Wall clock time and date at job start Fri Apr 10 2020 17:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.78236 * 2 1 4 4 C 1.53236 * 109.62707 * 239.51941 * 2 1 3 5 5 H 1.09003 * 109.49311 * 174.15700 * 4 2 1 6 6 C 1.52998 * 109.49782 * 54.07542 * 4 2 1 7 7 N 1.46899 * 109.33981 * 294.11719 * 4 2 1 8 8 C 1.46898 * 111.00181 * 172.74871 * 7 4 2 9 9 C 1.46905 * 111.27123 * 296.89504 * 7 4 2 10 10 C 1.52786 * 109.41786 * 62.96348 * 9 7 4 11 11 N 1.47074 * 109.62966 * 120.48657 * 2 1 3 12 12 S 1.65599 * 120.88375 * 248.52576 * 11 2 1 13 13 O 1.42106 * 104.27393 * 333.93344 * 12 11 2 14 14 O 1.42100 * 104.28186 * 206.07344 * 12 11 2 15 15 C 1.81399 * 104.44810 * 90.00089 * 12 11 2 16 16 C 1.52998 * 109.47111 * 180.02562 * 15 12 11 17 17 C 1.50706 * 109.47348 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 H 1.09004 * 109.47444 * 299.50679 * 1 2 3 26 26 H 1.08991 * 109.47388 * 59.51276 * 1 2 3 27 27 H 1.09004 * 109.47226 * 179.51527 * 1 2 3 28 28 H 1.09010 * 109.46747 * 59.99689 * 6 4 2 29 29 H 1.08993 * 109.47557 * 179.97438 * 6 4 2 30 30 H 1.08999 * 109.47169 * 300.00372 * 6 4 2 31 31 H 1.09002 * 109.47570 * 60.00122 * 8 7 4 32 32 H 1.08998 * 109.47258 * 180.02562 * 8 7 4 33 33 H 1.08994 * 109.47317 * 299.99890 * 8 7 4 34 34 H 1.08991 * 109.49659 * 183.06196 * 9 7 4 35 35 H 1.08999 * 109.49201 * 303.15023 * 9 7 4 36 36 H 1.09004 * 109.55441 * 186.61473 * 10 9 7 37 37 H 1.08997 * 109.46082 * 66.18178 * 10 9 7 38 38 H 1.09000 * 109.47241 * 60.00442 * 15 12 11 39 39 H 1.09002 * 109.47106 * 299.99999 * 15 12 11 40 40 H 1.09001 * 109.47671 * 60.00243 * 16 15 12 41 41 H 1.09006 * 109.47297 * 299.99963 * 16 15 12 42 42 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0447 -0.7321 -1.2439 5 1 3.1297 -0.6416 -1.2963 6 6 1.4192 -0.1138 -2.4958 7 7 1.6747 -2.1513 -1.1610 8 6 1.9978 -2.8535 -2.4102 9 6 2.3148 -2.8027 -0.0103 10 6 1.8165 -2.1563 1.2813 11 7 2.0241 -0.7028 1.1938 12 16 2.7997 0.1194 2.4040 13 8 3.3565 1.2546 1.7554 14 8 3.6320 -0.8576 3.0139 15 6 1.4720 0.6196 3.5343 16 6 2.0683 1.3979 4.7089 17 6 0.9654 1.8130 5.6482 18 1 -0.0586 1.5485 5.4291 19 6 1.2635 2.5303 6.7873 20 7 2.5103 2.8528 7.0538 21 14 -0.1038 3.0454 7.9512 22 1 0.4752 3.7996 9.0919 23 1 -1.0716 3.9080 7.2271 24 1 -0.8016 1.8375 8.4604 25 1 -0.3634 0.5062 0.8944 26 1 -0.3634 0.5213 -0.8855 27 1 -0.3634 -1.0277 -0.0087 28 1 1.6920 0.9399 -2.5556 29 1 1.7859 -0.6345 -3.3803 30 1 0.3344 -0.2057 -2.4432 31 1 3.0687 -2.7821 -2.6006 32 1 1.7132 -3.9019 -2.3217 33 1 1.4509 -2.3974 -3.2353 34 1 2.0650 -3.8636 -0.0075 35 1 3.3960 -2.6833 -0.0798 36 1 2.3748 -2.5555 2.1281 37 1 0.7546 -2.3675 1.4069 38 1 0.9597 -0.2669 3.9081 39 1 0.7615 1.2527 3.0027 40 1 2.5803 2.2845 4.3348 41 1 2.7790 0.7652 5.2406 42 1 3.2202 2.5857 6.4492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408084142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:04 Heat of formation + Delta-G solvation = -71.858517 kcal Electronic energy + Delta-G solvation = -22718.648442 eV Core-core repulsion = 19439.705981 eV Total energy + Delta-G solvation = -3278.942461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.73035 -36.78150 -35.57117 -35.03696 -34.24799 -33.42052 -31.01927 -28.63046 -28.60795 -26.30507 -25.05682 -23.05332 -22.76279 -21.81048 -19.62181 -18.28449 -17.76308 -16.78583 -16.38762 -15.90394 -15.59737 -15.32907 -14.92333 -14.78129 -13.89165 -13.78196 -13.65301 -13.38620 -13.03319 -12.83573 -12.59088 -12.43515 -12.21525 -12.06753 -12.01595 -11.72197 -11.68807 -11.66300 -11.49787 -11.05494 -11.02108 -10.91229 -10.58346 -10.51277 -10.48662 -10.29739 -10.05924 -9.12717 -8.65632 -8.45785 -8.41458 -6.47298 -4.20009 0.65893 2.90017 3.39152 3.41052 3.60205 3.66664 4.22097 4.42516 4.45849 4.48097 4.74508 4.83998 4.98576 5.05552 5.15610 5.26519 5.28205 5.29363 5.30160 5.38391 5.43083 5.52592 5.54742 5.58302 5.64850 5.68320 5.75831 5.83816 5.91522 5.96983 6.15910 6.32110 6.38168 6.64242 6.84876 6.86182 6.96777 7.07013 7.96822 8.30159 8.72929 9.52381 10.92494 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.030620 B = 0.004105 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.215228 B = 6820.052044 C = 7036.372756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.153 3.847 3 H 0.103 0.897 4 C 0.076 3.924 5 H 0.046 0.954 6 C -0.151 4.151 7 N -0.534 5.534 8 C 0.022 3.978 9 C 0.045 3.955 10 C 0.121 3.879 11 N -1.004 6.004 12 S 2.588 3.412 13 O -0.965 6.965 14 O -0.965 6.965 15 C -0.581 4.581 16 C 0.015 3.985 17 C -0.600 4.600 18 H 0.055 0.945 19 C 0.016 3.984 20 N -0.906 5.906 21 Si 1.073 2.927 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 -10.596 -19.012 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 H 0.121 0.879 4 C -0.034 4.034 5 H 0.064 0.936 6 C -0.209 4.209 7 N -0.259 5.259 8 C -0.126 4.126 9 C -0.084 4.084 10 C -0.004 4.004 11 N -0.840 5.840 12 S 2.688 3.312 13 O -0.955 6.955 14 O -0.956 6.956 15 C -0.714 4.714 16 C -0.024 4.024 17 C -0.639 4.639 18 H 0.073 0.927 19 C -0.189 4.189 20 N -0.541 5.541 21 Si 0.901 3.099 22 H -0.205 1.205 23 H -0.213 1.213 24 H -0.213 1.213 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.983 -9.685 -17.492 20.388 hybrid contribution 0.533 -0.880 -1.464 1.789 sum -3.450 -10.566 -18.956 21.974 Atomic orbital electron populations 1.22149 0.94441 1.03380 1.01896 1.21076 0.95045 0.95986 0.83234 0.87876 1.21930 0.97876 0.88196 0.95391 0.93625 1.22008 1.02157 1.00680 0.96014 1.61913 1.58938 1.01943 1.03081 1.22427 0.98819 0.99060 0.92304 1.22344 0.96905 0.98495 0.90668 1.21405 1.01898 0.79180 0.97949 1.58081 1.76457 1.16152 1.33287 1.05717 0.77015 0.73871 0.74624 1.93525 1.76307 1.52213 1.73502 1.93525 1.64616 1.59978 1.77434 1.30377 1.16802 1.10707 1.13531 1.19073 0.97774 0.94424 0.91151 1.21841 0.93579 1.39723 1.08740 0.92664 1.25977 1.01055 0.94039 0.97807 1.70786 0.99994 1.43939 1.39354 0.83483 0.74067 0.76492 0.75896 1.20546 1.21269 1.21280 0.92526 0.91502 0.90885 0.91693 0.92283 0.90947 0.95847 0.91467 0.90851 0.89611 0.94338 0.88440 0.90742 0.86104 0.86125 0.95853 0.95862 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.66 37.16 0.32 -1.39 16 2 C 0.15 1.92 2.85 -67.50 -0.19 1.73 16 3 H 0.10 1.39 6.87 -51.93 -0.36 1.03 16 4 C 0.08 0.84 2.31 -67.59 -0.16 0.68 16 5 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 6 C -0.15 -1.27 8.20 37.16 0.30 -0.97 16 7 N -0.53 -5.39 4.22 -234.88 -0.99 -6.38 16 8 C 0.02 0.18 9.01 60.06 0.54 0.72 16 9 C 0.05 0.48 5.60 -3.93 -0.02 0.46 16 10 C 0.12 1.46 6.20 -3.83 -0.02 1.43 16 11 N -1.00 -14.22 2.96 -106.46 -0.32 -14.54 16 12 S 2.59 47.62 5.47 -107.50 -0.59 47.03 16 13 O -0.97 -20.16 16.61 -57.54 -0.96 -21.12 16 14 O -0.97 -20.07 16.60 -57.54 -0.95 -21.03 16 15 C -0.58 -11.44 6.12 37.16 0.23 -11.21 16 16 C 0.01 0.38 4.29 -27.88 -0.12 0.26 16 17 C -0.60 -16.94 9.11 -34.44 -0.31 -17.25 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 20 N -0.91 -27.85 13.65 55.43 0.76 -27.09 16 21 Si 1.07 24.94 29.90 -169.99 -5.08 19.86 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.60 6.42 -51.93 -0.33 0.27 16 27 H 0.07 0.78 7.09 -51.93 -0.37 0.41 16 28 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.06 0.43 6.33 -51.93 -0.33 0.11 16 30 H 0.07 0.58 6.38 -51.93 -0.33 0.25 16 31 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.07 0.51 6.21 -51.93 -0.32 0.19 16 34 H 0.09 0.72 8.06 -51.93 -0.42 0.31 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 1.21 6.86 -51.93 -0.36 0.86 16 37 H 0.07 0.78 7.65 -51.93 -0.40 0.38 16 38 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 39 H 0.12 2.18 8.14 -51.92 -0.42 1.75 16 40 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16 41 H 0.02 0.62 8.01 -51.93 -0.42 0.21 16 42 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -34.69 336.45 -9.51 -44.20 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.92 Total: -0.82 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 0.47 Total: -25.18 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.55 Total: -48.01 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.91 Total: -42.15 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Atomic # 16 Polarization: 47.62 SS G_CDS: -0.59 Total: 47.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.69 -9.51 -44.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408084142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.657 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds