Wall clock time and date at job start Fri Apr 10 2020 17:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.46829 * 2 1 4 4 C 1.46503 * 119.99581 * 275.39703 * 3 2 1 5 5 C 1.50699 * 109.47169 * 274.99617 * 4 3 2 6 6 H 1.08004 * 119.99871 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00029 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99704 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99700 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47280 * 60.00391 * 9 7 5 11 11 H 1.48511 * 109.46678 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47635 * 299.99945 * 9 7 5 13 13 S 1.65593 * 119.99791 * 95.39754 * 3 2 1 14 14 O 1.42105 * 106.40196 * 159.48791 * 13 3 2 15 15 O 1.42100 * 106.40446 * 26.56937 * 13 3 2 16 16 N 1.65595 * 107.22060 * 273.02535 * 13 3 2 17 17 C 1.46507 * 120.00408 * 293.96295 * 16 13 3 18 18 H 1.09002 * 109.46826 * 24.26782 * 17 16 13 19 19 C 1.52998 * 109.46680 * 264.27036 * 17 16 13 20 20 O 1.42898 * 109.47431 * 295.81302 * 19 17 16 21 21 C 1.52996 * 109.47409 * 144.26987 * 17 16 13 22 22 C 1.53002 * 117.49687 * 248.74544 * 21 17 16 23 23 C 1.52998 * 117.49610 * 180.08806 * 21 17 16 24 24 H 1.09006 * 109.46803 * 64.89697 * 1 2 3 25 25 H 1.08999 * 109.46787 * 184.89174 * 1 2 3 26 26 H 1.08994 * 109.47282 * 304.89465 * 1 2 3 27 27 H 1.09003 * 109.47561 * 240.00420 * 2 1 3 28 28 H 1.08995 * 109.47257 * 119.99995 * 2 1 3 29 29 H 1.08992 * 109.47379 * 35.00016 * 4 3 2 30 30 H 1.09007 * 109.46563 * 155.00261 * 4 3 2 31 31 H 0.97005 * 119.99475 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00531 * 113.95333 * 16 13 3 33 33 H 1.09000 * 109.47142 * 175.81125 * 19 17 16 34 34 H 1.09007 * 109.47176 * 55.81601 * 19 17 16 35 35 H 0.96695 * 114.00225 * 180.02562 * 20 19 17 36 36 H 1.08995 * 115.54904 * 34.41505 * 21 17 16 37 37 H 1.09003 * 117.50066 * 0.02562 * 22 21 17 38 38 H 1.09003 * 117.49478 * 145.02008 * 22 21 17 39 39 H 1.09004 * 117.49579 * 214.97810 * 23 21 17 40 40 H 1.08996 * 117.50303 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1499 2.1116 -1.2632 5 6 3.4824 1.7933 -1.8910 6 1 4.1629 1.1145 -1.3986 7 6 3.8326 2.3686 -3.0941 8 7 3.0040 3.1955 -3.6934 9 14 5.4840 1.9734 -3.8726 10 1 5.5716 0.5142 -4.1338 11 1 5.6179 2.7148 -5.1524 12 1 6.5755 2.3776 -2.9505 13 16 2.4214 2.1169 1.4277 14 8 3.2794 3.1992 1.0933 15 8 2.7936 1.0783 2.3233 16 7 1.0378 2.7893 2.0406 17 6 0.3862 3.8958 1.3351 18 1 0.6564 3.8630 0.2796 19 6 0.8448 5.2252 1.9378 20 8 0.4056 5.3097 3.2950 21 6 -1.1317 3.7680 1.4773 22 6 -1.9323 3.4213 0.2204 23 6 -1.9967 4.8351 0.8035 24 1 -0.3633 0.4360 -0.9307 25 1 -0.3633 -1.0239 0.0876 26 1 -0.3633 0.5879 0.8428 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3490 1.8142 -1.9400 30 1 2.0850 3.1828 -1.0719 31 1 3.2507 3.6006 -4.5397 32 1 0.6584 2.4506 2.8666 33 1 0.4187 6.0496 1.3661 34 1 1.9328 5.2836 1.9037 35 1 0.6612 6.1288 3.7409 36 1 -1.4824 3.3609 2.4256 37 1 -1.3774 3.2838 -0.7077 38 1 -2.8099 2.7863 0.3419 39 1 -2.9167 5.1298 1.3084 40 1 -1.4843 5.6284 0.2593 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800058873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:18 Heat of formation + Delta-G solvation = -132.488014 kcal Electronic energy + Delta-G solvation = -23403.189927 eV Core-core repulsion = 19958.473801 eV Total energy + Delta-G solvation = -3444.716126 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.62518 -38.26645 -37.66393 -36.97538 -36.83673 -35.04804 -34.69622 -31.52720 -29.39753 -28.47816 -24.95272 -24.67691 -23.29271 -23.04714 -21.40601 -20.25592 -19.06918 -18.35811 -18.30278 -18.05857 -17.70151 -16.94569 -16.30241 -15.79072 -15.52765 -15.38345 -14.82281 -14.74352 -14.60072 -14.19613 -13.84047 -13.58244 -13.53162 -13.33829 -13.12487 -13.03693 -12.91185 -12.76043 -12.67350 -12.36653 -12.29413 -12.15471 -12.03778 -11.74272 -11.63495 -11.28783 -11.01864 -10.85454 -10.59347 -10.34860 -9.78997 -8.19550 -6.30499 -0.32474 1.39111 1.42092 1.49097 2.02330 2.40427 2.63320 2.95793 3.11477 3.36334 3.43325 3.72694 3.94553 4.00319 4.11537 4.20468 4.30621 4.41721 4.49301 4.52088 4.59804 4.74562 4.77846 4.86818 5.04664 5.05563 5.10122 5.17646 5.19597 5.33966 5.39806 5.44566 5.54514 5.72788 5.92053 6.13251 6.20259 6.76982 6.92714 7.37877 8.87404 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.006108 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.673945 B = 4583.193886 C = 4764.272504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.110 3.890 3 N -0.995 5.995 4 C 0.277 3.723 5 C -0.552 4.552 6 H 0.049 0.951 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.279 1.279 13 S 2.793 3.207 14 O -1.008 7.008 15 O -1.014 7.014 16 N -1.101 6.101 17 C 0.183 3.817 18 H 0.080 0.920 19 C 0.064 3.936 20 O -0.569 6.569 21 C -0.145 4.145 22 C -0.183 4.183 23 C -0.162 4.162 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.423 0.577 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.393 0.607 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.926 1.617 10.032 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 N -0.836 5.836 4 C 0.154 3.846 5 C -0.591 4.591 6 H 0.067 0.933 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.190 1.190 11 H -0.200 1.200 12 H -0.205 1.205 13 S 2.802 3.198 14 O -0.992 6.992 15 O -0.998 6.998 16 N -0.863 5.863 17 C 0.075 3.925 18 H 0.098 0.902 19 C -0.016 4.016 20 O -0.377 6.377 21 C -0.165 4.165 22 C -0.220 4.220 23 C -0.200 4.200 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.259 0.741 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.242 0.758 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.225 1.231 9.949 15.050 hybrid contribution 0.924 0.369 -0.447 1.091 sum -10.301 1.600 9.503 14.106 Atomic orbital electron populations 1.22159 0.94260 1.03142 1.02340 1.21365 0.95557 0.81406 1.03250 1.57594 1.81541 1.22669 1.21838 1.18575 0.95692 0.90165 0.80217 1.21820 1.03634 1.27593 1.06082 0.93279 1.25661 1.00538 0.94736 0.97416 1.69981 1.37500 1.30642 1.17795 0.85717 0.80037 0.78883 0.77732 1.19016 1.20043 1.20499 1.01329 0.73727 0.72514 0.72267 1.93561 1.64976 1.56229 1.84389 1.93496 1.82634 1.58323 1.65387 1.55686 1.46919 1.46791 1.36865 1.20462 0.92579 0.84813 0.94611 0.90245 1.22615 0.97721 0.97146 0.84131 1.86394 1.80679 1.45902 1.24697 1.22206 0.90197 1.05924 0.98146 1.23138 1.02788 0.99376 0.96653 1.23011 1.01754 0.92163 1.03039 0.92839 0.89637 0.91969 0.90813 0.90056 0.95272 0.96434 0.92389 0.74115 0.90997 0.94506 0.75801 0.86280 0.90030 0.87203 0.86861 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 10.23 71.98 0.74 -3.50 16 2 C 0.11 3.75 6.41 86.38 0.55 4.31 16 3 N -1.00 -41.00 2.83 -519.83 -1.47 -42.47 16 4 C 0.28 13.75 4.90 85.63 0.42 14.17 16 5 C -0.55 -31.14 9.38 25.60 0.24 -30.90 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 7 C 0.02 0.92 5.46 84.66 0.46 1.38 16 8 N -0.92 -52.98 13.29 21.45 0.28 -52.69 16 9 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 S 2.79 112.77 6.02 -56.49 -0.34 112.43 16 14 O -1.01 -49.19 16.28 -128.00 -2.08 -51.27 16 15 O -1.01 -43.17 16.75 -128.00 -2.14 -45.31 16 16 N -1.10 -33.26 5.46 -169.38 -0.92 -34.18 16 17 C 0.18 5.22 2.81 44.99 0.13 5.35 16 18 H 0.08 2.65 6.38 -2.39 -0.02 2.64 16 19 C 0.06 1.68 6.66 71.98 0.48 2.16 16 20 O -0.57 -12.57 13.11 -148.98 -1.95 -14.52 16 21 C -0.15 -3.24 4.93 -10.79 -0.05 -3.30 16 22 C -0.18 -3.92 10.18 30.62 0.31 -3.61 16 23 C -0.16 -3.12 9.79 30.62 0.30 -2.82 16 24 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 2.64 8.11 -2.39 -0.02 2.62 16 28 H 0.08 2.66 6.95 -2.39 -0.02 2.64 16 29 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 30 H 0.02 0.94 6.41 -2.38 -0.02 0.92 16 31 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 32 H 0.42 10.76 8.83 -96.74 -0.85 9.91 16 33 H 0.07 1.61 7.44 -2.39 -0.02 1.59 16 34 H 0.04 1.16 7.68 -2.38 -0.02 1.14 16 35 H 0.39 5.26 9.12 -74.06 -0.68 4.58 16 36 H 0.12 2.45 8.12 -2.39 -0.02 2.43 16 37 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 38 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.09 1.82 7.65 -2.39 -0.02 1.80 16 Total: -1.00 -71.23 345.02 -3.51 -74.74 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.48 Total: 23.48 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 3.58 Total: -16.75 kcal Atomic # 7 Polarization: -127.23 SS G_CDS: -2.11 Total: -129.34 kcal Atomic # 8 Polarization: -104.93 SS G_CDS: -6.18 Total: -111.11 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 112.77 SS G_CDS: -0.34 Total: 112.43 kcal Total: -71.23 -3.51 -74.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800058873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.747 kcal (2) G-P(sol) polarization free energy of solvation -71.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds