Wall clock time and date at job start Fri Apr 10 2020 17:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00189 * 2 1 4 4 H 1.09001 * 112.84742 * 341.18749 * 3 2 1 5 5 C 1.53776 * 113.69086 * 112.46343 * 3 2 1 6 6 C 1.53779 * 87.08192 * 89.12904 * 5 3 2 7 7 H 1.09008 * 113.68840 * 270.87342 * 6 5 3 8 8 C 1.52995 * 113.61839 * 139.98100 * 6 5 3 9 9 N 1.46507 * 109.47227 * 87.49624 * 8 6 5 10 10 S 1.65600 * 119.99788 * 165.00212 * 9 8 6 11 11 O 1.42107 * 106.40367 * 311.46166 * 10 9 8 12 12 O 1.42100 * 106.40015 * 178.54373 * 10 9 8 13 13 N 1.65599 * 107.22019 * 65.00323 * 10 9 8 14 14 C 1.46501 * 119.99777 * 269.99900 * 13 10 9 15 15 C 1.46495 * 119.99842 * 89.99617 * 13 10 9 16 16 C 1.50702 * 109.47574 * 264.99977 * 15 13 10 17 17 H 1.08002 * 119.99441 * 0.02562 * 16 15 13 18 18 C 1.37871 * 120.00075 * 180.02562 * 16 15 13 19 19 N 1.31514 * 120.00481 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99886 * 179.73007 * 18 16 15 21 21 H 1.48494 * 109.47225 * 180.27306 * 20 18 16 22 22 H 1.48506 * 109.46866 * 300.27330 * 20 18 16 23 23 H 1.48498 * 109.47306 * 60.26614 * 20 18 16 24 24 C 1.53782 * 113.61282 * 210.00146 * 3 2 1 25 25 H 1.09003 * 109.46847 * 59.99990 * 1 2 3 26 26 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47174 * 300.00583 * 1 2 3 28 28 H 1.08997 * 113.61791 * 334.57485 * 5 3 2 29 29 H 1.09007 * 113.61076 * 203.67241 * 5 3 2 30 30 H 1.09003 * 109.47117 * 327.50435 * 8 6 5 31 31 H 1.08994 * 109.47928 * 207.50315 * 8 6 5 32 32 H 0.96990 * 119.99684 * 345.00571 * 9 8 6 33 33 H 1.08998 * 109.47108 * 269.99234 * 14 13 10 34 34 H 1.09000 * 109.47673 * 30.00332 * 14 13 10 35 35 H 1.09003 * 109.46752 * 150.00138 * 14 13 10 36 36 H 1.09009 * 109.47230 * 145.00318 * 15 13 10 37 37 H 1.08998 * 109.47557 * 25.00809 * 15 13 10 38 38 H 0.97005 * 119.99656 * 359.72741 * 19 18 16 39 39 H 1.09000 * 113.61760 * 156.25280 * 24 3 2 40 40 H 1.09001 * 113.69435 * 25.35273 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 -0.3239 5 6 2.7531 1.6511 1.3013 6 6 4.0063 1.0352 0.6570 7 1 4.1106 -0.0348 0.8373 8 6 5.2905 1.8145 0.9470 9 7 5.8761 1.3408 2.2036 10 16 7.4407 1.7263 2.5851 11 8 8.2191 1.4307 1.4335 12 8 7.6944 1.1564 3.8619 13 7 7.5062 3.3689 2.7848 14 6 7.8015 4.2346 1.6404 15 6 7.2688 3.9562 4.1057 16 6 5.8219 4.3610 4.2229 17 1 5.1467 4.1967 3.3962 18 6 5.3604 4.9409 5.3854 19 7 6.1826 5.1405 6.3923 20 14 3.5686 5.4496 5.5279 21 1 3.3294 6.0504 6.8647 22 1 3.2516 6.4461 4.4735 23 1 2.7004 4.2568 5.3587 24 6 3.3756 1.3718 -0.7046 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.3926 1.0995 2.1696 29 1 2.8379 2.7223 1.4844 30 1 5.0599 2.8765 1.0314 31 1 6.0005 1.6605 0.1345 32 1 5.3473 0.8013 2.8120 33 1 8.8786 4.3840 1.5662 34 1 7.4356 3.7665 0.7266 35 1 7.3098 5.1978 1.7772 36 1 7.9030 4.8337 4.2325 37 1 7.5047 3.2231 4.8771 38 1 7.1129 4.8760 6.3185 39 1 3.6306 2.3666 -1.0698 40 1 3.5189 0.5954 -1.4560 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882591869.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:35 Heat of formation + Delta-G solvation = -131.598980 kcal Electronic energy + Delta-G solvation = -22580.379440 eV Core-core repulsion = 19135.701865 eV Total energy + Delta-G solvation = -3444.677575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60432 -38.39653 -37.52351 -37.35038 -36.97464 -35.12312 -34.65092 -29.32773 -28.58922 -27.20505 -26.59843 -26.51888 -24.40624 -23.53384 -20.78628 -20.20662 -19.07696 -18.82751 -18.24584 -17.74845 -17.18219 -16.53600 -16.29874 -16.07487 -15.66985 -15.61346 -15.23981 -14.99641 -14.41910 -14.20336 -14.17985 -13.98312 -13.45464 -13.37188 -13.27685 -13.21724 -13.19098 -12.91372 -12.81669 -12.49450 -12.37180 -12.27852 -11.93157 -11.71587 -11.53467 -11.28650 -11.01511 -10.55055 -10.42687 -10.39024 -9.75087 -8.61117 -6.36939 -0.33402 1.55646 1.63553 1.81432 1.93985 2.56324 2.59877 2.77539 3.18898 3.37987 3.61958 3.67056 3.85438 3.93204 3.97225 4.28492 4.34819 4.51851 4.58392 4.59515 4.64576 4.71833 4.74938 4.85185 4.86572 4.91147 4.95755 4.96409 4.97634 5.17011 5.27911 5.33889 5.44328 5.67178 5.88162 6.11575 6.27477 6.33363 6.53803 7.44010 8.75415 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.006167 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.993585 B = 4539.523717 C = 6214.717162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.063 3.937 4 H 0.092 0.908 5 C -0.160 4.160 6 C -0.109 4.109 7 H 0.092 0.908 8 C 0.125 3.875 9 N -1.115 6.115 10 S 2.805 3.195 11 O -1.005 7.005 12 O -1.023 7.023 13 N -0.999 5.999 14 C 0.096 3.904 15 C 0.245 3.755 16 C -0.613 4.613 17 H 0.069 0.931 18 C -0.032 4.032 19 N -0.938 5.938 20 Si 1.113 2.887 21 H -0.291 1.291 22 H -0.264 1.264 23 H -0.269 1.269 24 C -0.123 4.123 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.419 0.581 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.256 0.744 39 H 0.114 0.886 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.382 -5.300 -16.394 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.005 3.995 4 H 0.110 0.890 5 C -0.198 4.198 6 C -0.129 4.129 7 H 0.111 0.889 8 C -0.001 4.001 9 N -0.877 5.877 10 S 2.813 3.187 11 O -0.988 6.988 12 O -1.007 7.007 13 N -0.840 5.840 14 C -0.050 4.050 15 C 0.121 3.879 16 C -0.652 4.652 17 H 0.087 0.913 18 C -0.231 4.231 19 N -0.575 5.575 20 Si 0.934 3.066 21 H -0.217 1.217 22 H -0.189 1.189 23 H -0.194 1.194 24 C -0.161 4.161 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.253 0.747 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.065 0.935 39 H 0.133 0.867 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.493 -5.258 -15.454 19.406 hybrid contribution 0.863 -0.467 -0.134 0.990 sum -9.630 -5.726 -15.588 19.197 Atomic orbital electron populations 1.22974 0.79596 1.03691 1.00821 1.87841 1.21324 1.27458 1.94676 1.23118 0.94984 0.85150 0.96276 0.88966 1.23611 0.96457 1.01729 0.97989 1.22665 0.92149 0.99935 0.98150 0.88947 1.21493 0.96004 0.98547 0.84045 1.55616 1.33448 1.67902 1.30781 1.00972 0.73703 0.72490 0.71576 1.93528 1.69136 1.83996 1.52155 1.93523 1.85225 1.78073 1.43880 1.57365 1.85608 1.24814 1.16199 1.21516 1.00917 0.96031 0.86497 1.18878 0.96660 0.93164 0.79209 1.22638 0.95444 1.43991 1.03143 0.91281 1.27263 1.09596 0.94205 0.92009 1.70916 1.06164 1.46657 1.33794 0.83000 0.69901 0.77276 0.76402 1.21704 1.18865 1.19379 1.23225 0.93314 1.03937 0.95657 0.92574 0.88703 0.93736 0.91964 0.88628 0.91127 0.90044 0.74689 0.92596 0.89966 0.90677 0.96687 0.97147 0.93482 0.86732 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 113.37 1.23 1.59 16 2 O -0.39 -8.19 10.64 -148.98 -1.58 -9.78 16 3 C 0.06 1.15 4.37 31.12 0.14 1.28 16 4 H 0.09 1.34 7.87 -2.39 -0.02 1.32 16 5 C -0.16 -3.51 7.47 31.12 0.23 -3.28 16 6 C -0.11 -2.39 3.72 -10.27 -0.04 -2.43 16 7 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 8 C 0.12 3.17 6.08 86.38 0.53 3.70 16 9 N -1.12 -35.62 6.06 -187.49 -1.14 -36.76 16 10 S 2.80 110.96 6.11 -56.49 -0.34 110.61 16 11 O -1.00 -40.13 16.68 -128.00 -2.14 -42.27 16 12 O -1.02 -49.06 16.69 -128.00 -2.14 -51.20 16 13 N -1.00 -40.80 3.23 -543.22 -1.75 -42.55 16 14 C 0.10 3.10 10.31 127.77 1.32 4.42 16 15 C 0.25 12.33 4.72 85.63 0.40 12.74 16 16 C -0.61 -31.88 9.38 25.60 0.24 -31.64 16 17 H 0.07 3.36 7.81 -2.91 -0.02 3.34 16 18 C -0.03 -1.76 5.46 84.65 0.46 -1.30 16 19 N -0.94 -56.19 13.65 21.45 0.29 -55.90 16 20 Si 1.11 47.20 29.90 68.60 2.05 49.25 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 23 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 24 C -0.12 -2.09 7.47 31.12 0.23 -1.86 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 2.10 7.90 -2.38 -0.02 2.08 16 30 H 0.07 1.76 7.84 -2.39 -0.02 1.74 16 31 H 0.08 1.94 7.75 -2.39 -0.02 1.92 16 32 H 0.42 12.76 8.65 -96.75 -0.84 11.93 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 35 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 36 H 0.02 0.79 7.98 -2.38 -0.02 0.77 16 37 H 0.01 0.59 6.78 -2.39 -0.02 0.58 16 38 H 0.26 15.60 7.22 -92.70 -0.67 14.93 16 39 H 0.11 1.52 8.10 -2.39 -0.02 1.50 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -71.34 344.86 -1.71 -73.06 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.29 Total: 22.31 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.74 Total: -16.78 kcal Atomic # 7 Polarization: -132.61 SS G_CDS: -2.59 Total: -135.21 kcal Atomic # 8 Polarization: -97.39 SS G_CDS: -5.86 Total: -103.25 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.05 Total: 49.25 kcal Atomic # 16 Polarization: 110.96 SS G_CDS: -0.34 Total: 110.61 kcal Total: -71.34 -1.71 -73.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882591869.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.540 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds