Wall clock time and date at job start Fri Apr 10 2020 17:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.51651 * 2 1 4 4 C 1.53241 * 109.49389 * 239.93414 * 2 1 3 5 5 H 1.09000 * 109.62800 * 305.91888 * 4 2 1 6 6 C 1.53000 * 109.62857 * 66.49824 * 4 2 1 7 7 N 1.47082 * 108.52194 * 186.20687 * 4 2 1 8 8 S 1.65597 * 120.88189 * 231.16403 * 7 4 2 9 9 O 1.42104 * 104.27828 * 39.58817 * 8 7 4 10 10 O 1.42093 * 104.27919 * 167.44779 * 8 7 4 11 11 C 1.81405 * 104.44814 * 283.51716 * 8 7 4 12 12 C 1.53002 * 109.46875 * 180.02562 * 11 8 7 13 13 C 1.50701 * 109.47089 * 180.02562 * 12 11 8 14 14 H 1.08003 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99914 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00370 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47044 * 90.00107 * 17 15 13 19 19 H 1.48500 * 109.47293 * 210.00335 * 17 15 13 20 20 H 1.48505 * 109.46897 * 330.00202 * 17 15 13 21 21 C 1.47075 * 118.23656 * 51.18598 * 7 4 2 22 22 C 1.53238 * 108.52357 * 308.81592 * 21 7 4 23 23 N 1.46896 * 109.49527 * 120.06752 * 2 1 3 24 24 C 1.46902 * 111.00356 * 307.21380 * 23 2 1 25 25 H 1.09000 * 109.46887 * 299.92730 * 1 2 3 26 26 H 1.08998 * 109.47242 * 59.93528 * 1 2 3 27 27 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47246 * 51.40817 * 6 4 2 29 29 H 1.08996 * 109.47775 * 171.40895 * 6 4 2 30 30 H 1.09005 * 109.46950 * 291.41448 * 6 4 2 31 31 H 1.08996 * 109.47250 * 299.99617 * 11 8 7 32 32 H 1.09001 * 109.47309 * 60.00037 * 11 8 7 33 33 H 1.09003 * 109.47251 * 299.99373 * 12 11 8 34 34 H 1.09001 * 109.47302 * 59.99812 * 12 11 8 35 35 H 0.96998 * 119.99847 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.63144 * 189.10095 * 21 7 4 37 37 H 1.09007 * 109.78959 * 68.62150 * 21 7 4 38 38 H 1.08998 * 109.49022 * 293.86998 * 22 21 7 39 39 H 1.08997 * 109.51764 * 173.80068 * 22 21 7 40 40 H 1.09008 * 109.46796 * 59.99909 * 24 23 2 41 41 H 1.08997 * 109.47170 * 179.97438 * 24 23 2 42 42 H 1.08996 * 109.46951 * 300.00243 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0414 -0.7237 -1.2502 5 1 1.5958 -1.7169 -1.3063 6 6 1.6711 0.0812 -2.4976 7 7 3.5043 -0.8431 -1.1554 8 16 4.4791 -0.3593 -2.4035 9 8 3.8725 0.8343 -2.8797 10 8 5.7847 -0.3442 -1.8429 11 6 4.3301 -1.6838 -3.6340 12 6 5.1962 -1.3499 -4.8502 13 6 5.0719 -2.4499 -5.8727 14 1 4.4388 -3.3022 -5.6747 15 6 5.7672 -2.3688 -7.0605 16 7 5.6583 -3.3286 -7.9531 17 14 6.8627 -0.8950 -7.4028 18 1 8.2345 -1.1720 -6.9061 19 1 6.9077 -0.6407 -8.8652 20 1 6.3168 0.2992 -6.7092 21 6 4.0782 -1.4040 0.0771 22 6 3.4867 -0.6536 1.2750 23 7 2.0202 -0.6938 1.1984 24 6 1.4141 -0.1359 2.4147 25 1 -0.3633 0.5127 0.8906 26 1 -0.3633 0.5148 -0.8894 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9952 1.1145 -2.3727 29 1 2.1636 -0.3512 -3.3685 30 1 0.5908 0.0540 -2.6401 31 1 4.6649 -2.6247 -3.1974 32 1 3.2890 -1.7769 -3.9433 33 1 4.8617 -0.4089 -5.2871 34 1 6.2371 -1.2570 -4.5406 35 1 6.1471 -3.2713 -8.7889 36 1 5.1611 -1.2805 0.0660 37 1 3.8314 -2.4632 0.1503 38 1 3.8235 0.3829 1.2573 39 1 3.8157 -1.1272 2.1999 40 1 0.3309 -0.2475 2.3648 41 1 1.7940 -0.6680 3.2869 42 1 1.6672 0.9212 2.4948 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408084139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:57 Heat of formation + Delta-G solvation = -54.281965 kcal Electronic energy + Delta-G solvation = -22855.780365 eV Core-core repulsion = 19577.600080 eV Total energy + Delta-G solvation = -3278.180284 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.62605 -37.00142 -35.65317 -35.04665 -33.98325 -33.46910 -31.49095 -28.88214 -28.33122 -26.19736 -25.91503 -23.05145 -22.25993 -21.11133 -20.27835 -18.56565 -17.38081 -16.82456 -16.57660 -15.80596 -15.60866 -15.12414 -14.97382 -14.67313 -14.38672 -14.12465 -13.65924 -13.29026 -12.94217 -12.81626 -12.70247 -12.44704 -12.40414 -11.99162 -11.89101 -11.79300 -11.78802 -11.53655 -11.30149 -11.24583 -11.12508 -11.05929 -10.80706 -10.45319 -10.23463 -10.13351 -9.71722 -9.41829 -8.94859 -8.66342 -8.45343 -6.16563 -4.17777 0.64346 2.87781 3.26231 3.33537 3.37604 3.65349 4.17338 4.35650 4.43584 4.48450 4.67049 4.84660 4.93837 5.09445 5.13101 5.14899 5.24478 5.28111 5.30004 5.38955 5.44767 5.50221 5.54809 5.59978 5.65383 5.68657 5.79058 5.86754 5.91790 6.03092 6.11371 6.29145 6.50772 6.64081 6.82397 6.84714 6.87612 6.93919 7.54707 8.36851 8.84798 9.43108 10.95862 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.031739 B = 0.004426 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.996873 B = 6324.089239 C = 6564.712517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 H 0.048 0.952 4 C 0.163 3.837 5 H 0.082 0.918 6 C -0.186 4.186 7 N -1.004 6.004 8 S 2.587 3.413 9 O -0.961 6.961 10 O -0.969 6.969 11 C -0.584 4.584 12 C -0.006 4.006 13 C -0.519 4.519 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.869 3.131 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.120 3.880 22 C 0.045 3.955 23 N -0.538 5.538 24 C 0.022 3.978 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.032 0.968 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.676 5.730 19.357 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 H 0.066 0.934 4 C 0.057 3.943 5 H 0.100 0.900 6 C -0.244 4.244 7 N -0.841 5.841 8 S 2.687 3.313 9 O -0.951 6.951 10 O -0.959 6.959 11 C -0.716 4.716 12 C -0.045 4.045 13 C -0.558 4.558 14 H 0.096 0.904 15 C -0.131 4.131 16 N -0.533 5.533 17 Si 0.695 3.305 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.006 4.006 22 C -0.085 4.085 23 N -0.263 5.263 24 C -0.126 4.126 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.230 6.000 19.151 22.090 hybrid contribution 0.572 0.798 -0.365 1.048 sum -8.658 6.799 18.786 21.774 Atomic orbital electron populations 1.21958 0.93639 1.02906 1.02222 1.22011 0.95595 0.95881 0.90036 0.93380 1.21070 0.79078 0.99580 0.94604 0.89991 1.22742 1.02539 1.03455 0.95714 1.58020 1.16073 1.80220 1.29826 1.05753 0.73058 0.77508 0.74993 1.93597 1.76016 1.44165 1.81319 1.93500 1.38177 1.87657 1.76587 1.30395 1.10347 1.17024 1.13882 1.19405 0.93952 0.99359 0.91827 1.20851 1.29329 1.05695 0.99925 0.90397 1.24982 0.96197 0.96069 0.95827 1.69883 1.42348 1.32742 1.08370 0.86934 0.81694 0.83870 0.78009 1.19659 1.20722 1.18645 1.21525 0.98819 0.97848 0.82359 1.22442 0.87498 0.99571 0.98948 1.61914 1.06505 1.55612 1.02257 1.22428 1.00595 0.97347 0.92235 0.92271 0.91398 0.91452 0.88353 0.91566 0.90928 0.85640 0.85602 0.94983 0.95493 0.92378 0.88011 0.90705 0.94408 0.89606 0.90822 0.91450 0.95826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.51 37.16 0.32 -0.93 16 2 C 0.07 0.81 2.06 -67.59 -0.14 0.67 16 3 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 4 C 0.16 1.98 3.12 -67.49 -0.21 1.77 16 5 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 6 C -0.19 -2.39 7.18 37.16 0.27 -2.12 16 7 N -1.00 -13.87 3.25 -106.20 -0.34 -14.21 16 8 S 2.59 45.10 4.85 -107.50 -0.52 44.58 16 9 O -0.96 -18.29 13.65 -57.54 -0.79 -19.08 16 10 O -0.97 -19.15 16.32 -57.54 -0.94 -20.09 16 11 C -0.58 -10.92 5.86 37.16 0.22 -10.70 16 12 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 13 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 14 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 17 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 21 C 0.12 1.43 6.66 -3.61 -0.02 1.41 16 22 C 0.04 0.47 5.62 -3.70 -0.02 0.45 16 23 N -0.54 -5.52 4.73 -234.59 -1.11 -6.63 16 24 C 0.02 0.18 9.01 60.07 0.54 0.72 16 25 H 0.06 0.43 6.32 -51.93 -0.33 0.10 16 26 H 0.07 0.53 6.84 -51.93 -0.36 0.17 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.10 1.41 6.44 -51.93 -0.33 1.08 16 29 H 0.07 0.93 4.86 -51.93 -0.25 0.68 16 30 H 0.07 0.73 7.07 -51.93 -0.37 0.36 16 31 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 32 H 0.13 2.15 6.66 -51.92 -0.35 1.80 16 33 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 34 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.10 1.26 6.62 -51.93 -0.34 0.92 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.72 8.06 -51.93 -0.42 0.30 16 40 H 0.07 0.52 6.21 -51.92 -0.32 0.20 16 41 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 42 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -33.30 327.37 -9.06 -42.35 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.80 Total: -0.48 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 0.40 Total: -21.91 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.68 Total: -47.19 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.72 Total: -39.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 45.10 SS G_CDS: -0.52 Total: 44.58 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.30 -9.06 -42.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408084139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.930 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds