Wall clock time and date at job start Fri Apr 10 2020 17:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00015 * 2 1 4 4 C 1.52999 * 109.47161 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.84845 * 316.18886 * 4 3 2 6 6 C 1.53952 * 113.66771 * 87.43949 * 4 3 2 7 7 C 1.53785 * 87.01940 * 139.93117 * 6 4 3 8 8 H 1.08995 * 113.61253 * 89.23163 * 7 6 4 9 9 N 1.46504 * 113.61133 * 220.04561 * 7 6 4 10 10 S 1.65596 * 119.99710 * 244.13604 * 9 7 6 11 11 O 1.42097 * 106.40620 * 311.46002 * 10 9 7 12 12 O 1.42107 * 106.39999 * 178.54119 * 10 9 7 13 13 N 1.65597 * 107.22163 * 65.00662 * 10 9 7 14 14 C 1.46500 * 119.99805 * 270.00311 * 13 10 9 15 15 C 1.46506 * 120.00084 * 89.99278 * 13 10 9 16 16 C 1.50697 * 109.46529 * 95.00545 * 15 13 10 17 17 H 1.08002 * 120.00599 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99675 * 179.97438 * 16 15 13 19 19 N 1.31517 * 120.00210 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 C 1.53773 * 87.17132 * 334.63724 * 7 6 4 25 25 H 1.09002 * 109.47009 * 300.00304 * 1 2 3 26 26 H 1.09000 * 109.46653 * 60.00403 * 1 2 3 27 27 H 1.09001 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47391 * 59.99149 * 3 2 1 29 29 H 1.09000 * 109.47123 * 299.99858 * 3 2 1 30 30 H 1.09005 * 113.61445 * 25.41254 * 6 4 3 31 31 H 1.09000 * 113.66488 * 254.46147 * 6 4 3 32 32 H 0.96996 * 119.99991 * 64.14359 * 9 7 6 33 33 H 1.09012 * 109.46482 * 269.99347 * 14 13 10 34 34 H 1.08995 * 109.47471 * 29.98854 * 14 13 10 35 35 H 1.09003 * 109.47370 * 150.00165 * 14 13 10 36 36 H 1.08995 * 109.46912 * 335.00648 * 15 13 10 37 37 H 1.09007 * 109.46641 * 215.00280 * 15 13 10 38 38 H 0.96998 * 119.99640 * 180.02562 * 19 18 16 39 39 H 1.09000 * 113.61537 * 139.94092 * 24 7 6 40 40 H 1.08997 * 113.61824 * 270.75441 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8999 0.4288 0.6963 6 6 4.1472 1.0728 -1.4077 7 6 5.2679 1.9992 -0.9071 8 1 6.1077 1.4668 -0.4606 9 7 5.6873 2.9986 -1.8928 10 16 7.2272 2.9664 -2.5009 11 8 8.0976 2.8515 -1.3836 12 8 7.3085 4.0265 -3.4438 13 7 7.3846 1.5611 -3.3628 14 6 7.8546 0.3430 -2.6983 15 6 7.0536 1.5360 -4.7898 16 6 8.3062 1.7506 -5.5997 17 1 9.2540 1.8912 -5.1014 18 6 8.2423 1.7665 -6.9769 19 7 9.3353 1.9543 -7.6838 20 14 6.6030 1.5226 -7.8387 21 1 6.3881 0.0754 -8.0932 22 1 5.5094 2.0416 -6.9786 23 1 6.6084 2.2566 -9.1296 24 6 4.2603 2.5353 0.1234 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6885 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.5297 1.5169 -2.1885 31 1 4.4896 0.0686 -1.6575 32 1 5.0629 3.6793 -2.1891 33 1 8.9415 0.2903 -2.7629 34 1 7.5534 0.3612 -1.6509 35 1 7.4189 -0.5286 -3.1868 36 1 6.3379 2.3278 -5.0107 37 1 6.6172 0.5701 -5.0445 38 1 9.2902 1.9657 -8.6527 39 1 4.6940 2.7102 1.1080 40 1 3.6749 3.3810 -0.2373 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882697166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:37 Heat of formation + Delta-G solvation = -128.193236 kcal Electronic energy + Delta-G solvation = -22330.649936 eV Core-core repulsion = 18886.120045 eV Total energy + Delta-G solvation = -3444.529891 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43903 -38.37791 -38.17838 -37.27778 -36.86584 -34.50913 -34.15931 -30.28151 -29.35755 -26.86933 -26.76876 -26.43325 -23.84628 -23.26993 -20.97205 -20.18425 -19.17204 -18.62196 -18.20152 -17.65521 -17.21607 -16.78065 -16.70414 -16.11424 -15.90772 -15.50975 -15.21280 -14.63997 -14.42311 -14.31322 -14.07477 -13.62302 -13.49248 -13.30981 -13.22093 -13.14098 -13.09097 -12.99718 -12.93648 -12.33884 -12.28217 -12.23268 -12.02003 -11.75344 -11.69197 -11.57384 -11.27575 -10.77188 -10.51475 -10.33309 -9.78280 -8.28525 -6.34520 -0.35129 1.36806 1.41532 1.50891 2.03287 2.36149 2.63771 2.88390 3.05100 3.42359 3.58405 3.68246 3.86258 3.96947 3.98059 4.23867 4.46257 4.47605 4.55217 4.64950 4.66348 4.69786 4.76143 4.83761 4.87195 4.89845 4.93337 4.98323 5.07859 5.17155 5.18828 5.33036 5.49098 5.60932 5.71290 6.14993 6.31109 6.32155 6.68536 7.28457 8.89393 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.004629 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.431168 B = 6047.605332 C = 7039.700615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.071 3.929 4 C -0.102 4.102 5 H 0.105 0.895 6 C -0.146 4.146 7 C 0.112 3.888 8 H 0.114 0.886 9 N -1.102 6.102 10 S 2.794 3.206 11 O -1.011 7.011 12 O -1.013 7.013 13 N -0.998 5.998 14 C 0.097 3.903 15 C 0.236 3.764 16 C -0.545 4.545 17 H 0.025 0.975 18 C 0.004 3.996 19 N -0.950 5.950 20 Si 0.948 3.052 21 H -0.253 1.253 22 H -0.239 1.239 23 H -0.285 1.285 24 C -0.124 4.124 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.424 0.576 33 H 0.034 0.966 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.268 0.732 39 H 0.089 0.911 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.469 -3.663 17.518 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.006 4.006 4 C -0.121 4.121 5 H 0.123 0.877 6 C -0.185 4.185 7 C 0.005 3.995 8 H 0.132 0.868 9 N -0.864 5.864 10 S 2.802 3.198 11 O -0.994 6.994 12 O -0.997 6.997 13 N -0.839 5.839 14 C -0.048 4.048 15 C 0.111 3.889 16 C -0.585 4.585 17 H 0.043 0.957 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.178 1.178 22 H -0.162 1.162 23 H -0.210 1.210 24 C -0.163 4.163 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.260 0.740 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.454 -3.293 17.537 26.398 hybrid contribution -0.447 0.335 -1.089 1.224 sum -19.901 -2.958 16.448 25.987 Atomic orbital electron populations 1.22885 0.79929 1.03561 1.00678 1.87857 1.21045 1.29033 1.95571 1.22599 0.92699 0.84314 1.00956 1.22351 0.93173 0.98641 0.97955 0.87710 1.23630 0.97142 1.00423 0.97331 1.22573 0.97369 0.89830 0.89736 0.86792 1.55742 1.32813 1.42171 1.55654 1.01327 0.74025 0.72425 0.71984 1.93517 1.65125 1.87021 1.53780 1.93574 1.86714 1.55805 1.63616 1.57323 1.80892 1.26819 1.18880 1.21511 0.99235 0.87076 0.96963 1.19224 0.94458 0.98415 0.76789 1.21746 0.94933 1.49638 0.92141 0.95673 1.25988 1.01130 0.94011 0.98177 1.70084 1.30679 1.51430 1.06861 0.85715 0.79407 0.79688 0.78200 1.17761 1.16222 1.21026 1.23325 0.96173 0.97166 0.99661 0.93076 0.93596 0.88968 0.91912 0.92680 0.89244 0.90584 0.73985 0.94742 0.89586 0.89303 0.94533 0.92639 0.92358 0.89265 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.25 10.70 -148.98 -1.59 -8.85 16 3 C 0.07 0.97 5.78 71.98 0.42 1.38 16 4 C -0.10 -1.45 4.01 -10.21 -0.04 -1.50 16 5 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.15 -2.54 7.45 31.18 0.23 -2.31 16 7 C 0.11 2.20 4.44 45.52 0.20 2.40 16 8 H 0.11 2.27 6.91 -2.39 -0.02 2.25 16 9 N -1.10 -27.77 5.85 -167.20 -0.98 -28.75 16 10 S 2.79 106.32 6.03 -56.49 -0.34 105.98 16 11 O -1.01 -41.31 16.72 -128.00 -2.14 -43.46 16 12 O -1.01 -48.32 17.11 -128.00 -2.19 -50.51 16 13 N -1.00 -39.23 3.23 -543.20 -1.75 -40.98 16 14 C 0.10 3.12 10.33 127.77 1.32 4.44 16 15 C 0.24 10.80 4.19 85.63 0.36 11.16 16 16 C -0.55 -32.11 9.94 25.60 0.25 -31.85 16 17 H 0.02 1.68 8.06 -2.91 -0.02 1.65 16 18 C 0.00 0.26 5.47 84.65 0.46 0.72 16 19 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 20 Si 0.95 42.85 27.47 68.60 1.88 44.73 16 21 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 C -0.12 -1.72 7.42 31.12 0.23 -1.48 16 25 H 0.05 0.45 8.14 -2.39 -0.02 0.44 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.70 7.85 -2.39 -0.02 0.69 16 30 H 0.09 1.56 7.90 -2.38 -0.02 1.54 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.42 8.89 8.93 -96.75 -0.86 8.03 16 33 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.09 2.14 6.94 -2.39 -0.02 2.12 16 35 H 0.09 2.45 7.94 -2.39 -0.02 2.43 16 36 H 0.04 1.66 6.67 -2.39 -0.02 1.64 16 37 H 0.06 2.26 7.39 -2.38 -0.02 2.24 16 38 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -80.55 341.99 -2.02 -82.57 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.11 Total: 15.26 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 4.68 Total: -15.49 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -2.43 Total: -130.24 kcal Atomic # 8 Polarization: -96.89 SS G_CDS: -5.92 Total: -102.81 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.73 kcal Atomic # 16 Polarization: 106.32 SS G_CDS: -0.34 Total: 105.98 kcal Total: -80.55 -2.02 -82.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882697166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.620 kcal (2) G-P(sol) polarization free energy of solvation -80.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds