Wall clock time and date at job start Fri Apr 10 2020 17:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00028 * 2 1 4 4 C 1.52994 * 109.47233 * 184.78487 * 3 2 1 5 5 H 1.09003 * 109.87598 * 175.70742 * 4 3 2 6 6 C 1.54326 * 109.88455 * 54.69515 * 4 3 2 7 7 C 1.55156 * 102.94498 * 218.38955 * 6 4 3 8 8 C 1.54914 * 101.58104 * 35.49953 * 7 6 4 9 9 N 1.47021 * 109.88504 * 296.72261 * 4 3 2 10 10 S 1.65594 * 125.64960 * 298.31902 * 9 4 3 11 11 O 1.42099 * 106.40052 * 209.59706 * 10 9 4 12 12 O 1.42101 * 106.40000 * 342.51673 * 10 9 4 13 13 N 1.65602 * 107.22105 * 96.05439 * 10 9 4 14 14 C 1.46503 * 120.00029 * 263.72326 * 13 10 9 15 15 C 1.46501 * 119.99943 * 83.72081 * 13 10 9 16 16 C 1.50696 * 109.47283 * 95.00192 * 15 13 10 17 17 H 1.08003 * 119.99664 * 359.97438 * 16 15 13 18 18 C 1.37876 * 120.00195 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00244 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99898 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47362 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47262 * 119.99859 * 20 18 16 23 23 H 1.48495 * 109.47415 * 239.99878 * 20 18 16 24 24 H 1.09001 * 109.47174 * 65.70411 * 1 2 3 25 25 H 1.08997 * 109.47122 * 185.70382 * 1 2 3 26 26 H 1.09003 * 109.47144 * 305.70472 * 1 2 3 27 27 H 1.09000 * 109.47513 * 64.78078 * 3 2 1 28 28 H 1.09007 * 109.46947 * 304.78437 * 3 2 1 29 29 H 1.09007 * 110.71970 * 336.75195 * 6 4 3 30 30 H 1.09002 * 110.72351 * 99.84808 * 6 4 3 31 31 H 1.09000 * 111.00619 * 153.57339 * 7 6 4 32 32 H 1.08994 * 111.00266 * 277.42758 * 7 6 4 33 33 H 1.09000 * 110.36884 * 81.82437 * 8 7 6 34 34 H 1.09000 * 110.36790 * 204.04850 * 8 7 6 35 35 H 1.09002 * 109.46805 * 93.77318 * 14 13 10 36 36 H 1.08996 * 109.46789 * 213.77307 * 14 13 10 37 37 H 1.08996 * 109.46773 * 333.77265 * 14 13 10 38 38 H 1.08997 * 109.47433 * 215.00418 * 15 13 10 39 39 H 1.08997 * 109.46963 * 335.00119 * 15 13 10 40 40 H 0.96996 * 120.00492 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5308 1.1867 -0.1203 5 1 3.9751 2.1791 -0.1975 6 6 3.8952 0.3505 -1.3651 7 6 5.1087 -0.4854 -0.8793 8 6 4.7284 -0.7563 0.5978 9 7 4.0722 0.4866 1.0536 10 16 3.9632 1.0058 2.6223 11 8 5.1111 0.5030 3.2921 12 8 3.6398 2.3884 2.5657 13 7 2.6564 0.2473 3.3001 14 6 1.3604 0.9284 3.3534 15 6 2.7964 -1.1048 3.8465 16 6 3.0629 -1.0231 5.3274 17 1 3.1226 -0.0602 5.8130 18 6 3.2317 -2.1775 6.0622 19 7 3.1596 -3.3499 5.4708 20 14 3.5628 -2.0761 7.8978 21 1 3.5953 -0.6518 8.3171 22 1 2.4855 -2.7841 8.6350 23 1 4.8702 -2.7118 8.2009 24 1 -0.3633 0.4228 -0.9366 25 1 -0.3633 -1.0225 0.1021 26 1 -0.3633 0.5998 0.8345 27 1 1.7581 1.8156 0.9297 28 1 1.6224 1.8759 -0.8441 29 1 3.0676 -0.2999 -1.6485 30 1 4.1770 0.9977 -2.1957 31 1 5.1905 -1.4172 -1.4389 32 1 6.0316 0.0907 -0.9458 33 1 4.0381 -1.5973 0.6637 34 1 5.6223 -0.9527 1.1898 35 1 0.7669 0.6486 2.4830 36 1 0.8336 0.6362 4.2617 37 1 1.5168 2.0071 3.3551 38 1 1.8769 -1.6637 3.6731 39 1 3.6273 -1.6109 3.3551 40 1 3.2787 -4.1620 5.9877 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610590303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:43 Heat of formation + Delta-G solvation = -139.349007 kcal Electronic energy + Delta-G solvation = -23775.381291 eV Core-core repulsion = 20330.367650 eV Total energy + Delta-G solvation = -3445.013641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.05718 -38.37732 -37.90148 -37.19575 -36.88607 -34.51723 -31.82079 -31.55768 -29.70467 -27.56176 -26.84770 -25.73378 -24.22401 -22.88798 -21.91058 -19.76792 -19.05337 -18.53024 -18.21583 -17.56691 -17.13765 -16.77025 -16.53259 -16.27774 -15.61122 -15.25914 -15.02213 -14.60100 -14.31651 -14.04506 -14.00092 -13.87440 -13.60861 -13.40858 -13.19631 -13.08224 -13.02574 -12.95797 -12.57924 -12.50080 -12.41160 -12.34090 -11.99433 -11.99124 -11.73738 -11.63074 -11.48524 -10.61756 -10.49473 -10.00719 -9.75491 -8.21311 -6.33529 -0.38062 1.36646 1.39199 1.51055 2.00177 2.38660 2.54953 2.90603 3.08756 3.28203 3.60183 3.87266 4.01316 4.10917 4.24155 4.34501 4.38456 4.45745 4.55306 4.60961 4.66835 4.72134 4.76945 4.92299 4.93749 5.02340 5.04981 5.07315 5.12147 5.17396 5.22723 5.40003 5.52403 5.54958 5.69450 5.94340 6.09648 6.31316 6.74517 7.35141 8.86342 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.006005 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.942147 B = 4661.368903 C = 4894.057941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.033 3.967 4 C 0.141 3.859 5 H 0.099 0.901 6 C -0.108 4.108 7 C -0.116 4.116 8 C 0.111 3.889 9 N -1.010 6.010 10 S 2.804 3.196 11 O -1.010 7.010 12 O -1.004 7.004 13 N -0.998 5.998 14 C 0.093 3.907 15 C 0.282 3.718 16 C -0.549 4.549 17 H 0.049 0.951 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.957 3.043 21 H -0.272 1.272 22 H -0.268 1.268 23 H -0.278 1.278 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.023 0.977 39 H 0.010 0.990 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 7.379 -17.077 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.045 4.045 4 C 0.035 3.965 5 H 0.116 0.884 6 C -0.147 4.147 7 C -0.155 4.155 8 C -0.014 4.014 9 N -0.851 5.851 10 S 2.815 3.185 11 O -0.994 6.994 12 O -0.988 6.988 13 N -0.839 5.839 14 C -0.052 4.052 15 C 0.158 3.842 16 C -0.588 4.588 17 H 0.068 0.932 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.782 3.218 21 H -0.196 1.196 22 H -0.193 1.193 23 H -0.204 1.204 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.028 0.972 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.987 7.679 -16.497 18.440 hybrid contribution -0.314 -0.327 1.313 1.389 sum -3.301 7.352 -15.184 17.190 Atomic orbital electron populations 1.22902 0.80288 1.03151 1.00809 1.87948 1.20563 1.27310 1.95418 1.23174 0.94019 0.85638 1.01636 1.21772 0.91379 0.97340 0.85973 0.88354 1.22610 0.98408 0.98553 0.95105 1.22730 0.98681 1.01816 0.92234 1.22183 0.96008 0.85634 0.97581 1.59044 1.69998 1.34023 1.22029 1.00908 0.72957 0.72280 0.72344 1.93553 1.50558 1.81792 1.73470 1.93471 1.85398 1.32434 1.87508 1.57488 1.24969 1.28344 1.73147 1.21548 0.84434 0.96488 1.02739 1.18468 0.96028 0.77474 0.92188 1.21850 1.49208 0.92725 0.95021 0.93248 1.25746 0.94740 0.94857 1.03361 1.70016 1.50536 0.97936 1.37757 0.85522 0.78204 0.78302 0.79757 1.19604 1.19286 1.20362 0.92081 0.89679 0.94004 0.94368 0.88909 0.89547 0.87409 0.88048 0.89899 0.92322 0.92207 0.91755 0.91263 0.90753 0.95877 0.97210 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.63 113.37 1.20 1.69 16 2 O -0.39 -10.10 9.30 -148.98 -1.38 -11.49 16 3 C 0.03 0.78 5.53 71.98 0.40 1.18 16 4 C 0.14 3.45 3.18 45.34 0.14 3.59 16 5 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 6 C -0.11 -1.91 6.37 31.78 0.20 -1.71 16 7 C -0.12 -2.29 7.09 31.99 0.23 -2.06 16 8 C 0.11 3.40 7.16 86.79 0.62 4.02 16 9 N -1.01 -33.64 3.40 -483.49 -1.64 -35.29 16 10 S 2.80 120.70 5.82 -56.49 -0.33 120.37 16 11 O -1.01 -52.73 16.79 -128.00 -2.15 -54.88 16 12 O -1.00 -42.56 15.49 -128.00 -1.98 -44.54 16 13 N -1.00 -44.37 3.23 -543.24 -1.75 -46.12 16 14 C 0.09 3.39 9.65 127.77 1.23 4.62 16 15 C 0.28 15.03 5.09 85.63 0.44 15.47 16 16 C -0.55 -32.28 9.38 25.60 0.24 -32.04 16 17 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 18 C 0.01 0.72 5.46 84.65 0.46 1.19 16 19 N -0.92 -55.15 13.29 21.45 0.28 -54.87 16 20 Si 0.96 45.74 29.54 68.60 2.03 47.76 16 21 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 26 H 0.04 0.82 6.82 -2.39 -0.02 0.80 16 27 H 0.04 1.03 5.62 -2.39 -0.01 1.01 16 28 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.09 1.58 7.03 -2.38 -0.02 1.56 16 30 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16 35 H 0.06 1.99 5.55 -2.39 -0.01 1.97 16 36 H 0.07 2.56 8.10 -2.39 -0.02 2.54 16 37 H 0.07 2.52 6.90 -2.39 -0.02 2.50 16 38 H 0.02 1.26 8.11 -2.39 -0.02 1.24 16 39 H 0.01 0.57 7.78 -2.39 -0.02 0.55 16 40 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -74.54 332.70 -0.74 -75.28 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.02 Total: 7.82 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 5.17 Total: -4.05 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -3.11 Total: -136.27 kcal Atomic # 8 Polarization: -105.39 SS G_CDS: -5.52 Total: -110.91 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: 120.70 SS G_CDS: -0.33 Total: 120.37 kcal Total: -74.54 -0.74 -75.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610590303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.071 kcal (2) G-P(sol) polarization free energy of solvation -74.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds