Wall clock time and date at job start Fri Apr 10 2020 17:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00189 * 2 1 4 4 H 1.09001 * 112.84742 * 341.18749 * 3 2 1 5 5 C 1.53776 * 113.69086 * 112.46343 * 3 2 1 6 6 C 1.53779 * 87.08192 * 89.12904 * 5 3 2 7 7 H 1.09008 * 113.68840 * 270.87342 * 6 5 3 8 8 C 1.52995 * 113.61839 * 139.98100 * 6 5 3 9 9 N 1.46507 * 109.47227 * 87.49624 * 8 6 5 10 10 S 1.65600 * 119.99788 * 165.00212 * 9 8 6 11 11 O 1.42107 * 106.40367 * 311.46166 * 10 9 8 12 12 O 1.42100 * 106.40015 * 178.54373 * 10 9 8 13 13 N 1.65599 * 107.22019 * 65.00323 * 10 9 8 14 14 C 1.46501 * 119.99777 * 269.99900 * 13 10 9 15 15 C 1.46495 * 119.99842 * 89.99617 * 13 10 9 16 16 C 1.50702 * 109.47574 * 264.99977 * 15 13 10 17 17 H 1.08002 * 119.99441 * 0.02562 * 16 15 13 18 18 C 1.37871 * 120.00075 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 179.73007 * 18 16 15 21 21 H 1.48494 * 109.47225 * 180.27306 * 20 18 16 22 22 H 1.48506 * 109.46866 * 300.27330 * 20 18 16 23 23 H 1.48498 * 109.47306 * 60.26614 * 20 18 16 24 24 C 1.53782 * 113.61282 * 210.00146 * 3 2 1 25 25 H 1.09003 * 109.46847 * 59.99990 * 1 2 3 26 26 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47174 * 300.00583 * 1 2 3 28 28 H 1.08997 * 113.61791 * 334.57485 * 5 3 2 29 29 H 1.09007 * 113.61076 * 203.67241 * 5 3 2 30 30 H 1.09003 * 109.47117 * 327.50435 * 8 6 5 31 31 H 1.08994 * 109.47928 * 207.50315 * 8 6 5 32 32 H 0.96990 * 119.99684 * 345.00571 * 9 8 6 33 33 H 1.08998 * 109.47108 * 269.99234 * 14 13 10 34 34 H 1.09000 * 109.47673 * 30.00332 * 14 13 10 35 35 H 1.09003 * 109.46752 * 150.00138 * 14 13 10 36 36 H 1.09009 * 109.47230 * 145.00318 * 15 13 10 37 37 H 1.08998 * 109.47557 * 25.00809 * 15 13 10 38 38 H 0.97005 * 119.99656 * 359.72741 * 19 18 16 39 39 H 1.09000 * 113.61760 * 156.25280 * 24 3 2 40 40 H 1.09001 * 113.69435 * 25.35273 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 -0.3239 5 6 2.7531 1.6511 1.3013 6 6 4.0063 1.0352 0.6570 7 1 4.1106 -0.0348 0.8373 8 6 5.2905 1.8145 0.9470 9 7 5.8761 1.3408 2.2036 10 16 7.4407 1.7263 2.5851 11 8 8.2191 1.4307 1.4335 12 8 7.6944 1.1564 3.8619 13 7 7.5062 3.3689 2.7848 14 6 7.8015 4.2346 1.6404 15 6 7.2688 3.9562 4.1057 16 6 5.8219 4.3610 4.2229 17 1 5.1467 4.1967 3.3962 18 6 5.3604 4.9409 5.3854 19 7 6.1826 5.1405 6.3923 20 14 3.5686 5.4496 5.5279 21 1 3.3294 6.0504 6.8647 22 1 3.2516 6.4461 4.4735 23 1 2.7004 4.2568 5.3587 24 6 3.3756 1.3718 -0.7046 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.3926 1.0995 2.1696 29 1 2.8379 2.7223 1.4844 30 1 5.0599 2.8765 1.0314 31 1 6.0005 1.6605 0.1345 32 1 5.3473 0.8013 2.8120 33 1 8.8786 4.3840 1.5662 34 1 7.4356 3.7665 0.7266 35 1 7.3098 5.1978 1.7772 36 1 7.9030 4.8337 4.2325 37 1 7.5047 3.2231 4.8771 38 1 7.1129 4.8760 6.3185 39 1 3.6306 2.3666 -1.0698 40 1 3.5189 0.5954 -1.4560 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882591869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:35 Heat of formation + Delta-G solvation = -106.196384 kcal Electronic energy + Delta-G solvation = -22579.277901 eV Core-core repulsion = 19135.701865 eV Total energy + Delta-G solvation = -3443.576036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.75674 -36.77237 -36.49011 -35.65272 -35.26259 -33.94371 -32.65865 -27.67207 -27.46778 -26.40761 -25.70294 -24.84543 -22.59341 -22.43785 -19.72459 -18.81584 -17.32031 -17.18789 -16.75466 -16.38497 -16.01828 -15.64131 -15.31866 -14.87130 -14.29789 -13.92963 -13.78077 -13.48827 -13.46791 -13.04758 -12.52370 -12.48335 -12.28481 -12.08161 -11.81295 -11.73654 -11.71007 -11.53442 -11.35581 -11.11032 -10.78274 -10.64608 -10.61946 -10.54727 -10.19352 -10.13013 -9.64111 -9.41169 -9.09720 -8.45548 -7.95811 -6.45123 -4.19229 1.27090 3.35231 3.37272 3.47082 3.48303 3.56466 4.13164 4.45277 4.48689 4.56023 4.72196 4.73306 4.98494 5.10075 5.17713 5.25146 5.29568 5.33843 5.42653 5.46612 5.62752 5.64157 5.69136 5.83459 5.97883 6.00121 6.09796 6.16347 6.22942 6.40366 6.45719 6.99012 7.05285 7.17539 7.33153 7.54137 7.95445 8.36240 8.72657 9.52353 10.92384 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.006167 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.993585 B = 4539.523717 C = 6214.717162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.060 3.940 4 H 0.073 0.927 5 C -0.154 4.154 6 C -0.108 4.108 7 H 0.100 0.900 8 C 0.131 3.869 9 N -1.122 6.122 10 S 2.791 3.209 11 O -1.000 7.000 12 O -0.982 6.982 13 N -0.993 5.993 14 C 0.105 3.895 15 C 0.235 3.765 16 C -0.617 4.617 17 H 0.057 0.943 18 C 0.021 3.979 19 N -0.906 5.906 20 Si 1.068 2.932 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.287 1.287 24 C -0.133 4.133 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.414 0.586 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.027 0.973 37 H 0.041 0.959 38 H 0.270 0.730 39 H 0.096 0.904 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 -5.605 -14.137 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C 0.002 3.998 4 H 0.091 0.909 5 C -0.192 4.192 6 C -0.128 4.128 7 H 0.118 0.882 8 C 0.004 3.996 9 N -0.881 5.881 10 S 2.798 3.202 11 O -0.984 6.984 12 O -0.966 6.966 13 N -0.835 5.835 14 C -0.041 4.041 15 C 0.112 3.888 16 C -0.656 4.656 17 H 0.075 0.925 18 C -0.184 4.184 19 N -0.542 5.542 20 Si 0.896 3.104 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.214 1.214 24 C -0.171 4.171 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.247 0.753 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.599 -5.554 -13.150 16.665 hybrid contribution 0.247 -0.318 -0.770 0.868 sum -8.353 -5.872 -13.920 17.263 Atomic orbital electron populations 1.22796 0.81047 1.02653 1.00022 1.87871 1.19599 1.26793 1.94633 1.23106 0.94378 0.84904 0.97436 0.90864 1.23577 0.95986 1.02031 0.97575 1.22679 0.93129 1.00629 0.96320 0.88224 1.21222 0.95020 0.98033 0.85312 1.55851 1.34510 1.68133 1.29625 1.01544 0.73066 0.72989 0.72553 1.93541 1.68331 1.84060 1.52456 1.93581 1.84133 1.77253 1.41657 1.57446 1.85135 1.24227 1.16707 1.21246 0.99846 0.96187 0.86860 1.19259 0.97291 0.94415 0.77803 1.22339 0.94793 1.45365 1.03108 0.92504 1.25781 1.06165 0.94336 0.92143 1.70787 1.06497 1.44451 1.32452 0.83561 0.74236 0.76397 0.76220 1.20706 1.21490 1.21352 1.23210 0.94231 1.02782 0.96899 0.94084 0.89706 0.93883 0.90623 0.88565 0.91579 0.90951 0.75267 0.93723 0.92777 0.90831 0.95536 0.94160 0.91939 0.88608 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.36 16 2 O -0.37 -4.23 10.64 -35.23 -0.37 -4.61 16 3 C 0.06 0.63 4.37 -25.92 -0.11 0.51 16 4 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 5 C -0.15 -1.84 7.47 -25.92 -0.19 -2.04 16 6 C -0.11 -1.29 3.72 -89.81 -0.33 -1.63 16 7 H 0.10 1.24 8.14 -51.92 -0.42 0.81 16 8 C 0.13 1.81 6.08 -4.04 -0.02 1.79 16 9 N -1.12 -18.55 6.06 -10.61 -0.06 -18.61 16 10 S 2.79 55.88 6.11 -107.50 -0.66 55.23 16 11 O -1.00 -20.65 16.68 -57.17 -0.95 -21.61 16 12 O -0.98 -23.13 16.69 -57.17 -0.95 -24.08 16 13 N -0.99 -20.59 3.23 -123.05 -0.40 -20.99 16 14 C 0.11 1.80 10.31 59.85 0.62 2.42 16 15 C 0.24 5.83 4.72 -5.20 -0.02 5.80 16 16 C -0.62 -16.19 9.38 -34.44 -0.32 -16.51 16 17 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 18 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 19 N -0.91 -26.68 13.65 55.43 0.76 -25.92 16 20 Si 1.07 24.05 29.90 -169.99 -5.08 18.96 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.13 -1.33 7.47 -25.92 -0.19 -1.52 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.17 7.90 -51.93 -0.41 0.76 16 30 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 31 H 0.07 0.96 7.75 -51.93 -0.40 0.56 16 32 H 0.41 6.44 8.65 -34.47 -0.30 6.14 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 35 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 36 H 0.03 0.67 7.98 -51.92 -0.41 0.26 16 37 H 0.04 1.09 6.78 -51.93 -0.35 0.74 16 38 H 0.27 7.94 7.22 -40.82 -0.29 7.65 16 39 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -33.38 344.86 -8.52 -41.90 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.40 Total: 3.87 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 0.41 Total: -9.34 kcal Atomic # 7 Polarization: -65.82 SS G_CDS: 0.30 Total: -65.52 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -2.28 Total: -50.29 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.96 kcal Atomic # 16 Polarization: 55.88 SS G_CDS: -0.66 Total: 55.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.38 -8.52 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882591869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.299 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds