Wall clock time and date at job start Fri Apr 10 2020 17:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00015 * 2 1 4 4 C 1.52999 * 109.47161 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.84845 * 316.18886 * 4 3 2 6 6 C 1.53952 * 113.66771 * 87.43949 * 4 3 2 7 7 C 1.53785 * 87.01940 * 139.93117 * 6 4 3 8 8 H 1.08995 * 113.61253 * 89.23163 * 7 6 4 9 9 N 1.46504 * 113.61133 * 220.04561 * 7 6 4 10 10 S 1.65596 * 119.99710 * 244.13604 * 9 7 6 11 11 O 1.42097 * 106.40620 * 311.46002 * 10 9 7 12 12 O 1.42107 * 106.39999 * 178.54119 * 10 9 7 13 13 N 1.65597 * 107.22163 * 65.00662 * 10 9 7 14 14 C 1.46500 * 119.99805 * 270.00311 * 13 10 9 15 15 C 1.46506 * 120.00084 * 89.99278 * 13 10 9 16 16 C 1.50697 * 109.46529 * 95.00545 * 15 13 10 17 17 H 1.08002 * 120.00599 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99675 * 179.97438 * 16 15 13 19 19 N 1.31517 * 120.00210 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 C 1.53773 * 87.17132 * 334.63724 * 7 6 4 25 25 H 1.09002 * 109.47009 * 300.00304 * 1 2 3 26 26 H 1.09000 * 109.46653 * 60.00403 * 1 2 3 27 27 H 1.09001 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47391 * 59.99149 * 3 2 1 29 29 H 1.09000 * 109.47123 * 299.99858 * 3 2 1 30 30 H 1.09005 * 113.61445 * 25.41254 * 6 4 3 31 31 H 1.09000 * 113.66488 * 254.46147 * 6 4 3 32 32 H 0.96996 * 119.99991 * 64.14359 * 9 7 6 33 33 H 1.09012 * 109.46482 * 269.99347 * 14 13 10 34 34 H 1.08995 * 109.47471 * 29.98854 * 14 13 10 35 35 H 1.09003 * 109.47370 * 150.00165 * 14 13 10 36 36 H 1.08995 * 109.46912 * 335.00648 * 15 13 10 37 37 H 1.09007 * 109.46641 * 215.00280 * 15 13 10 38 38 H 0.96998 * 119.99640 * 180.02562 * 19 18 16 39 39 H 1.09000 * 113.61537 * 139.94092 * 24 7 6 40 40 H 1.08997 * 113.61824 * 270.75441 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8999 0.4288 0.6963 6 6 4.1472 1.0728 -1.4077 7 6 5.2679 1.9992 -0.9071 8 1 6.1077 1.4668 -0.4606 9 7 5.6873 2.9986 -1.8928 10 16 7.2272 2.9664 -2.5009 11 8 8.0976 2.8515 -1.3836 12 8 7.3085 4.0265 -3.4438 13 7 7.3846 1.5611 -3.3628 14 6 7.8546 0.3430 -2.6983 15 6 7.0536 1.5360 -4.7898 16 6 8.3062 1.7506 -5.5997 17 1 9.2540 1.8912 -5.1014 18 6 8.2423 1.7665 -6.9769 19 7 9.3353 1.9543 -7.6838 20 14 6.6030 1.5226 -7.8387 21 1 6.3881 0.0754 -8.0932 22 1 5.5094 2.0416 -6.9786 23 1 6.6084 2.2566 -9.1296 24 6 4.2603 2.5353 0.1234 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6885 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.5297 1.5169 -2.1885 31 1 4.4896 0.0686 -1.6575 32 1 5.0629 3.6793 -2.1891 33 1 8.9415 0.2903 -2.7629 34 1 7.5534 0.3612 -1.6509 35 1 7.4189 -0.5286 -3.1868 36 1 6.3379 2.3278 -5.0107 37 1 6.6172 0.5701 -5.0445 38 1 9.2902 1.9657 -8.6527 39 1 4.6940 2.7102 1.1080 40 1 3.6749 3.3810 -0.2373 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882697166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:38 Heat of formation + Delta-G solvation = -98.813739 kcal Electronic energy + Delta-G solvation = -22329.375945 eV Core-core repulsion = 18886.120045 eV Total energy + Delta-G solvation = -3443.255900 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.68445 -37.62486 -36.62180 -35.61758 -35.20682 -33.12568 -32.37024 -28.70025 -28.38917 -26.21035 -25.76458 -25.16112 -22.46093 -21.92307 -20.06499 -18.92238 -17.32138 -16.98282 -16.81289 -16.55251 -16.34129 -16.09583 -15.30787 -15.09039 -14.66135 -14.21478 -13.71506 -13.43745 -13.06731 -12.74846 -12.65901 -12.54968 -12.40246 -12.35940 -12.02498 -11.80746 -11.61922 -11.50255 -11.31265 -11.27337 -10.94633 -10.86752 -10.58989 -10.54789 -10.46762 -10.20297 -9.90886 -9.55413 -9.31256 -8.58515 -8.11103 -6.06978 -4.06080 1.15347 3.26322 3.32573 3.34405 3.38388 3.51437 4.08771 4.32748 4.38165 4.39068 4.62216 4.67404 4.89998 4.95140 4.99989 5.09618 5.14685 5.22252 5.22794 5.33942 5.37161 5.49624 5.56183 5.59928 5.82485 5.88205 5.94282 5.98509 6.21685 6.38774 6.43105 6.70684 6.87053 7.00656 7.13535 7.42671 7.59367 8.50370 8.98143 9.51980 11.06739 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.004629 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.431168 B = 6047.605332 C = 7039.700615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.073 3.927 4 C -0.110 4.110 5 H 0.102 0.898 6 C -0.145 4.145 7 C 0.130 3.870 8 H 0.115 0.885 9 N -1.122 6.122 10 S 2.781 3.219 11 O -0.993 6.993 12 O -0.963 6.963 13 N -0.990 5.990 14 C 0.107 3.893 15 C 0.229 3.771 16 C -0.531 4.531 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.874 3.126 21 H -0.275 1.275 22 H -0.265 1.265 23 H -0.283 1.283 24 C -0.135 4.135 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.412 0.588 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.021 -2.854 16.413 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.004 4.004 4 C -0.129 4.129 5 H 0.121 0.879 6 C -0.185 4.185 7 C 0.022 3.978 8 H 0.133 0.867 9 N -0.879 5.879 10 S 2.788 3.212 11 O -0.976 6.976 12 O -0.947 6.947 13 N -0.832 5.832 14 C -0.040 4.040 15 C 0.106 3.894 16 C -0.571 4.571 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.701 3.299 21 H -0.201 1.201 22 H -0.190 1.190 23 H -0.209 1.209 24 C -0.174 4.174 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.245 0.755 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.005 -2.474 16.393 23.044 hybrid contribution -1.577 0.087 -0.865 1.801 sum -17.583 -2.387 15.528 23.579 Atomic orbital electron populations 1.22732 0.81228 1.02725 0.99856 1.87901 1.19489 1.28102 1.95381 1.22544 0.93170 0.84605 1.00075 1.22423 0.92743 0.98679 0.99060 0.87936 1.23614 0.97625 1.00929 0.96325 1.22176 0.96595 0.89711 0.89361 0.86733 1.56266 1.34715 1.41211 1.55672 1.02002 0.73051 0.73386 0.72720 1.93548 1.63527 1.86980 1.53579 1.93648 1.85433 1.53692 1.61905 1.57388 1.80266 1.25634 1.19961 1.21265 1.00224 0.87518 0.94960 1.19439 0.97104 0.97220 0.75680 1.21394 0.94620 1.49838 0.91208 0.90444 1.24881 0.96347 0.94543 0.97278 1.69899 1.27510 1.49620 1.06354 0.86890 0.84774 0.78536 0.79714 1.20056 1.18964 1.20892 1.23336 0.97270 0.96732 1.00073 0.94241 0.94104 0.89678 0.93288 0.93082 0.89345 0.90399 0.75468 0.92708 0.92931 0.91407 0.94912 0.95332 0.92539 0.90344 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.89 10.70 -35.23 -0.38 -4.27 16 3 C 0.07 0.61 5.78 37.16 0.21 0.82 16 4 C -0.11 -0.95 4.01 -89.72 -0.36 -1.31 16 5 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.15 -1.48 7.45 -25.83 -0.19 -1.67 16 7 C 0.13 1.45 4.44 -67.12 -0.30 1.15 16 8 H 0.11 1.28 6.91 -51.93 -0.36 0.92 16 9 N -1.12 -15.25 5.85 -4.20 -0.02 -15.27 16 10 S 2.78 53.39 6.03 -107.50 -0.65 52.74 16 11 O -0.99 -20.39 16.72 -57.17 -0.96 -21.34 16 12 O -0.96 -22.62 17.11 -57.17 -0.98 -23.60 16 13 N -0.99 -19.78 3.23 -123.04 -0.40 -20.17 16 14 C 0.11 1.76 10.33 59.85 0.62 2.38 16 15 C 0.23 5.36 4.19 -5.19 -0.02 5.34 16 16 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 17 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 20 Si 0.87 21.14 27.47 -169.99 -4.67 16.48 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.13 -1.16 7.42 -25.92 -0.19 -1.35 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.41 7.85 -51.93 -0.41 0.00 16 30 H 0.09 0.91 7.90 -51.93 -0.41 0.50 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.41 4.78 8.93 -34.47 -0.31 4.48 16 33 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.05 0.70 6.94 -51.93 -0.36 0.34 16 35 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 36 H 0.03 0.77 6.67 -51.93 -0.35 0.43 16 37 H 0.03 0.63 7.39 -51.93 -0.38 0.24 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -35.94 341.99 -8.06 -44.00 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.38 Total: 0.14 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 0.44 Total: -6.91 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 0.35 Total: -62.40 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -2.31 Total: -49.21 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.65 Total: 52.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.94 -8.06 -44.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882697166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.816 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds