Wall clock time and date at job start Fri Apr 10 2020 17:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00028 * 2 1 4 4 C 1.52994 * 109.47233 * 184.78487 * 3 2 1 5 5 H 1.09003 * 109.87598 * 175.70742 * 4 3 2 6 6 C 1.54326 * 109.88455 * 54.69515 * 4 3 2 7 7 C 1.55156 * 102.94498 * 218.38955 * 6 4 3 8 8 C 1.54914 * 101.58104 * 35.49953 * 7 6 4 9 9 N 1.47021 * 109.88504 * 296.72261 * 4 3 2 10 10 S 1.65594 * 125.64960 * 298.31902 * 9 4 3 11 11 O 1.42099 * 106.40052 * 209.59706 * 10 9 4 12 12 O 1.42101 * 106.40000 * 342.51673 * 10 9 4 13 13 N 1.65602 * 107.22105 * 96.05439 * 10 9 4 14 14 C 1.46503 * 120.00029 * 263.72326 * 13 10 9 15 15 C 1.46501 * 119.99943 * 83.72081 * 13 10 9 16 16 C 1.50696 * 109.47283 * 95.00192 * 15 13 10 17 17 H 1.08003 * 119.99664 * 359.97438 * 16 15 13 18 18 C 1.37876 * 120.00195 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00244 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99898 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47362 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47262 * 119.99859 * 20 18 16 23 23 H 1.48495 * 109.47415 * 239.99878 * 20 18 16 24 24 H 1.09001 * 109.47174 * 65.70411 * 1 2 3 25 25 H 1.08997 * 109.47122 * 185.70382 * 1 2 3 26 26 H 1.09003 * 109.47144 * 305.70472 * 1 2 3 27 27 H 1.09000 * 109.47513 * 64.78078 * 3 2 1 28 28 H 1.09007 * 109.46947 * 304.78437 * 3 2 1 29 29 H 1.09007 * 110.71970 * 336.75195 * 6 4 3 30 30 H 1.09002 * 110.72351 * 99.84808 * 6 4 3 31 31 H 1.09000 * 111.00619 * 153.57339 * 7 6 4 32 32 H 1.08994 * 111.00266 * 277.42758 * 7 6 4 33 33 H 1.09000 * 110.36884 * 81.82437 * 8 7 6 34 34 H 1.09000 * 110.36790 * 204.04850 * 8 7 6 35 35 H 1.09002 * 109.46805 * 93.77318 * 14 13 10 36 36 H 1.08996 * 109.46789 * 213.77307 * 14 13 10 37 37 H 1.08996 * 109.46773 * 333.77265 * 14 13 10 38 38 H 1.08997 * 109.47433 * 215.00418 * 15 13 10 39 39 H 1.08997 * 109.46963 * 335.00119 * 15 13 10 40 40 H 0.96996 * 120.00492 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5308 1.1867 -0.1203 5 1 3.9751 2.1791 -0.1975 6 6 3.8952 0.3505 -1.3651 7 6 5.1087 -0.4854 -0.8793 8 6 4.7284 -0.7563 0.5978 9 7 4.0722 0.4866 1.0536 10 16 3.9632 1.0058 2.6223 11 8 5.1111 0.5030 3.2921 12 8 3.6398 2.3884 2.5657 13 7 2.6564 0.2473 3.3001 14 6 1.3604 0.9284 3.3534 15 6 2.7964 -1.1048 3.8465 16 6 3.0629 -1.0231 5.3274 17 1 3.1226 -0.0602 5.8130 18 6 3.2317 -2.1775 6.0622 19 7 3.1596 -3.3499 5.4708 20 14 3.5628 -2.0761 7.8978 21 1 3.5953 -0.6518 8.3171 22 1 2.4855 -2.7841 8.6350 23 1 4.8702 -2.7118 8.2009 24 1 -0.3633 0.4228 -0.9366 25 1 -0.3633 -1.0225 0.1021 26 1 -0.3633 0.5998 0.8345 27 1 1.7581 1.8156 0.9297 28 1 1.6224 1.8759 -0.8441 29 1 3.0676 -0.2999 -1.6485 30 1 4.1770 0.9977 -2.1957 31 1 5.1905 -1.4172 -1.4389 32 1 6.0316 0.0907 -0.9458 33 1 4.0381 -1.5973 0.6637 34 1 5.6223 -0.9527 1.1898 35 1 0.7669 0.6486 2.4830 36 1 0.8336 0.6362 4.2617 37 1 1.5168 2.0071 3.3551 38 1 1.8769 -1.6637 3.6731 39 1 3.6273 -1.6109 3.3551 40 1 3.2787 -4.1620 5.9877 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610590303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:43 Heat of formation + Delta-G solvation = -113.634479 kcal Electronic energy + Delta-G solvation = -23774.266226 eV Core-core repulsion = 20330.367650 eV Total energy + Delta-G solvation = -3443.898576 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.00895 -36.96033 -36.53772 -35.38927 -35.09469 -32.38443 -30.74103 -30.48347 -27.74120 -26.64171 -25.12334 -24.64922 -22.26600 -21.68795 -20.88792 -18.30113 -17.43370 -16.76440 -16.47058 -16.24754 -15.79192 -15.56327 -15.24811 -14.63109 -14.28941 -13.78286 -13.37049 -13.12492 -13.04479 -12.92815 -12.66112 -12.21045 -12.13867 -12.10637 -11.58063 -11.48862 -11.42522 -11.12856 -11.09138 -11.05362 -10.99976 -10.69763 -10.65146 -10.60111 -10.46027 -9.98276 -9.69017 -9.54277 -8.71112 -8.40194 -7.95559 -6.02162 -4.05648 1.25287 3.33269 3.40761 3.46249 3.55422 3.80579 4.15286 4.47911 4.62685 4.67043 4.88115 5.15367 5.20505 5.25957 5.32322 5.36375 5.40161 5.41688 5.56768 5.69158 5.72497 5.78411 5.86379 5.94972 6.00341 6.09928 6.13801 6.27477 6.37556 6.49929 6.56173 6.76477 7.21765 7.30962 7.47827 7.68413 7.95934 8.26108 8.97093 9.59148 11.06288 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.006005 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.942147 B = 4661.368903 C = 4894.057941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.036 3.964 4 C 0.157 3.843 5 H 0.087 0.913 6 C -0.121 4.121 7 C -0.127 4.127 8 C 0.121 3.879 9 N -1.012 6.012 10 S 2.793 3.207 11 O -0.961 6.961 12 O -0.999 6.999 13 N -0.990 5.990 14 C 0.096 3.904 15 C 0.262 3.738 16 C -0.526 4.526 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.282 1.282 24 H 0.035 0.965 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 6.669 -15.517 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C -0.042 4.042 4 C 0.050 3.950 5 H 0.105 0.895 6 C -0.159 4.159 7 C -0.166 4.166 8 C -0.004 4.004 9 N -0.850 5.850 10 S 2.803 3.197 11 O -0.945 6.945 12 O -0.984 6.984 13 N -0.832 5.832 14 C -0.051 4.051 15 C 0.140 3.860 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 H 0.054 0.946 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.456 6.946 -14.936 16.654 hybrid contribution -0.442 -0.125 0.924 1.032 sum -2.898 6.820 -14.012 15.851 Atomic orbital electron populations 1.22763 0.81534 1.02869 0.99491 1.87976 1.19075 1.26697 1.95231 1.23117 0.94349 0.85655 1.01093 1.21305 0.90791 0.96545 0.86392 0.89506 1.22607 0.98941 0.98674 0.95707 1.22723 0.97888 1.00336 0.95618 1.22015 0.97184 0.86505 0.94714 1.59401 1.69834 1.33194 1.22612 1.01561 0.73868 0.72597 0.71646 1.93621 1.48447 1.81060 1.71351 1.93492 1.85520 1.32344 1.87049 1.57574 1.23484 1.29799 1.72379 1.21382 0.85651 0.96202 1.01819 1.18966 0.97708 0.75744 0.93550 1.21555 1.48628 0.92937 0.93392 0.92215 1.24924 0.95126 0.95193 0.98819 1.69930 1.50244 0.97336 1.36021 0.86472 0.77875 0.78225 0.85046 1.19692 1.21025 1.20818 0.94609 0.89627 0.93897 0.92539 0.92355 0.89550 0.90869 0.90244 0.91051 0.91110 0.90229 0.94256 0.90690 0.91826 0.94818 0.94882 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.63 101.05 1.07 1.40 16 2 O -0.37 -5.09 9.30 -35.23 -0.33 -5.42 16 3 C 0.04 0.46 5.53 37.15 0.21 0.67 16 4 C 0.16 2.09 3.18 -66.96 -0.21 1.87 16 5 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 6 C -0.12 -1.27 6.37 -24.90 -0.16 -1.43 16 7 C -0.13 -1.41 7.09 -24.58 -0.17 -1.58 16 8 C 0.12 1.84 7.16 -2.34 -0.02 1.83 16 9 N -1.01 -16.99 3.40 -104.17 -0.35 -17.34 16 10 S 2.79 58.99 5.82 -107.50 -0.63 58.36 16 11 O -0.96 -24.12 16.79 -57.17 -0.96 -25.08 16 12 O -1.00 -21.24 15.49 -57.17 -0.89 -22.13 16 13 N -0.99 -21.51 3.23 -123.06 -0.40 -21.91 16 14 C 0.10 1.74 9.65 59.85 0.58 2.32 16 15 C 0.26 6.74 5.09 -5.19 -0.03 6.72 16 16 C -0.53 -15.07 9.38 -34.44 -0.32 -15.39 16 17 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 19 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 20 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.46 6.82 -51.93 -0.35 0.10 16 27 H 0.06 0.80 5.62 -51.93 -0.29 0.51 16 28 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.09 0.94 7.03 -51.93 -0.36 0.57 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.29 7.84 -51.93 -0.41 0.88 16 35 H 0.04 0.62 5.55 -51.93 -0.29 0.33 16 36 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 37 H 0.06 1.09 6.90 -51.93 -0.36 0.73 16 38 H 0.03 0.89 8.11 -51.93 -0.42 0.46 16 39 H 0.03 0.90 7.78 -51.93 -0.40 0.50 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 332.70 15.07 5.01 5.01 Total: -1.00 -34.00 332.70 -8.21 -42.21 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.24 Total: -3.29 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 0.85 Total: -1.93 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: -0.01 Total: -64.91 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -2.17 Total: -52.62 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 58.99 SS G_CDS: -0.63 Total: 58.36 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.00 -8.21 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610590303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.425 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds