Wall clock time and date at job start Fri Apr 10 2020 17:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00369 * 2 1 4 4 C 1.53125 * 109.52365 * 300.00548 * 3 2 1 5 5 C 1.53033 * 109.28287 * 177.55295 * 4 3 2 6 6 N 1.46851 * 109.52231 * 300.82460 * 5 4 3 7 7 C 1.46898 * 110.99682 * 185.83477 * 6 5 4 8 8 C 1.53006 * 109.47006 * 170.00115 * 7 6 5 9 9 C 1.50698 * 109.47184 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47418 * 89.99710 * 13 11 9 15 15 H 1.48498 * 109.47091 * 209.99770 * 13 11 9 16 16 H 1.48508 * 109.47394 * 329.99535 * 13 11 9 17 17 C 1.46846 * 111.19864 * 61.73920 * 6 5 4 18 18 C 1.53033 * 109.52460 * 298.25500 * 17 6 5 19 19 S 1.65604 * 120.00219 * 180.02562 * 2 1 3 20 20 C 1.81397 * 104.44720 * 269.99480 * 19 2 1 21 21 O 1.42101 * 104.27599 * 26.06566 * 19 2 1 22 22 O 1.42097 * 104.27983 * 153.92365 * 19 2 1 23 23 H 1.08990 * 109.47513 * 89.99449 * 1 2 3 24 24 H 1.09002 * 109.46731 * 210.00090 * 1 2 3 25 25 H 1.08997 * 109.47091 * 329.99206 * 1 2 3 26 26 H 1.08998 * 109.52862 * 179.87845 * 3 2 1 27 27 H 1.09005 * 109.50073 * 57.61270 * 4 3 2 28 28 H 1.08991 * 109.50379 * 297.49785 * 4 3 2 29 29 H 1.08989 * 109.46624 * 180.80484 * 5 4 3 30 30 H 1.09002 * 109.45127 * 60.82884 * 5 4 3 31 31 H 1.09001 * 109.47392 * 50.00413 * 7 6 5 32 32 H 1.09001 * 109.47520 * 290.00136 * 7 6 5 33 33 H 1.09001 * 109.47002 * 299.99782 * 8 7 6 34 34 H 1.08993 * 109.46955 * 60.00219 * 8 7 6 35 35 H 0.96996 * 120.00505 * 179.97438 * 12 11 9 36 36 H 1.09002 * 109.46555 * 58.27646 * 17 6 5 37 37 H 1.09001 * 109.46296 * 178.24247 * 17 6 5 38 38 H 1.08997 * 109.50475 * 299.23909 * 18 17 6 39 39 H 1.09002 * 109.50799 * 179.12007 * 18 17 6 40 40 H 1.09002 * 109.47074 * 59.99612 * 20 19 2 41 41 H 1.08998 * 109.47363 * 179.97438 * 20 19 2 42 42 H 1.09003 * 109.47659 * 299.99875 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.8284 2.0728 -1.2498 5 6 2.5494 3.4221 -1.2138 6 7 2.1568 4.1561 -0.0039 7 6 2.7217 5.5122 -0.0044 8 6 2.0972 6.3252 1.1314 9 6 2.6762 7.7165 1.1306 10 1 3.4159 7.9931 0.3938 11 6 2.2624 8.6360 2.0709 12 7 1.3621 8.2990 2.9683 13 14 2.9806 10.3604 2.0703 14 1 2.1528 11.2411 1.2076 15 1 2.9907 10.8929 3.4564 16 1 4.3695 10.3180 1.5462 17 6 2.5438 3.4253 1.2095 18 6 1.8225 2.0761 1.2459 19 16 2.2930 -1.4341 -0.0006 20 6 2.5195 -1.8268 1.7558 21 8 1.3969 -2.3559 -0.6062 22 8 3.5394 -1.1189 -0.6058 23 1 -0.3634 0.0001 -1.0275 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 3.2694 1.0705 0.0022 27 1 0.7510 2.2364 -1.2721 28 1 2.1319 1.5217 -2.1398 29 1 2.2776 4.0028 -2.0951 30 1 3.6269 3.2578 -1.2052 31 1 2.5066 5.9951 -0.9577 32 1 3.8007 5.4564 0.1393 33 1 1.0182 6.3810 0.9877 34 1 2.3124 5.8424 2.0846 35 1 1.0712 8.9457 3.6301 36 1 3.6213 3.2612 1.2067 37 1 2.2677 4.0084 2.0882 38 1 0.7451 2.2397 1.2628 39 1 2.1219 1.5273 2.1388 40 1 1.5453 -1.9195 2.2359 41 1 3.0620 -2.7673 1.8509 42 1 3.0868 -1.0296 2.2362 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407949761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:55 Heat of formation + Delta-G solvation = -70.678703 kcal Electronic energy + Delta-G solvation = -22072.562859 eV Core-core repulsion = 18793.671558 eV Total energy + Delta-G solvation = -3278.891300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.20721 -37.36341 -36.34863 -36.07752 -33.37178 -31.76078 -30.72860 -29.76268 -28.92072 -26.71794 -24.60655 -23.14944 -22.52376 -20.20659 -19.48452 -19.05868 -17.86273 -16.72185 -16.62049 -16.30881 -15.30795 -14.80768 -14.60708 -14.48841 -14.21900 -13.89135 -13.68615 -13.49932 -13.34385 -13.16940 -12.80654 -12.64594 -12.32784 -12.29121 -12.16034 -11.87920 -11.76921 -11.34048 -11.18690 -11.09978 -10.99846 -10.91322 -10.71310 -10.51790 -10.30745 -9.83525 -9.36171 -9.16189 -9.05730 -8.34059 -7.73055 -6.01101 -4.03219 -0.00168 2.36794 3.31280 3.37574 3.40653 3.61948 3.86458 4.32752 4.34797 4.51399 4.56595 4.62460 4.88084 4.95859 5.13479 5.30370 5.35017 5.36852 5.38501 5.47489 5.57645 5.60636 5.71116 5.77835 5.90618 5.93026 6.13348 6.21425 6.24144 6.33122 6.46086 6.48758 6.54250 6.96156 7.49019 7.57241 7.79019 7.88597 8.06921 8.42553 9.04055 9.60544 11.10238 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.039468 B = 0.003089 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.262876 B = 9061.214572 C = 9206.966273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.996 5.996 3 C 0.145 3.855 4 C -0.118 4.118 5 C 0.055 3.945 6 N -0.539 5.539 7 C 0.063 3.937 8 C 0.028 3.972 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.055 3.945 18 C -0.126 4.126 19 S 2.608 3.392 20 C -0.675 4.675 21 O -0.958 6.958 22 O -0.955 6.955 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.024 0.976 34 H 0.017 0.983 35 H 0.260 0.740 36 H 0.028 0.972 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 -20.214 -3.009 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.834 5.834 3 C 0.040 3.960 4 C -0.157 4.157 5 C -0.074 4.074 6 N -0.263 5.263 7 C -0.064 4.064 8 C -0.009 4.009 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.074 4.074 18 C -0.166 4.166 19 S 2.701 3.299 20 C -0.824 4.824 21 O -0.948 6.948 22 O -0.945 6.945 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.444 -20.611 -3.612 20.930 hybrid contribution 1.127 1.074 0.880 1.789 sum 0.684 -19.536 -2.732 19.738 Atomic orbital electron populations 1.21443 0.78297 1.02953 1.02535 1.57498 1.15286 1.20994 1.89590 1.21098 0.95963 0.82426 0.96518 1.21868 1.02093 0.95033 0.96728 1.22042 0.96945 0.93971 0.94433 1.62040 1.60281 1.03275 1.00743 1.22324 0.95895 0.86346 1.01795 1.19098 0.96713 0.93134 0.91963 1.21203 1.23539 0.96846 1.14496 0.92809 1.24983 0.95118 0.98666 0.95522 1.69962 1.30809 1.34974 1.17538 0.86603 0.79520 0.84729 0.77179 1.20647 1.21260 1.19934 1.22080 0.96587 0.93578 0.95134 1.22016 1.02622 0.95585 0.96342 1.04956 0.73997 0.73331 0.77598 1.30598 1.11733 1.11989 1.28129 1.93600 1.64663 1.62942 1.73636 1.93609 1.44345 1.82967 1.73611 0.92256 0.91464 0.90251 0.88541 0.90496 0.91502 0.90649 0.95291 0.92032 0.96190 0.95731 0.96512 0.93021 0.95412 0.89049 0.90171 0.91758 0.85427 0.85680 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 9.22 59.84 0.55 1.31 16 2 N -1.00 -9.47 3.01 -114.48 -0.34 -9.81 16 3 C 0.15 1.64 2.52 -67.80 -0.17 1.46 16 4 C -0.12 -1.43 5.41 -26.65 -0.14 -1.58 16 5 C 0.06 0.79 5.46 -3.83 -0.02 0.77 16 6 N -0.54 -9.25 4.66 -234.67 -1.09 -10.34 16 7 C 0.06 1.29 4.90 -3.82 -0.02 1.27 16 8 C 0.03 0.71 4.90 -27.88 -0.14 0.58 16 9 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 10 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.06 0.85 5.29 -3.84 -0.02 0.83 16 18 C -0.13 -1.48 5.40 -26.65 -0.14 -1.63 16 19 S 2.61 24.63 6.01 -107.50 -0.65 23.98 16 20 C -0.68 -3.91 10.99 101.05 1.11 -2.80 16 21 O -0.96 -11.69 17.09 -57.54 -0.98 -12.68 16 22 O -0.95 -12.31 16.57 -57.54 -0.95 -13.26 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.43 7.79 -51.93 -0.40 0.02 16 25 H 0.08 0.62 6.37 -51.93 -0.33 0.28 16 26 H 0.10 1.11 6.88 -51.93 -0.36 0.76 16 27 H 0.08 0.93 7.60 -51.93 -0.39 0.54 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.05 8.01 -51.94 -0.42 0.64 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 1.25 7.99 -51.93 -0.41 0.84 16 32 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.02 0.44 6.43 -51.93 -0.33 0.11 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 1.61 6.21 -51.93 -0.32 1.29 16 38 H 0.08 0.96 6.57 -51.93 -0.34 0.62 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.13 0.67 8.14 -51.92 -0.42 0.24 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -34.03 341.44 -9.65 -43.68 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -7.08 Total: -4.30 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 0.60 Total: -13.10 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.70 Total: -45.88 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.94 Total: -25.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 24.63 SS G_CDS: -0.65 Total: 23.98 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.03 -9.65 -43.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407949761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.998 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds