Wall clock time and date at job start Fri Apr 10 2020 17:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.49265 * 2 1 4 4 C 1.53244 * 109.51541 * 239.93062 * 2 1 3 5 5 H 1.08996 * 109.62489 * 66.48669 * 4 2 1 6 6 C 1.53001 * 109.62851 * 305.90892 * 4 2 1 7 7 N 1.47078 * 108.51987 * 186.19544 * 4 2 1 8 8 S 1.65594 * 120.88140 * 231.20742 * 7 4 2 9 9 O 1.42108 * 104.27783 * 206.07242 * 8 7 4 10 10 O 1.42098 * 104.28034 * 333.92697 * 8 7 4 11 11 C 1.81395 * 104.44992 * 90.00345 * 8 7 4 12 12 C 1.53007 * 109.47325 * 179.97438 * 11 8 7 13 13 C 1.50697 * 109.47283 * 179.97438 * 12 11 8 14 14 H 1.07997 * 119.99851 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99965 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99690 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46845 * 60.00471 * 17 15 13 19 19 H 1.48501 * 109.46883 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47324 * 300.00707 * 17 15 13 21 21 C 1.47084 * 118.23662 * 51.18994 * 7 4 2 22 22 C 1.53235 * 108.51980 * 308.81121 * 21 7 4 23 23 N 1.46898 * 109.49127 * 120.05453 * 2 1 3 24 24 C 1.46902 * 111.00211 * 307.23884 * 23 2 1 25 25 H 1.08999 * 109.47030 * 299.94813 * 1 2 3 26 26 H 1.09003 * 109.47307 * 59.94584 * 1 2 3 27 27 H 1.09005 * 109.47070 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47015 * 59.99925 * 6 4 2 29 29 H 1.08996 * 109.46708 * 179.97438 * 6 4 2 30 30 H 1.08998 * 109.46930 * 299.99508 * 6 4 2 31 31 H 1.08996 * 109.47150 * 300.00080 * 11 8 7 32 32 H 1.09000 * 109.47424 * 60.00237 * 11 8 7 33 33 H 1.09000 * 109.46813 * 300.00356 * 12 11 8 34 34 H 1.09000 * 109.46467 * 59.99906 * 12 11 8 35 35 H 0.97006 * 119.99347 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.63034 * 189.10440 * 21 7 4 37 37 H 1.09001 * 109.63284 * 68.52077 * 21 7 4 38 38 H 1.08997 * 109.49554 * 293.87465 * 22 21 7 39 39 H 1.08997 * 109.49382 * 173.79065 * 22 21 7 40 40 H 1.08999 * 109.47201 * 291.74952 * 24 23 2 41 41 H 1.09005 * 109.46702 * 51.74114 * 24 23 2 42 42 H 1.09001 * 109.47499 * 171.74678 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0274 0.0000 4 6 2.0419 -0.7237 -1.2500 5 1 1.7781 -0.1505 -2.1387 6 6 1.4170 -2.1180 -1.3288 7 7 3.5048 -0.8425 -1.1548 8 16 4.4799 -0.3575 -2.4023 9 8 5.6547 -1.1433 -2.2547 10 8 3.6588 -0.4770 -3.5559 11 6 4.8322 1.3866 -2.0496 12 6 5.7368 1.9557 -3.1446 13 6 6.0290 3.4048 -2.8519 14 1 5.6117 3.8729 -1.9727 15 6 6.8300 4.1327 -3.7061 16 7 7.3386 3.5625 -4.7765 17 14 7.1917 5.9292 -3.3437 18 1 7.8738 6.0414 -2.0293 19 1 8.0697 6.4815 -4.4064 20 1 5.9186 6.6929 -3.3074 21 6 4.0787 -1.4032 0.0779 22 6 3.4866 -0.6528 1.2756 23 7 2.0201 -0.6935 1.1986 24 6 1.4135 -0.1358 2.4147 25 1 -0.3633 0.5130 0.8904 26 1 -0.3634 0.5147 -0.8895 27 1 -0.3633 -1.0277 -0.0005 28 1 0.3321 -2.0274 -1.3818 29 1 1.7824 -2.6302 -2.2188 30 1 1.6910 -2.6896 -0.4420 31 1 3.8981 1.9475 -2.0215 32 1 5.3342 1.4682 -1.0855 33 1 6.6709 1.3947 -3.1722 34 1 5.2353 1.8741 -4.1089 35 1 7.9018 4.0747 -5.3776 36 1 5.1615 -1.2792 0.0671 37 1 3.8293 -2.4619 0.1495 38 1 3.8230 0.3838 1.2578 39 1 3.8156 -1.1266 2.2004 40 1 1.7833 0.8772 2.5735 41 1 0.3294 -0.1133 2.3024 42 1 1.6774 -0.7572 3.2704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408084140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:00 Heat of formation + Delta-G solvation = -66.776390 kcal Electronic energy + Delta-G solvation = -22799.055892 eV Core-core repulsion = 19520.333808 eV Total energy + Delta-G solvation = -3278.722083 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.68224 -36.66275 -35.47413 -34.94650 -33.89580 -33.37128 -31.16746 -28.58960 -28.51843 -26.28524 -25.58857 -22.98805 -22.70009 -21.57057 -19.43335 -18.27282 -17.62829 -16.57844 -16.30155 -15.72041 -15.39097 -15.31033 -14.80011 -14.73796 -14.54348 -13.79848 -13.53638 -13.32554 -12.95167 -12.58985 -12.52291 -12.34828 -12.10705 -11.91377 -11.76739 -11.62181 -11.60269 -11.55637 -11.42447 -11.08260 -11.01879 -10.97986 -10.87449 -10.57185 -10.39042 -10.37835 -9.75905 -9.35583 -8.86169 -8.51334 -8.38034 -6.13457 -4.19270 0.75623 3.00266 3.25717 3.30644 3.32398 3.70928 4.29360 4.37577 4.50515 4.52657 4.76901 4.88851 5.01159 5.09956 5.20462 5.21516 5.29633 5.32791 5.36783 5.44255 5.49328 5.57327 5.59946 5.64531 5.67989 5.76055 5.83132 5.91038 5.98478 6.01874 6.23169 6.39929 6.47593 6.70751 6.89548 6.90588 7.28545 7.34946 7.79003 8.16450 8.83703 9.45422 10.97544 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.004746 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.527856 B = 5898.430739 C = 6455.629091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.069 3.931 3 H 0.048 0.952 4 C 0.158 3.842 5 H 0.099 0.901 6 C -0.152 4.152 7 N -1.005 6.005 8 S 2.589 3.411 9 O -0.963 6.963 10 O -0.962 6.962 11 C -0.590 4.590 12 C 0.029 3.971 13 C -0.521 4.521 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.128 3.872 22 C 0.039 3.961 23 N -0.532 5.532 24 C 0.019 3.981 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.266 0.734 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.024 0.976 41 H 0.074 0.926 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.103 -8.683 13.506 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.040 4.040 3 H 0.066 0.934 4 C 0.052 3.948 5 H 0.117 0.883 6 C -0.211 4.211 7 N -0.840 5.840 8 S 2.689 3.311 9 O -0.954 6.954 10 O -0.953 6.953 11 C -0.723 4.723 12 C -0.010 4.010 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.201 1.201 21 C 0.002 3.998 22 C -0.090 4.090 23 N -0.258 5.258 24 C -0.129 4.129 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.043 0.957 41 H 0.092 0.908 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.835 -9.744 12.578 20.442 hybrid contribution 0.454 2.484 0.711 2.623 sum -12.381 -7.261 13.289 19.560 Atomic orbital electron populations 1.22033 0.93733 1.03092 1.02123 1.22033 0.95676 0.95748 0.90592 0.93403 1.20992 0.78878 0.97790 0.97145 0.88335 1.22035 1.00234 0.96283 1.02541 1.58183 1.15691 1.77768 1.32409 1.05738 0.73447 0.78574 0.73374 1.93534 1.48741 1.67502 1.85609 1.93532 1.67884 1.86938 1.46928 1.30512 1.10278 1.20705 1.10822 1.18951 0.93353 0.97785 0.90908 1.20953 1.31136 0.94509 1.09460 0.92206 1.25062 0.95560 0.98851 0.94931 1.69948 1.32967 1.36932 1.12961 0.86533 0.78354 0.84350 0.78046 1.20096 1.21010 1.20100 1.21417 0.97839 0.98221 0.82351 1.22534 0.87630 0.99764 0.99090 1.61900 1.06407 1.55385 1.02060 1.22476 1.00465 0.97661 0.92310 0.92175 0.91674 0.91000 0.91691 0.92590 0.91177 0.86522 0.86493 0.94890 0.94886 0.92448 0.88843 0.90598 0.94072 0.89681 0.95718 0.90751 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.23 37.16 0.31 -0.97 16 2 C 0.07 0.74 2.31 -67.59 -0.16 0.58 16 3 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.16 1.99 2.69 -67.49 -0.18 1.81 16 5 H 0.10 1.29 7.19 -51.93 -0.37 0.92 16 6 C -0.15 -1.72 8.69 37.16 0.32 -1.40 16 7 N -1.00 -14.26 2.96 -106.20 -0.31 -14.58 16 8 S 2.59 47.90 5.41 -107.50 -0.58 47.32 16 9 O -0.96 -20.25 16.79 -57.54 -0.97 -21.22 16 10 O -0.96 -20.23 16.79 -57.54 -0.97 -21.20 16 11 C -0.59 -11.52 6.12 37.16 0.23 -11.29 16 12 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 13 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 17 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.13 1.53 6.06 -3.60 -0.02 1.51 16 22 C 0.04 0.40 5.62 -3.70 -0.02 0.38 16 23 N -0.53 -5.31 4.23 -234.58 -0.99 -6.31 16 24 C 0.02 0.15 9.27 60.07 0.56 0.71 16 25 H 0.06 0.44 6.14 -51.93 -0.32 0.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.58 6.35 -51.93 -0.33 0.25 16 28 H 0.06 0.61 6.36 -51.93 -0.33 0.28 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.78 7.06 -51.93 -0.37 0.41 16 31 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 32 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 33 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.09 1.13 7.19 -51.93 -0.37 0.76 16 37 H 0.08 0.85 7.60 -51.93 -0.39 0.46 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 40 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.07 0.53 5.72 -51.93 -0.30 0.24 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -33.85 338.07 -9.50 -43.35 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.97 Total: -1.55 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 0.48 Total: -21.30 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.57 Total: -46.72 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.93 Total: -42.42 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 47.90 SS G_CDS: -0.58 Total: 47.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.85 -9.50 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408084140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.426 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds