Wall clock time and date at job start Fri Apr 10 2020 17:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99896 * 2 1 4 4 C 1.50696 * 109.47263 * 276.26799 * 3 2 1 5 5 H 1.07997 * 120.00086 * 355.04591 * 4 3 2 6 6 C 1.37873 * 119.99877 * 175.04006 * 4 3 2 7 7 N 1.31513 * 120.00236 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99931 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47082 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47278 * 120.00345 * 8 6 4 11 11 H 1.48503 * 109.46989 * 239.99922 * 8 6 4 12 12 S 1.65597 * 119.99687 * 180.02562 * 2 1 3 13 13 O 1.42091 * 106.40627 * 18.25317 * 12 2 1 14 14 O 1.42103 * 106.39964 * 151.17437 * 12 2 1 15 15 N 1.65600 * 107.21985 * 264.70779 * 12 2 1 16 16 C 1.46502 * 119.99786 * 64.20768 * 15 12 2 17 17 H 1.09003 * 109.47182 * 23.15892 * 16 15 12 18 18 C 1.52997 * 109.47321 * 263.15847 * 16 15 12 19 19 O 1.42904 * 109.46791 * 295.82115 * 18 16 15 20 20 C 1.52996 * 109.47121 * 143.15412 * 16 15 12 21 21 C 1.53001 * 109.47530 * 295.00052 * 20 16 15 22 22 C 1.52995 * 117.50112 * 243.74861 * 21 20 16 23 23 C 1.53002 * 117.50209 * 175.08417 * 21 20 16 24 24 H 1.08991 * 109.47548 * 269.99876 * 1 2 3 25 25 H 1.08997 * 109.47061 * 29.99992 * 1 2 3 26 26 H 1.09007 * 109.47301 * 149.99923 * 1 2 3 27 27 H 1.09000 * 109.46985 * 36.27189 * 3 2 1 28 28 H 1.09011 * 109.46757 * 156.27054 * 3 2 1 29 29 H 0.96998 * 119.99958 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00646 * 244.20794 * 15 12 2 31 31 H 1.08995 * 109.47526 * 55.82488 * 18 16 15 32 32 H 1.09008 * 109.47182 * 175.82198 * 18 16 15 33 33 H 0.96704 * 113.99435 * 179.97438 * 19 18 16 34 34 H 1.08997 * 109.47155 * 55.00234 * 20 16 15 35 35 H 1.09007 * 109.47059 * 175.00465 * 20 16 15 36 36 H 1.09004 * 115.54884 * 29.41691 * 21 20 16 37 37 H 1.09004 * 117.49985 * 359.97438 * 22 21 20 38 38 H 1.09005 * 117.49696 * 145.01706 * 22 21 20 39 39 H 1.08992 * 117.49770 * 214.97747 * 23 21 20 40 40 H 1.08996 * 117.49662 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3143 1.7813 -1.4123 5 1 1.9571 1.1810 -2.2359 6 6 2.8771 3.0168 -1.6529 7 7 3.3125 3.7476 -0.6499 8 14 3.0213 3.6525 -3.4034 9 1 2.4625 2.6472 -4.3428 10 1 2.2658 4.9245 -3.5319 11 1 4.4508 3.8910 -3.7273 12 16 2.2929 -1.4342 -0.0006 13 8 1.3725 -2.4287 -0.4280 14 8 3.5278 -1.1842 -0.6578 15 7 2.6644 -1.7865 1.5742 16 6 1.5930 -2.0469 2.5389 17 1 0.6971 -2.3699 2.0085 18 6 1.2891 -0.7678 3.3213 19 8 2.4336 -0.3984 4.0932 20 6 2.0352 -3.1449 3.5082 21 6 2.2189 -4.4571 2.7432 22 6 1.2975 -5.6227 3.1084 23 6 2.7722 -5.6550 3.5177 24 1 -0.3634 0.0000 1.0275 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6616 1.9976 0.6080 28 1 3.1940 1.1129 0.4136 29 1 3.7087 4.6166 -0.8192 30 1 3.5912 -1.8204 1.8581 31 1 1.0457 0.0348 2.6252 32 1 0.4429 -0.9410 3.9863 33 1 2.3125 0.4062 4.6158 34 1 2.9790 -2.8604 3.9733 35 1 1.2756 -3.2769 4.2788 36 1 2.5112 -4.3551 1.6981 37 1 0.5607 -5.4548 3.8940 38 1 0.9840 -6.2876 2.3035 39 1 3.4281 -6.3411 2.9821 40 1 3.0058 -5.5081 4.5722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611109884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:33:50 Heat of formation + Delta-G solvation = -106.924436 kcal Electronic energy + Delta-G solvation = -22909.783876 eV Core-core repulsion = 19466.176270 eV Total energy + Delta-G solvation = -3443.607606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.52082 -36.79653 -36.54252 -35.47854 -35.13412 -34.52593 -32.43035 -29.76270 -27.78524 -26.69563 -25.05974 -22.46856 -22.27940 -21.49820 -20.45800 -19.05600 -17.59589 -16.94893 -16.76015 -16.36248 -16.00761 -15.47531 -15.04643 -14.67968 -14.41964 -14.10552 -13.58487 -13.37883 -13.30840 -12.86574 -12.35017 -12.19281 -12.14001 -11.68343 -11.59890 -11.53169 -11.42102 -11.37076 -11.15884 -11.06994 -11.03110 -10.70649 -10.50733 -10.34037 -10.03634 -9.99727 -9.79906 -9.73056 -9.21752 -8.45239 -8.06179 -6.06504 -4.10050 1.27815 3.30902 3.38763 3.44132 3.53430 3.74662 4.14824 4.31219 4.44900 4.50193 4.80056 4.88387 5.03691 5.06534 5.17866 5.28907 5.33188 5.39464 5.48872 5.54669 5.61184 5.69043 5.76551 5.89047 5.90532 6.01186 6.03495 6.26034 6.31325 6.39931 6.56221 7.17685 7.30994 7.45753 7.61981 7.68890 7.91471 8.21392 8.93258 9.55153 11.01983 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.026051 B = 0.004736 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.560781 B = 5910.693602 C = 6331.949271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.997 5.997 3 C 0.260 3.740 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.780 3.220 13 O -1.000 7.000 14 O -0.966 6.966 15 N -1.119 6.119 16 C 0.160 3.840 17 H 0.100 0.900 18 C 0.054 3.946 19 O -0.564 6.564 20 C -0.084 4.084 21 C -0.151 4.151 22 C -0.182 4.182 23 C -0.183 4.183 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.262 0.738 30 H 0.415 0.585 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.378 0.622 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 -12.013 11.867 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.840 5.840 3 C 0.138 3.862 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.787 3.213 13 O -0.983 6.983 14 O -0.950 6.950 15 N -0.878 5.878 16 C 0.051 3.949 17 H 0.117 0.883 18 C -0.026 4.026 19 O -0.369 6.369 20 C -0.123 4.123 21 C -0.170 4.170 22 C -0.219 4.219 23 C -0.220 4.220 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.249 0.751 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.224 0.776 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.396 -12.903 10.797 17.669 hybrid contribution 0.147 1.287 -0.224 1.315 sum -5.249 -11.616 10.573 16.561 Atomic orbital electron populations 1.21366 0.80327 1.03583 0.99997 1.57620 1.14152 1.23373 1.88829 1.19011 0.90847 0.78787 0.97598 1.21547 1.39799 1.02253 0.92967 0.92127 1.24933 0.95162 0.96573 0.97425 1.69928 1.40939 1.12114 1.30608 0.86464 0.77912 0.78562 0.84638 1.19641 1.21006 1.20823 1.01957 0.73339 0.72999 0.72961 1.93522 1.65534 1.58695 1.80558 1.93641 1.44489 1.85258 1.71616 1.56162 1.15088 1.87331 1.29195 1.20768 0.90694 0.93250 0.90138 0.88264 1.22850 0.87919 0.97482 0.94339 1.86450 1.38756 1.48110 1.63576 1.21321 1.02734 0.91667 0.96591 1.22391 1.04310 0.89762 1.00491 1.23042 0.93169 1.02280 1.03418 1.22953 0.96666 1.01711 1.00707 0.94570 0.90323 0.91520 0.94622 0.94787 0.92790 0.75107 0.92055 0.93272 0.77558 0.89979 0.91042 0.87417 0.88931 0.88962 0.89045 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.54 59.85 0.63 2.19 16 2 N -1.00 -20.17 2.84 -123.05 -0.35 -20.52 16 3 C 0.26 6.40 5.09 -5.20 -0.03 6.38 16 4 C -0.53 -14.75 9.37 -34.44 -0.32 -15.07 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 S 2.78 54.59 6.04 -107.50 -0.65 53.94 16 13 O -1.00 -20.23 16.04 -57.17 -0.92 -21.15 16 14 O -0.97 -23.30 17.28 -57.17 -0.99 -24.29 16 15 N -1.12 -16.97 4.88 -4.89 -0.02 -17.00 16 16 C 0.16 2.00 2.72 -67.93 -0.18 1.81 16 17 H 0.10 1.22 7.52 -51.93 -0.39 0.83 16 18 C 0.05 0.62 6.88 37.16 0.26 0.88 16 19 O -0.56 -6.69 12.85 -35.23 -0.45 -7.14 16 20 C -0.08 -0.91 4.83 -26.73 -0.13 -1.04 16 21 C -0.15 -1.71 5.61 -90.62 -0.51 -2.22 16 22 C -0.18 -1.78 10.18 -26.69 -0.27 -2.05 16 23 C -0.18 -1.77 10.26 -26.69 -0.27 -2.05 16 24 H 0.04 0.48 7.16 -51.93 -0.37 0.11 16 25 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 26 H 0.07 1.06 7.00 -51.92 -0.36 0.69 16 27 H 0.04 0.89 8.12 -51.93 -0.42 0.47 16 28 H 0.03 0.90 7.71 -51.92 -0.40 0.50 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.42 6.00 8.86 -34.48 -0.31 5.69 16 31 H 0.06 0.80 6.66 -51.93 -0.35 0.45 16 32 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.38 3.12 9.12 45.56 0.42 3.54 16 34 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 35 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 36 H 0.11 1.42 7.69 -51.93 -0.40 1.02 16 37 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -34.21 345.26 -8.86 -43.06 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -5.47 Total: 5.85 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.93 Total: -9.55 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 0.36 Total: -62.77 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -2.36 Total: -52.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 54.59 SS G_CDS: -0.65 Total: 53.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.21 -8.86 -43.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611109884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.861 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds