Wall clock time and date at job start Fri Apr 10 2020 17:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48499 * 109.47102 * 269.99618 * 3 2 1 5 5 H 1.48497 * 109.47386 * 29.99709 * 3 2 1 6 6 H 1.48498 * 109.47233 * 149.99880 * 3 2 1 7 7 C 1.37878 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99803 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00004 * 180.02562 * 7 2 1 10 10 N 1.46508 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.34956 * 125.97286 * 124.99709 * 10 9 7 12 12 C 1.35246 * 107.85520 * 179.75018 * 11 10 9 13 13 C 1.40401 * 107.86751 * 0.43423 * 12 11 10 14 14 N 1.40198 * 125.97216 * 179.82932 * 13 12 11 15 15 C 1.34773 * 120.00073 * 359.71210 * 14 13 12 16 16 O 1.21591 * 119.99985 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00214 * 180.02562 * 15 14 13 18 18 C 1.47859 * 126.92537 * 359.97111 * 17 15 14 19 19 C 1.56012 * 105.11467 * 181.96030 * 18 17 15 20 20 H 1.09003 * 116.91187 * 159.22758 * 19 18 17 21 21 C 1.57080 * 99.59918 * 32.80633 * 19 18 17 22 22 C 1.49277 * 126.92858 * 179.97438 * 17 15 14 23 23 H 1.09002 * 116.75676 * 16.44417 * 22 17 15 24 24 C 1.56007 * 104.13030 * 246.86489 * 22 17 15 25 25 N 1.48284 * 105.07222 * 288.80015 * 24 22 17 26 26 N 1.31202 * 108.05531 * 359.56111 * 13 12 11 27 27 H 0.97002 * 120.00575 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47481 * 60.00134 * 9 7 2 29 29 H 1.08995 * 109.47506 * 299.99634 * 9 7 2 30 30 H 1.08005 * 126.07623 * 0.02891 * 11 10 9 31 31 H 1.08009 * 126.06615 * 180.25863 * 12 11 10 32 32 H 0.96998 * 119.99770 * 179.71662 * 14 13 12 33 33 H 1.09004 * 110.31771 * 63.04741 * 18 17 15 34 34 H 1.09004 * 110.39793 * 300.91538 * 18 17 15 35 35 H 1.09001 * 112.36158 * 191.75055 * 21 19 18 36 36 H 1.08998 * 112.35978 * 64.33365 * 21 19 18 37 37 H 1.09007 * 110.31683 * 47.69811 * 24 22 17 38 38 H 1.09003 * 110.32179 * 169.79749 * 24 22 17 39 39 H 1.00896 * 111.00070 * 241.31656 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.8551 -3.1144 -0.8918 12 6 5.0604 -4.4049 -0.5431 13 6 4.2937 -4.6686 0.6031 14 7 4.2221 -5.8931 1.2822 15 6 4.9275 -6.9522 0.8382 16 8 5.6256 -6.8459 -0.1516 17 7 4.8582 -8.1294 1.4907 18 6 4.0637 -8.4287 2.7013 19 6 4.3961 -9.9127 3.0494 20 1 4.2050 -10.2340 4.0733 21 6 5.8890 -9.9676 2.5641 22 6 5.5683 -9.3940 1.1371 23 1 6.4081 -9.3088 0.4475 24 6 4.4249 -10.3673 0.7139 25 7 3.7162 -10.7003 1.9732 26 7 3.6604 -3.5673 0.9310 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8752 -0.6804 -0.8888 30 1 5.3004 -2.6046 -1.7334 31 1 5.6985 -5.1086 -1.0570 32 1 3.6648 -5.9779 2.0716 33 1 2.9996 -8.3182 2.4924 34 1 4.3579 -7.7727 3.5206 35 1 6.2749 -10.9862 2.5242 36 1 6.5369 -9.3073 3.1406 37 1 3.7470 -9.8745 0.0169 38 1 4.8418 -11.2677 0.2628 39 1 3.7639 -11.6898 2.1641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601562370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:36 Heat of formation + Delta-G solvation = 105.221539 kcal Electronic energy + Delta-G solvation = -22762.393354 eV Core-core repulsion = 19322.552549 eV Total energy + Delta-G solvation = -3439.840805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26003 -40.44185 -38.73854 -34.71269 -33.79850 -33.07900 -31.17946 -30.07524 -29.49974 -29.18455 -27.07215 -25.53055 -22.99668 -22.02518 -21.20090 -20.67175 -19.89008 -19.09265 -18.25538 -17.05299 -16.80779 -16.40039 -16.19776 -15.60390 -15.09825 -14.78165 -14.50981 -14.06108 -13.61784 -13.29577 -13.03212 -12.84727 -12.59877 -12.49228 -12.32956 -12.21847 -12.05406 -11.90372 -11.78458 -11.57593 -11.13568 -10.75504 -10.61750 -10.07449 -9.97057 -9.72771 -9.49074 -9.04872 -8.77200 -8.73835 -8.12697 -7.43207 -6.20879 -4.22953 2.21258 2.62181 3.07222 3.16969 3.23604 3.24709 3.36733 3.57768 3.80246 4.03412 4.09418 4.20928 4.25306 4.41673 4.55307 4.97169 5.00090 5.06976 5.16178 5.28156 5.37578 5.39389 5.45048 5.51643 5.68908 5.74128 5.85128 6.18121 6.26731 6.40667 6.50132 6.63882 6.74501 6.86372 7.02781 7.31010 7.47304 7.85426 7.89629 8.36973 8.58667 8.63606 8.89566 9.34180 10.91898 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.034749 B = 0.003060 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.594816 B = 9148.281334 C = 9556.114648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.233 3.767 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.279 3.721 14 N -0.640 5.640 15 C 0.735 3.265 16 O -0.568 6.568 17 N -0.635 5.635 18 C 0.105 3.895 19 C 0.057 3.943 20 H 0.131 0.869 21 C -0.175 4.175 22 C 0.136 3.864 23 H 0.129 0.871 24 C 0.028 3.972 25 N -0.669 5.669 26 N -0.300 5.300 27 H 0.268 0.732 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.407 0.593 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.233 -20.789 5.755 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.114 3.886 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.314 4.314 13 C 0.025 3.975 14 N -0.290 5.290 15 C 0.437 3.563 16 O -0.444 6.444 17 N -0.375 5.375 18 C -0.018 4.018 19 C -0.053 4.053 20 H 0.149 0.851 21 C -0.214 4.214 22 C 0.031 3.969 23 H 0.147 0.853 24 C -0.103 4.103 25 N -0.297 5.297 26 N -0.131 5.131 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.242 0.758 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.115 -19.366 5.686 23.042 hybrid contribution 1.261 0.089 -0.062 1.265 sum 12.376 -19.278 5.624 23.589 Atomic orbital electron populations 1.69871 1.06162 1.27264 1.49259 1.24834 0.94864 0.98785 0.94295 0.86905 0.80441 0.83840 0.78906 1.19719 1.20566 1.18858 1.21124 0.87839 0.95709 1.52524 0.89638 1.20030 0.97413 0.73063 0.98135 1.48587 1.32686 1.10225 1.18766 1.22540 0.95945 0.94677 0.96691 1.21529 1.11345 0.96756 1.01745 1.18796 0.98579 0.85826 0.94319 1.41373 1.48985 1.07219 1.31432 1.15076 0.80299 0.78640 0.82292 1.90858 1.44506 1.82419 1.26592 1.48168 1.49870 1.09147 1.30294 1.22523 0.96686 0.95439 0.87195 1.24441 0.91221 0.93262 0.96354 0.85117 1.24598 0.98145 1.01899 0.96797 1.23894 0.94943 0.81405 0.96635 0.85324 1.23610 0.95147 0.98464 0.93032 1.63203 1.53216 1.11369 1.01960 1.77387 1.24004 0.95569 1.16107 0.92205 0.94092 0.93346 0.81420 0.82055 0.75804 0.90006 0.91042 0.89566 0.89484 0.89553 0.91577 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 20.32 27.47 -169.99 -4.67 15.65 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 7 C -0.53 -15.29 9.79 -34.44 -0.34 -15.62 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 C 0.23 5.61 5.33 -5.19 -0.03 5.58 16 10 N -0.32 -7.45 3.67 -62.56 -0.23 -7.68 16 11 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 12 C -0.28 -5.73 9.61 -39.83 -0.38 -6.11 16 13 C 0.28 5.83 8.11 -154.37 -1.25 4.58 16 14 N -0.64 -10.80 5.42 -15.51 -0.08 -10.89 16 15 C 0.74 11.74 8.51 -86.92 -0.74 11.00 16 16 O -0.57 -10.70 13.83 5.29 0.07 -10.63 16 17 N -0.64 -7.37 2.95 -162.43 -0.48 -7.85 16 18 C 0.10 0.91 5.69 -1.68 -0.01 0.90 16 19 C 0.06 0.35 5.79 -62.33 -0.36 -0.01 16 20 H 0.13 0.50 8.14 -51.93 -0.42 0.07 16 21 C -0.17 -1.06 6.81 -22.29 -0.15 -1.21 16 22 C 0.14 1.22 5.22 -62.55 -0.33 0.89 16 23 H 0.13 1.20 8.08 -51.93 -0.42 0.78 16 24 C 0.03 0.22 6.97 -1.45 -0.01 0.21 16 25 N -0.67 -4.72 7.17 -98.03 -0.70 -5.43 16 26 N -0.30 -7.08 12.42 31.44 0.39 -6.69 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 29 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 30 H 0.17 2.63 8.06 -52.48 -0.42 2.21 16 31 H 0.16 3.21 5.91 -52.48 -0.31 2.90 16 32 H 0.41 5.89 7.90 -40.82 -0.32 5.57 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.34 1.68 8.93 -39.29 -0.35 1.33 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -35.14 323.28 -9.09 -44.23 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.14 Total: 7.44 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -3.89 Total: 3.08 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -0.33 Total: -64.64 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.07 Total: -10.63 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.14 -9.09 -44.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601562370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.447 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds