 3.2302 -1.4582 -3.8876 36 1 4.3117 -1.7414 -6.1080 37 1 2.9603 -2.8812 -5.8953 38 1 4.9128 -4.0510 -6.8465 39 1 5.9218 -3.5036 -5.4854 40 1 6.6303 -8.0231 -7.4350 41 1 4.0455 -5.4390 -2.8931 42 1 5.3868 -4.2974 -3.1493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397693840.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:53 Heat of formation + Delta-G solvation = -86.473367 kcal Electronic energy + Delta-G solvation = -22118.804244 eV Core-core repulsion = 18839.228036 eV Total energy + Delta-G solvation = -3279.576208 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16166 -38.29431 -37.23414 -36.87103 -36.22169 -34.25345 -32.11914 -31.27456 -28.91389 -26.90481 -26.07455 -25.37180 -23.52692 -22.28917 -20.54631 -19.88574 -18.93960 -18.62609 -17.70721 -17.39564 -17.12842 -16.24872 -15.95828 -15.67340 -15.38744 -15.32553 -15.12505 -14.82714 -14.39351 -14.32322 -14.00895 -13.73351 -13.52214 -13.32115 -13.22369 -13.18705 -12.94055 -12.74372 -12.57605 -12.51699 -12.41136 -12.36366 -11.96539 -11.75941 -11.66897 -11.42900 -11.02572 -10.81233 -10.62450 -9.97280 -9.29900 -8.31035 -6.35229 -0.83707 1.29825 1.36644 1.47897 1.64651 2.32643 2.69766 3.02711 3.04821 3.11416 3.42201 3.76868 3.88030 3.99513 4.14611 4.20774 4.33253 4.40725 4.48028 4.53328 4.58892 4.63617 4.68732 4.77223 4.81210 4.83280 4.94412 5.00327 5.01256 5.02171 5.08391 5.13602 5.23250 5.42403 5.59138 5.61369 5.71392 6.07062 6.13119 6.31655 6.72204 7.30526 8.85991 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.035148 B = 0.003585 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.446111 B = 7808.642276 C = 8108.413086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.006 6.006 3 C 0.072 3.928 4 S 2.623 3.377 5 O -0.986 6.986 6 O -0.989 6.989 7 C -0.616 4.616 8 C 0.054 3.946 9 N -0.535 5.535 10 C 0.047 3.953 11 C -0.115 4.115 12 C -0.125 4.125 13 C 0.020 3.980 14 H 0.028 0.972 15 C -0.522 4.522 16 H 0.031 0.969 17 C 0.011 3.989 18 N -0.952 5.952 19 Si 0.955 3.045 20 H -0.265 1.265 21 H -0.300 1.300 22 H -0.245 1.245 23 C 0.080 3.920 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.036 0.964 39 H 0.048 0.952 40 H 0.266 0.734 41 H 0.061 0.939 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.681 22.893 9.239 28.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.846 5.846 3 C -0.072 4.072 4 S 2.717 3.283 5 O -0.976 6.976 6 O -0.979 6.979 7 C -0.746 4.746 8 C -0.075 4.075 9 N -0.260 5.260 10 C -0.081 4.081 11 C -0.152 4.152 12 C -0.163 4.163 13 C 0.001 3.999 14 H 0.047 0.953 15 C -0.561 4.561 16 H 0.049 0.951 17 C -0.186 4.186 18 N -0.592 5.592 19 Si 0.782 3.218 20 H -0.192 1.192 21 H -0.228 1.228 22 H -0.169 1.169 23 C -0.048 4.048 24 H 0.073 0.927 25 H 0.119 0.881 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.176 0.824 31 H 0.182 0.818 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -13.809 22.215 9.744 27.913 hybrid contribution 1.015 -0.301 -0.992 1.451 sum -12.794 21.914 8.752 26.842 Atomic orbital electron populations 1.21731 0.76893 1.04702 1.02836 1.57143 1.15994 1.21286 1.90227 1.21847 0.97145 0.84561 1.03683 1.04488 0.72883 0.73155 0.77748 1.93553 1.65230 1.63976 1.74874 1.93540 1.45871 1.83474 1.75007 1.30718 1.12159 1.06086 1.25631 1.21862 0.99031 0.95553 0.91098 1.62066 1.48633 1.06939 1.08398 1.22364 0.99293 0.92887 0.93514 1.21651 0.99769 0.97777 0.96042 1.21950 0.99117 0.96607 0.98612 1.19071 0.95635 0.92550 0.92652 0.95349 1.21346 1.24470 1.16342 0.93927 0.95104 1.25895 0.95581 0.94897 1.02235 1.70059 1.37650 1.27210 1.24277 0.85741 0.80694 0.77112 0.78257 1.19150 1.22840 1.16919 1.21898 0.92601 0.92587 0.97728 0.92661 0.88099 0.90537 0.90357 0.88732 0.91165 0.82446 0.81840 0.89387 0.93819 0.94944 0.87025 0.89497 0.91437 0.94557 0.93364 0.92550 0.92061 0.96142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.20 127.77 1.30 2.10 16 2 N -1.01 -13.33 3.52 -562.66 -1.98 -15.31 16 3 C 0.07 0.68 10.64 127.77 1.36 2.04 16 4 S 2.62 52.20 5.38 -56.49 -0.30 51.90 16 5 O -0.99 -26.27 17.09 -127.65 -2.18 -28.45 16 6 O -0.99 -26.31 16.57 -127.65 -2.12 -28.43 16 7 C -0.62 -10.21 5.43 71.98 0.39 -9.82 16 8 C 0.05 1.38 5.28 86.30 0.46 1.84 16 9 N -0.54 -16.70 4.81 -896.37 -4.31 -21.01 16 10 C 0.05 1.23 4.85 86.33 0.42 1.64 16 11 C -0.11 -3.41 6.09 30.65 0.19 -3.23 16 12 C -0.13 -5.09 4.73 30.68 0.15 -4.95 16 13 C 0.02 0.94 1.85 -11.49 -0.02 0.92 16 14 H 0.03 1.37 7.21 -2.38 -0.02 1.35 16 15 C -0.52 -30.19 9.15 25.60 0.23 -29.95 16 16 H 0.03 1.97 7.99 -2.92 -0.02 1.95 16 17 C 0.01 0.63 5.45 84.65 0.46 1.09 16 18 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 19 Si 0.96 45.34 24.35 68.60 1.67 47.01 16 20 H -0.27 -11.89 6.89 99.48 0.69 -11.20 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.25 -10.81 6.53 99.48 0.65 -10.16 16 23 C 0.08 3.20 4.65 86.32 0.40 3.60 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.10 0.39 8.07 -2.38 -0.02 0.37 16 26 H 0.08 0.69 7.79 -2.39 -0.02 0.67 16 27 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.09 0.53 8.07 -2.39 -0.02 0.51 16 29 H 0.07 0.89 6.91 -2.39 -0.02 0.87 16 30 H 0.16 1.89 6.21 -2.39 -0.01 1.88 16 31 H 0.16 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 34 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 35 H 0.11 2.01 5.81 -2.38 -0.01 2.00 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.04 1.55 3.34 -2.39 -0.01 1.54 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 41 H 0.06 2.52 8.12 -2.38 -0.02 2.50 16 42 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -78.66 333.70 -2.67 -81.34 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.91 Total: 7.68 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 5.33 Total: -34.71 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -5.99 Total: -96.33 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -4.30 Total: -56.88 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.67 Total: 47.01 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.30 Total: 51.90 kcal Total: -78.66 -2.67 -81.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397693840.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.135 kcal (2) G-P(sol) polarization free energy of solvation -78.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds