Wall clock time and date at job start Fri Apr 10 2020 17:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00369 * 2 1 4 4 C 1.53125 * 109.52365 * 300.00548 * 3 2 1 5 5 C 1.53033 * 109.28287 * 177.55295 * 4 3 2 6 6 N 1.46851 * 109.52231 * 300.82460 * 5 4 3 7 7 C 1.46898 * 110.99682 * 185.83477 * 6 5 4 8 8 C 1.53006 * 109.47006 * 170.00115 * 7 6 5 9 9 C 1.50698 * 109.47184 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99819 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47418 * 89.99710 * 13 11 9 15 15 H 1.48498 * 109.47091 * 209.99770 * 13 11 9 16 16 H 1.48508 * 109.47394 * 329.99535 * 13 11 9 17 17 C 1.46846 * 111.19864 * 61.73920 * 6 5 4 18 18 C 1.53033 * 109.52460 * 298.25500 * 17 6 5 19 19 S 1.65604 * 120.00219 * 180.02562 * 2 1 3 20 20 C 1.81397 * 104.44720 * 269.99480 * 19 2 1 21 21 O 1.42101 * 104.27599 * 26.06566 * 19 2 1 22 22 O 1.42097 * 104.27983 * 153.92365 * 19 2 1 23 23 H 1.08990 * 109.47513 * 89.99449 * 1 2 3 24 24 H 1.09002 * 109.46731 * 210.00090 * 1 2 3 25 25 H 1.08997 * 109.47091 * 329.99206 * 1 2 3 26 26 H 1.08998 * 109.52862 * 179.87845 * 3 2 1 27 27 H 1.09005 * 109.50073 * 57.61270 * 4 3 2 28 28 H 1.08991 * 109.50379 * 297.49785 * 4 3 2 29 29 H 1.08989 * 109.46624 * 180.80484 * 5 4 3 30 30 H 1.09002 * 109.45127 * 60.82884 * 5 4 3 31 31 H 1.09001 * 109.47392 * 50.00413 * 7 6 5 32 32 H 1.09001 * 109.47520 * 290.00136 * 7 6 5 33 33 H 1.09001 * 109.47002 * 299.99782 * 8 7 6 34 34 H 1.08993 * 109.46955 * 60.00219 * 8 7 6 35 35 H 0.96996 * 120.00505 * 179.97438 * 12 11 9 36 36 H 1.09002 * 109.46555 * 58.27646 * 17 6 5 37 37 H 1.09001 * 109.46296 * 178.24247 * 17 6 5 38 38 H 1.08997 * 109.50475 * 299.23909 * 18 17 6 39 39 H 1.09002 * 109.50799 * 179.12007 * 18 17 6 40 40 H 1.09002 * 109.47074 * 59.99612 * 20 19 2 41 41 H 1.08998 * 109.47363 * 179.97438 * 20 19 2 42 42 H 1.09003 * 109.47659 * 299.99875 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.8284 2.0728 -1.2498 5 6 2.5494 3.4221 -1.2138 6 7 2.1568 4.1561 -0.0039 7 6 2.7217 5.5122 -0.0044 8 6 2.0972 6.3252 1.1314 9 6 2.6762 7.7165 1.1306 10 1 3.4159 7.9931 0.3938 11 6 2.2624 8.6360 2.0709 12 7 1.3621 8.2990 2.9683 13 14 2.9806 10.3604 2.0703 14 1 2.1528 11.2411 1.2076 15 1 2.9907 10.8929 3.4564 16 1 4.3695 10.3180 1.5462 17 6 2.5438 3.4253 1.2095 18 6 1.8225 2.0761 1.2459 19 16 2.2930 -1.4341 -0.0006 20 6 2.5195 -1.8268 1.7558 21 8 1.3969 -2.3559 -0.6062 22 8 3.5394 -1.1189 -0.6058 23 1 -0.3634 0.0001 -1.0275 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 3.2694 1.0705 0.0022 27 1 0.7510 2.2364 -1.2721 28 1 2.1319 1.5217 -2.1398 29 1 2.2776 4.0028 -2.0951 30 1 3.6269 3.2578 -1.2052 31 1 2.5066 5.9951 -0.9577 32 1 3.8007 5.4564 0.1393 33 1 1.0182 6.3810 0.9877 34 1 2.3124 5.8424 2.0846 35 1 1.0712 8.9457 3.6301 36 1 3.6213 3.2612 1.2067 37 1 2.2677 4.0084 2.0882 38 1 0.7451 2.2397 1.2628 39 1 2.1219 1.5273 2.1388 40 1 1.5453 -1.9195 2.2359 41 1 3.0620 -2.7673 1.8509 42 1 3.0868 -1.0296 2.2362 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407949761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:55 Heat of formation + Delta-G solvation = -96.264188 kcal Electronic energy + Delta-G solvation = -22073.672328 eV Core-core repulsion = 18793.671558 eV Total energy + Delta-G solvation = -3280.000770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31977 -38.20136 -37.42676 -36.96318 -35.26064 -33.21937 -31.83317 -30.57461 -30.24439 -27.63422 -26.27705 -24.43792 -23.75523 -21.87288 -20.56850 -19.83613 -18.65077 -18.57423 -17.41992 -17.32305 -16.54389 -16.43710 -16.06577 -15.56167 -15.28310 -15.03100 -14.62976 -14.43599 -14.17835 -14.04174 -13.97765 -13.89683 -13.50485 -13.26711 -13.16699 -13.06461 -12.94735 -12.86966 -12.61112 -12.46073 -12.15674 -12.14492 -12.02271 -11.86848 -11.61947 -11.37626 -11.21046 -11.08596 -10.50801 -9.88460 -9.12911 -8.18053 -6.28524 -0.69296 1.41767 1.42707 1.53579 1.64026 2.41841 2.95408 3.10614 3.15502 3.16860 3.59633 3.88400 3.97012 4.08411 4.15764 4.21396 4.26248 4.41034 4.52275 4.56846 4.61369 4.70666 4.75070 4.78621 4.88636 4.97042 4.98576 5.04720 5.09538 5.12038 5.23722 5.24049 5.46861 5.52371 5.63004 5.72342 5.82209 6.15123 6.35553 6.39718 6.88639 7.40252 8.93812 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.039468 B = 0.003089 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.262876 B = 9061.214572 C = 9206.966273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.996 5.996 3 C 0.151 3.849 4 C -0.115 4.115 5 C 0.055 3.945 6 N -0.548 5.548 7 C 0.078 3.922 8 C 0.038 3.962 9 C -0.545 4.545 10 H 0.058 0.942 11 C 0.003 3.997 12 N -0.930 5.930 13 Si 0.963 3.037 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.265 1.265 17 C 0.053 3.947 18 C -0.117 4.117 19 S 2.611 3.389 20 C -0.653 4.653 21 O -0.991 6.991 22 O -0.996 6.996 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.018 0.982 33 H -0.007 1.007 34 H -0.002 1.002 35 H 0.263 0.737 36 H 0.032 0.968 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 -21.067 -2.504 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.833 5.833 3 C 0.044 3.956 4 C -0.154 4.154 5 C -0.073 4.073 6 N -0.273 5.273 7 C -0.049 4.049 8 C 0.000 4.000 9 C -0.583 4.583 10 H 0.076 0.924 11 C -0.195 4.195 12 N -0.570 5.570 13 Si 0.788 3.212 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.189 1.189 17 C -0.076 4.076 18 C -0.156 4.156 19 S 2.709 3.291 20 C -0.807 4.807 21 O -0.982 6.982 22 O -0.986 6.986 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.011 0.989 34 H 0.016 0.984 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.026 -21.474 -3.164 21.706 hybrid contribution 0.956 1.274 0.773 1.770 sum 0.981 -20.200 -2.392 20.365 Atomic orbital electron populations 1.21595 0.77484 1.04170 1.02608 1.57342 1.15745 1.20119 1.90065 1.20917 0.96164 0.82969 0.95523 1.21837 1.01820 0.93957 0.97795 1.22098 0.97424 0.94783 0.93001 1.61967 1.60378 1.02323 1.02608 1.21958 0.95318 0.88011 0.99613 1.18912 0.94847 0.93210 0.92983 1.21642 1.23792 0.98201 1.14714 0.92421 1.25907 0.95403 1.03151 0.95020 1.70091 1.32052 1.36569 1.18250 0.85479 0.79082 0.79230 0.77419 1.19869 1.20712 1.18884 1.22097 0.97349 0.94930 0.93225 1.21948 1.02047 0.93639 0.97949 1.04648 0.72656 0.72597 0.79175 1.30388 1.13715 1.13420 1.23173 1.93557 1.65269 1.63535 1.75795 1.93556 1.45741 1.83381 1.75952 0.92898 0.89428 0.89846 0.88599 0.90448 0.90795 0.90491 0.95004 0.92033 0.96346 0.98883 0.98352 0.92789 0.95026 0.91879 0.90279 0.88929 0.83167 0.83788 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 9.22 127.77 1.18 2.43 16 2 N -1.00 -17.10 3.01 -516.10 -1.55 -18.65 16 3 C 0.15 3.15 2.52 45.07 0.11 3.27 16 4 C -0.11 -2.68 5.41 30.65 0.17 -2.51 16 5 C 0.06 1.56 5.46 86.32 0.47 2.03 16 6 N -0.55 -18.93 4.66 -896.37 -4.17 -23.10 16 7 C 0.08 3.28 4.90 86.31 0.42 3.71 16 8 C 0.04 1.99 4.90 29.85 0.15 2.13 16 9 C -0.54 -30.91 9.11 25.60 0.23 -30.67 16 10 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 11 C 0.00 0.19 5.46 84.65 0.46 0.65 16 12 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 13 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 17 C 0.05 1.62 5.29 86.32 0.46 2.08 16 18 C -0.12 -2.56 5.40 30.65 0.17 -2.39 16 19 S 2.61 44.72 6.01 -56.49 -0.34 44.38 16 20 C -0.65 -5.04 10.99 113.37 1.25 -3.79 16 21 O -0.99 -23.00 17.09 -127.65 -2.18 -25.18 16 22 O -1.00 -24.75 16.57 -127.65 -2.12 -26.86 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.09 0.90 7.79 -2.39 -0.02 0.89 16 25 H 0.08 1.15 6.37 -2.39 -0.02 1.13 16 26 H 0.10 2.06 6.88 -2.39 -0.02 2.05 16 27 H 0.08 1.80 7.60 -2.38 -0.02 1.79 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 2.11 8.01 -2.39 -0.02 2.09 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 2.54 7.99 -2.39 -0.02 2.52 16 32 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.00 -0.10 6.43 -2.39 -0.02 -0.11 16 35 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 2.30 6.21 -2.39 -0.01 2.28 16 38 H 0.08 1.78 6.57 -2.39 -0.02 1.76 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -74.55 341.44 -2.01 -76.56 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 0.98 Total: 5.67 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 5.06 Total: -23.08 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -5.44 Total: -97.48 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -4.30 Total: -52.04 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 44.72 SS G_CDS: -0.34 Total: 44.38 kcal Total: -74.55 -2.01 -76.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407949761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.705 kcal (2) G-P(sol) polarization free energy of solvation -74.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds