Wall clock time and date at job start Fri Apr 10 2020 17:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48499 * 109.47102 * 269.99618 * 3 2 1 5 5 H 1.48497 * 109.47386 * 29.99709 * 3 2 1 6 6 H 1.48498 * 109.47233 * 149.99880 * 3 2 1 7 7 C 1.37878 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99803 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00004 * 180.02562 * 7 2 1 10 10 N 1.46508 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.34956 * 125.97286 * 124.99709 * 10 9 7 12 12 C 1.35246 * 107.85520 * 179.75018 * 11 10 9 13 13 C 1.40401 * 107.86751 * 0.43423 * 12 11 10 14 14 N 1.40198 * 125.97216 * 179.82932 * 13 12 11 15 15 C 1.34773 * 120.00073 * 359.71210 * 14 13 12 16 16 O 1.21591 * 119.99985 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00214 * 180.02562 * 15 14 13 18 18 C 1.47859 * 126.92537 * 359.97111 * 17 15 14 19 19 C 1.56012 * 105.11467 * 181.96030 * 18 17 15 20 20 H 1.09003 * 116.91187 * 159.22758 * 19 18 17 21 21 C 1.57080 * 99.59918 * 32.80633 * 19 18 17 22 22 C 1.49277 * 126.92858 * 179.97438 * 17 15 14 23 23 H 1.09002 * 116.75676 * 16.44417 * 22 17 15 24 24 C 1.56007 * 104.13030 * 246.86489 * 22 17 15 25 25 N 1.48284 * 105.07222 * 288.80015 * 24 22 17 26 26 N 1.31202 * 108.05531 * 359.56111 * 13 12 11 27 27 H 0.97002 * 120.00575 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47481 * 60.00134 * 9 7 2 29 29 H 1.08995 * 109.47506 * 299.99634 * 9 7 2 30 30 H 1.08005 * 126.07623 * 0.02891 * 11 10 9 31 31 H 1.08009 * 126.06615 * 180.25863 * 12 11 10 32 32 H 0.96998 * 119.99770 * 179.71662 * 14 13 12 33 33 H 1.09004 * 110.31771 * 63.04741 * 18 17 15 34 34 H 1.09004 * 110.39793 * 300.91538 * 18 17 15 35 35 H 1.09001 * 112.36158 * 191.75055 * 21 19 18 36 36 H 1.08998 * 112.35978 * 64.33365 * 21 19 18 37 37 H 1.09007 * 110.31683 * 47.69811 * 24 22 17 38 38 H 1.09003 * 110.32179 * 169.79749 * 24 22 17 39 39 H 1.00896 * 111.00070 * 241.31656 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.8551 -3.1144 -0.8918 12 6 5.0604 -4.4049 -0.5431 13 6 4.2937 -4.6686 0.6031 14 7 4.2221 -5.8931 1.2822 15 6 4.9275 -6.9522 0.8382 16 8 5.6256 -6.8459 -0.1516 17 7 4.8582 -8.1294 1.4907 18 6 4.0637 -8.4287 2.7013 19 6 4.3961 -9.9127 3.0494 20 1 4.2050 -10.2340 4.0733 21 6 5.8890 -9.9676 2.5641 22 6 5.5683 -9.3940 1.1371 23 1 6.4081 -9.3088 0.4475 24 6 4.4249 -10.3673 0.7139 25 7 3.7162 -10.7003 1.9732 26 7 3.6604 -3.5673 0.9310 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8752 -0.6804 -0.8888 30 1 5.3004 -2.6046 -1.7334 31 1 5.6985 -5.1086 -1.0570 32 1 3.6648 -5.9779 2.0716 33 1 2.9996 -8.3182 2.4924 34 1 4.3579 -7.7727 3.5206 35 1 6.2749 -10.9862 2.5242 36 1 6.5369 -9.3073 3.1406 37 1 3.7470 -9.8745 0.0169 38 1 4.8418 -11.2677 0.2628 39 1 3.7639 -11.6898 2.1641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601562370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:35 Heat of formation + Delta-G solvation = 78.175503 kcal Electronic energy + Delta-G solvation = -22763.566158 eV Core-core repulsion = 19322.552549 eV Total energy + Delta-G solvation = -3441.013609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.37608 -41.74089 -39.93137 -36.23432 -35.29382 -34.50140 -32.95333 -31.01500 -30.73418 -30.08721 -28.86248 -26.37769 -24.66987 -23.36516 -22.20363 -21.74258 -21.31261 -20.17622 -19.27029 -19.10143 -18.17713 -17.44248 -17.30768 -16.86538 -16.43757 -16.18640 -15.75451 -15.39729 -15.07239 -14.82602 -14.39260 -14.03480 -13.87592 -13.78962 -13.58664 -13.18507 -13.00249 -12.90115 -12.53522 -12.47033 -12.39502 -12.32811 -12.20429 -11.83432 -11.64668 -11.49319 -11.14705 -10.86935 -9.89198 -9.71603 -9.51542 -9.03862 -8.37426 -6.47966 0.97984 1.05464 1.36766 1.40082 1.49913 1.64889 1.95788 2.29297 2.34498 2.79639 2.95128 3.06262 3.46534 3.48362 3.81739 3.90544 3.98409 4.18094 4.32140 4.42596 4.51886 4.59723 4.62623 4.74771 4.80566 4.84110 4.88721 4.91267 4.91658 5.02177 5.06117 5.24164 5.30704 5.60734 5.80056 5.89985 6.00853 6.40811 6.47893 6.56201 6.62258 7.05141 7.15082 7.32970 8.79880 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.034749 B = 0.003060 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.594816 B = 9148.281334 C = 9556.114648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.548 4.548 8 H 0.024 0.976 9 C 0.240 3.760 10 N -0.344 5.344 11 C 0.063 3.937 12 C -0.294 4.294 13 C 0.283 3.717 14 N -0.638 5.638 15 C 0.729 3.271 16 O -0.602 6.602 17 N -0.630 5.630 18 C 0.093 3.907 19 C 0.072 3.928 20 H 0.165 0.835 21 C -0.157 4.157 22 C 0.118 3.882 23 H 0.121 0.879 24 C 0.034 3.966 25 N -0.680 5.680 26 N -0.350 5.350 27 H 0.272 0.728 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.213 0.787 31 H 0.166 0.834 32 H 0.415 0.585 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.557 -21.278 6.423 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.586 4.586 8 H 0.043 0.957 9 C 0.120 3.880 10 N -0.126 5.126 11 C -0.085 4.085 12 C -0.325 4.325 13 C 0.027 3.973 14 N -0.289 5.289 15 C 0.430 3.570 16 O -0.481 6.481 17 N -0.368 5.368 18 C -0.030 4.030 19 C -0.038 4.038 20 H 0.182 0.818 21 C -0.196 4.196 22 C 0.015 3.985 23 H 0.139 0.861 24 C -0.096 4.096 25 N -0.310 5.310 26 N -0.181 5.181 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.230 0.770 31 H 0.183 0.817 32 H 0.252 0.748 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 13.448 -19.953 6.391 24.896 hybrid contribution 0.469 0.018 -0.259 0.536 sum 13.917 -19.935 6.132 25.074 Atomic orbital electron populations 1.70051 1.08622 1.28838 1.50662 1.25944 0.95784 1.03605 0.93158 0.85590 0.79485 0.77037 0.80101 1.17679 1.20594 1.16188 1.21241 0.90567 0.93721 1.53117 0.95720 1.19897 0.94115 0.74276 0.99699 1.48509 1.34125 1.10082 1.19923 1.23243 0.94192 0.94506 0.96532 1.21711 1.11719 0.97270 1.01845 1.19148 0.97371 0.86366 0.94416 1.41430 1.49399 1.06461 1.31577 1.15280 0.79948 0.79418 0.82325 1.90809 1.45879 1.83220 1.28144 1.48296 1.49655 1.08332 1.30499 1.22812 0.95630 0.98214 0.86300 1.24573 0.90920 0.90782 0.97507 0.81802 1.24551 0.98093 1.03035 0.93966 1.24223 0.95091 0.80258 0.98938 0.86106 1.23443 0.94085 0.98863 0.93236 1.63085 1.53458 1.12734 1.01748 1.77302 1.26116 0.96767 1.17879 0.91857 0.93601 0.89911 0.77037 0.81652 0.74808 0.91276 0.89702 0.86861 0.89544 0.92984 0.89103 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 2 C 0.01 0.79 5.47 84.66 0.46 1.25 16 3 Si 0.96 41.18 27.47 68.60 1.88 43.07 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 7 C -0.55 -32.33 9.79 25.60 0.25 -32.08 16 8 H 0.02 1.70 8.06 -2.91 -0.02 1.68 16 9 C 0.24 11.36 5.33 85.63 0.46 11.81 16 10 N -0.34 -16.02 3.67 -351.83 -1.29 -17.31 16 11 C 0.06 2.45 11.44 83.52 0.96 3.40 16 12 C -0.29 -11.98 9.61 22.11 0.21 -11.77 16 13 C 0.28 12.13 8.11 133.31 1.08 13.21 16 14 N -0.64 -22.22 5.42 -321.24 -1.74 -23.97 16 15 C 0.73 23.83 8.51 179.06 1.52 25.35 16 16 O -0.60 -23.24 13.83 -4.00 -0.06 -23.29 16 17 N -0.63 -14.53 2.95 -786.07 -2.32 -16.85 16 18 C 0.09 1.52 5.69 87.16 0.50 2.02 16 19 C 0.07 0.66 5.79 46.85 0.27 0.93 16 20 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 21 C -0.16 -1.43 6.81 33.47 0.23 -1.20 16 22 C 0.12 2.00 5.22 46.94 0.25 2.25 16 23 H 0.12 2.22 8.08 -2.39 -0.02 2.20 16 24 C 0.03 0.52 6.97 87.08 0.61 1.12 16 25 N -0.68 -8.08 7.17 -464.05 -3.33 -11.40 16 26 N -0.35 -17.06 12.42 -54.44 -0.68 -17.74 16 27 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.05 2.12 7.20 -2.39 -0.02 2.10 16 29 H 0.08 3.35 7.50 -2.39 -0.02 3.33 16 30 H 0.21 5.98 8.06 -2.91 -0.02 5.96 16 31 H 0.17 6.62 5.91 -2.91 -0.02 6.60 16 32 H 0.42 12.53 7.90 -92.71 -0.73 11.80 16 33 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.35 2.40 8.93 -89.70 -0.80 1.60 16 Total: -1.00 -81.68 323.28 -0.93 -82.61 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.49 Total: 27.18 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 6.79 Total: 16.30 kcal Atomic # 7 Polarization: -136.81 SS G_CDS: -9.05 Total: -145.86 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.06 Total: -23.29 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.88 Total: 43.07 kcal Total: -81.68 -0.93 -82.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601562370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.781 kcal (2) G-P(sol) polarization free energy of solvation -81.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds