Wall clock time and date at job start Fri Apr 10 2020 17:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.51651 * 2 1 4 4 C 1.53241 * 109.49389 * 239.93414 * 2 1 3 5 5 H 1.09000 * 109.62800 * 305.91888 * 4 2 1 6 6 C 1.53000 * 109.62857 * 66.49824 * 4 2 1 7 7 N 1.47082 * 108.52194 * 186.20687 * 4 2 1 8 8 S 1.65597 * 120.88189 * 231.16403 * 7 4 2 9 9 O 1.42104 * 104.27828 * 39.58817 * 8 7 4 10 10 O 1.42093 * 104.27919 * 167.44779 * 8 7 4 11 11 C 1.81405 * 104.44814 * 283.51716 * 8 7 4 12 12 C 1.53002 * 109.46875 * 180.02562 * 11 8 7 13 13 C 1.50701 * 109.47089 * 180.02562 * 12 11 8 14 14 H 1.08003 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99963 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99914 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00370 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47044 * 90.00107 * 17 15 13 19 19 H 1.48500 * 109.47293 * 210.00335 * 17 15 13 20 20 H 1.48505 * 109.46897 * 330.00202 * 17 15 13 21 21 C 1.47075 * 118.23656 * 51.18598 * 7 4 2 22 22 C 1.53238 * 108.52357 * 308.81592 * 21 7 4 23 23 N 1.46896 * 109.49527 * 120.06752 * 2 1 3 24 24 C 1.46902 * 111.00356 * 307.21380 * 23 2 1 25 25 H 1.09000 * 109.46887 * 299.92730 * 1 2 3 26 26 H 1.08998 * 109.47242 * 59.93528 * 1 2 3 27 27 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47246 * 51.40817 * 6 4 2 29 29 H 1.08996 * 109.47775 * 171.40895 * 6 4 2 30 30 H 1.09005 * 109.46950 * 291.41448 * 6 4 2 31 31 H 1.08996 * 109.47250 * 299.99617 * 11 8 7 32 32 H 1.09001 * 109.47309 * 60.00037 * 11 8 7 33 33 H 1.09003 * 109.47251 * 299.99373 * 12 11 8 34 34 H 1.09001 * 109.47302 * 59.99812 * 12 11 8 35 35 H 0.96998 * 119.99847 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.63144 * 189.10095 * 21 7 4 37 37 H 1.09007 * 109.78959 * 68.62150 * 21 7 4 38 38 H 1.08998 * 109.49022 * 293.86998 * 22 21 7 39 39 H 1.08997 * 109.51764 * 173.80068 * 22 21 7 40 40 H 1.09008 * 109.46796 * 59.99909 * 24 23 2 41 41 H 1.08997 * 109.47170 * 179.97438 * 24 23 2 42 42 H 1.08996 * 109.46951 * 300.00243 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0414 -0.7237 -1.2502 5 1 1.5958 -1.7169 -1.3063 6 6 1.6711 0.0812 -2.4976 7 7 3.5043 -0.8431 -1.1554 8 16 4.4791 -0.3593 -2.4035 9 8 3.8725 0.8343 -2.8797 10 8 5.7847 -0.3442 -1.8429 11 6 4.3301 -1.6838 -3.6340 12 6 5.1962 -1.3499 -4.8502 13 6 5.0719 -2.4499 -5.8727 14 1 4.4388 -3.3022 -5.6747 15 6 5.7672 -2.3688 -7.0605 16 7 5.6583 -3.3286 -7.9531 17 14 6.8627 -0.8950 -7.4028 18 1 8.2345 -1.1720 -6.9061 19 1 6.9077 -0.6407 -8.8652 20 1 6.3168 0.2992 -6.7092 21 6 4.0782 -1.4040 0.0771 22 6 3.4867 -0.6536 1.2750 23 7 2.0202 -0.6938 1.1984 24 6 1.4141 -0.1359 2.4147 25 1 -0.3633 0.5127 0.8906 26 1 -0.3633 0.5148 -0.8894 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9952 1.1145 -2.3727 29 1 2.1636 -0.3512 -3.3685 30 1 0.5908 0.0540 -2.6401 31 1 4.6649 -2.6247 -3.1974 32 1 3.2890 -1.7769 -3.9433 33 1 4.8617 -0.4089 -5.2871 34 1 6.2371 -1.2570 -4.5406 35 1 6.1471 -3.2713 -8.7889 36 1 5.1611 -1.2805 0.0660 37 1 3.8314 -2.4632 0.1503 38 1 3.8235 0.3829 1.2573 39 1 3.8157 -1.1272 2.1999 40 1 0.3309 -0.2475 2.3648 41 1 1.7940 -0.6680 3.2869 42 1 1.6672 0.9212 2.4948 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408084139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:57 Heat of formation + Delta-G solvation = -79.517049 kcal Electronic energy + Delta-G solvation = -22856.874640 eV Core-core repulsion = 19577.600080 eV Total energy + Delta-G solvation = -3279.274560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50213 -38.43336 -37.08845 -36.02531 -35.92853 -34.38930 -33.49106 -29.69903 -29.25124 -27.89268 -26.91486 -24.07184 -23.14383 -22.92359 -21.19098 -19.94283 -19.21002 -18.14477 -17.76800 -17.10300 -16.66338 -16.42280 -16.21739 -15.99495 -15.43610 -15.30521 -15.14365 -14.83293 -14.16149 -13.94165 -13.82129 -13.68204 -13.41851 -13.26212 -13.13148 -13.08161 -13.00987 -12.93850 -12.63338 -12.42206 -12.22908 -12.17830 -11.95657 -11.88168 -11.77446 -11.71345 -11.35002 -11.23193 -10.85664 -10.03221 -9.27641 -8.37751 -6.43712 -0.76290 1.30803 1.32408 1.42637 1.63622 2.28309 2.74897 2.90457 2.95925 3.16230 3.46915 3.76689 3.91240 3.93230 4.07046 4.13728 4.24840 4.30730 4.45129 4.51097 4.54813 4.58513 4.68420 4.69181 4.72143 4.90136 4.94496 4.98969 5.00179 5.04580 5.07466 5.12305 5.14372 5.37411 5.44911 5.49719 5.63455 6.06396 6.13086 6.15681 6.62052 7.20694 8.77896 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.031739 B = 0.004426 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.996873 B = 6324.089239 C = 6564.712517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.031 0.969 4 C 0.158 3.842 5 H 0.097 0.903 6 C -0.189 4.189 7 N -0.998 5.998 8 S 2.611 3.389 9 O -0.977 6.977 10 O -0.992 6.992 11 C -0.590 4.590 12 C -0.014 4.014 13 C -0.528 4.528 14 H 0.049 0.951 15 C 0.015 3.985 16 N -0.939 5.939 17 Si 0.924 3.076 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.250 1.250 21 C 0.112 3.888 22 C 0.046 3.954 23 N -0.542 5.542 24 C 0.021 3.979 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.032 0.968 34 H 0.028 0.972 35 H 0.270 0.730 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.025 0.975 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 6.470 21.274 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 H 0.049 0.951 4 C 0.052 3.948 5 H 0.115 0.885 6 C -0.247 4.247 7 N -0.837 5.837 8 S 2.710 3.290 9 O -0.968 6.968 10 O -0.983 6.983 11 C -0.721 4.721 12 C -0.053 4.053 13 C -0.567 4.567 14 H 0.067 0.933 15 C -0.184 4.184 16 N -0.579 5.579 17 Si 0.747 3.253 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.174 1.174 21 C -0.013 4.013 22 C -0.084 4.084 23 N -0.267 5.267 24 C -0.126 4.126 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.043 0.957 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -10.095 6.734 21.066 24.312 hybrid contribution 0.747 0.505 -0.872 1.254 sum -9.348 7.239 20.195 23.401 Atomic orbital electron populations 1.21943 0.91579 1.03551 1.03184 1.21999 0.97176 0.94662 0.89675 0.95082 1.21310 0.77793 1.00491 0.95178 0.88492 1.22742 1.04311 1.02276 0.95419 1.57779 1.16665 1.80189 1.29105 1.04832 0.72665 0.76672 0.74858 1.93588 1.76248 1.44893 1.82037 1.93463 1.40039 1.87810 1.76973 1.30407 1.10159 1.18654 1.12844 1.19348 0.95175 0.97849 0.92939 1.21159 1.28401 1.05992 1.01134 0.93309 1.25860 0.97810 0.98952 0.95744 1.70007 1.43848 1.34886 1.09124 0.86037 0.80136 0.80664 0.78487 1.18514 1.19694 1.17395 1.21777 0.98598 0.99047 0.81909 1.22466 0.87882 0.98855 0.99165 1.61956 1.06227 1.55673 1.02849 1.22506 1.01252 0.97261 0.91594 0.91011 0.90861 0.90874 0.90097 0.93189 0.88081 0.84624 0.84338 0.94925 0.95354 0.92059 0.88727 0.88950 0.95674 0.87119 0.89632 0.90166 0.96088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.51 71.98 0.61 -1.39 16 2 C 0.08 1.46 2.06 45.00 0.09 1.55 16 3 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 4 C 0.16 3.55 3.12 44.96 0.14 3.69 16 5 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 6 C -0.19 -4.61 7.18 71.98 0.52 -4.09 16 7 N -1.00 -26.26 3.25 -489.91 -1.59 -27.85 16 8 S 2.61 89.58 4.85 -56.49 -0.27 89.31 16 9 O -0.98 -36.91 13.65 -127.65 -1.74 -38.65 16 10 O -0.99 -38.76 16.32 -127.65 -2.08 -40.85 16 11 C -0.59 -21.92 5.86 71.98 0.42 -21.50 16 12 C -0.01 -0.67 4.05 29.85 0.12 -0.55 16 13 C -0.53 -30.17 9.66 25.60 0.25 -29.93 16 14 H 0.05 2.98 7.99 -2.91 -0.02 2.95 16 15 C 0.02 0.88 5.47 84.65 0.46 1.34 16 16 N -0.94 -57.97 13.96 21.45 0.30 -57.67 16 17 Si 0.92 44.11 27.47 68.60 1.88 46.00 16 18 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 21 C 0.11 2.46 6.66 86.35 0.57 3.04 16 22 C 0.05 0.86 5.62 86.38 0.49 1.35 16 23 N -0.54 -9.67 4.73 -896.10 -4.24 -13.91 16 24 C 0.02 0.28 9.01 127.69 1.15 1.43 16 25 H 0.07 0.82 6.32 -2.39 -0.02 0.81 16 26 H 0.07 0.93 6.84 -2.39 -0.02 0.92 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.08 2.28 6.44 -2.38 -0.02 2.26 16 29 H 0.05 1.37 4.86 -2.39 -0.01 1.36 16 30 H 0.10 1.82 7.07 -2.38 -0.02 1.81 16 31 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 32 H 0.14 4.71 6.66 -2.39 -0.02 4.69 16 33 H 0.03 1.54 7.20 -2.39 -0.02 1.52 16 34 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.09 2.24 6.62 -2.39 -0.02 2.22 16 37 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.11 1.52 8.06 -2.39 -0.02 1.50 16 40 H 0.09 0.92 6.21 -2.38 -0.01 0.90 16 41 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 42 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -71.90 327.37 -1.98 -73.88 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.94 Total: 14.81 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 4.83 Total: -45.06 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -5.53 Total: -99.44 kcal Atomic # 8 Polarization: -75.67 SS G_CDS: -3.83 Total: -79.49 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: 89.58 SS G_CDS: -0.27 Total: 89.31 kcal Total: -71.90 -1.98 -73.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408084139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.642 kcal (2) G-P(sol) polarization free energy of solvation -71.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds