Wall clock time and date at job start Fri Apr 10 2020 17:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21305 * 119.99734 * 2 1 4 4 C 1.46773 * 119.99973 * 180.02562 * 2 1 3 5 5 C 1.37981 * 125.91444 * 180.25992 * 4 2 1 6 6 N 1.34709 * 106.65094 * 180.18002 * 5 4 2 7 7 C 1.46499 * 126.52346 * 179.88450 * 6 5 4 8 8 C 1.53504 * 114.20382 * 84.71357 * 7 6 5 9 9 N 1.47066 * 88.04678 * 220.37387 * 8 7 6 10 10 C 1.34779 * 136.05571 * 207.12426 * 9 8 7 11 11 O 1.21283 * 120.00229 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99936 * 180.02562 * 10 9 8 13 13 C 1.53000 * 109.47256 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47135 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00059 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99785 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00047 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99632 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47371 * 60.00250 * 18 16 14 20 20 H 1.48502 * 109.46842 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47440 * 300.00053 * 18 16 14 22 22 C 1.47064 * 87.88659 * 27.09306 * 9 8 7 23 23 N 1.40161 * 106.95408 * 359.62742 * 6 5 4 24 24 N 1.28712 * 108.67865 * 0.23604 * 23 6 5 25 25 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47015 * 299.99950 * 1 2 3 27 27 H 1.09000 * 109.47344 * 60.00292 * 1 2 3 28 28 H 1.08006 * 126.67694 * 0.04934 * 5 4 2 29 29 H 1.09002 * 113.41645 * 217.91177 * 7 6 5 30 30 H 1.09002 * 113.46865 * 105.56483 * 8 7 6 31 31 H 1.08999 * 113.46581 * 335.18259 * 8 7 6 32 32 H 1.09005 * 109.46761 * 299.99821 * 12 10 9 33 33 H 1.08999 * 109.47513 * 59.99746 * 12 10 9 34 34 H 1.09000 * 109.46682 * 299.99812 * 13 12 10 35 35 H 1.08999 * 109.47050 * 59.99483 * 13 12 10 36 36 H 0.96995 * 119.99702 * 179.97438 * 17 16 14 37 37 H 1.08999 * 113.47096 * 87.65665 * 22 9 8 38 38 H 1.09005 * 113.46966 * 218.04058 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2711 -0.0006 5 6 3.6133 -1.4133 0.0044 6 7 3.8643 -2.7368 -0.0022 7 6 5.1834 -3.3741 -0.0027 8 6 5.8030 -3.5393 1.3920 9 7 7.0977 -3.1597 0.8066 10 6 8.3949 -3.4013 1.0809 11 8 8.6952 -4.0965 2.0283 12 6 9.4724 -2.8077 0.2104 13 6 10.8448 -3.2330 0.7363 14 6 11.9222 -2.6399 -0.1346 15 1 11.6549 -2.0212 -0.9784 16 6 13.2494 -2.8863 0.1466 17 7 13.5750 -3.6394 1.1745 18 14 14.5849 -2.1505 -0.9324 19 1 14.4819 -0.6693 -0.9069 20 1 15.9170 -2.5624 -0.4214 21 1 14.4177 -2.6344 -2.3263 22 6 6.3538 -2.4010 -0.2102 23 7 2.6232 -3.3881 -0.0026 24 7 1.6916 -2.5000 -0.0015 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.3443 -0.6182 0.0102 29 1 5.2316 -4.2697 -0.6221 30 1 5.7770 -4.5651 1.7598 31 1 5.4289 -2.8207 2.1211 32 1 9.3491 -3.1623 -0.8129 33 1 9.3973 -1.7205 0.2298 34 1 10.9677 -2.8780 1.7595 35 1 10.9202 -4.3202 0.7173 36 1 14.5086 -3.8130 1.3720 37 1 6.1259 -1.3787 0.0914 38 1 6.7967 -2.4581 -1.2046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889544955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:44 Heat of formation + Delta-G solvation = 35.903375 kcal Electronic energy + Delta-G solvation = -21967.866263 eV Core-core repulsion = 18427.300935 eV Total energy + Delta-G solvation = -3540.565328 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.36323 -41.52357 -40.03697 -39.27525 -35.59492 -34.91335 -33.10278 -32.39447 -30.96460 -30.06406 -27.82039 -27.14586 -25.35625 -24.48388 -23.34462 -22.05528 -21.01158 -20.01612 -18.97757 -18.62796 -17.76219 -17.30257 -17.01856 -16.63437 -16.45532 -16.39819 -16.12750 -15.78771 -15.54668 -14.89610 -14.54817 -14.40796 -14.14072 -13.91137 -13.66399 -13.31365 -13.15137 -13.06020 -12.99145 -12.78737 -12.59577 -12.52967 -12.32196 -11.94715 -11.68035 -11.40301 -11.34116 -11.00345 -10.90706 -10.56927 -10.37691 -9.98900 -8.18895 -6.33019 -0.06394 0.34465 0.72068 1.42676 1.46693 1.48895 1.54521 1.80392 1.91041 2.42386 2.57551 2.92748 3.14564 3.18366 3.25138 3.63019 3.70200 3.82246 4.12377 4.17543 4.21037 4.31895 4.37033 4.46550 4.47747 4.53766 4.69656 4.70106 4.72328 4.80268 5.04381 5.23722 5.29594 5.48466 5.59805 5.83197 6.14890 6.37740 6.42529 6.85327 6.89085 7.06814 7.37586 8.93491 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.002544 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.864787 B =11003.933121 C =11620.781755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.448 3.552 3 O -0.490 6.490 4 C -0.153 4.153 5 C 0.106 3.894 6 N -0.339 5.339 7 C 0.124 3.876 8 C 0.090 3.910 9 N -0.651 5.651 10 C 0.549 3.451 11 O -0.582 6.582 12 C -0.108 4.108 13 C 0.040 3.960 14 C -0.542 4.542 15 H 0.079 0.921 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.973 3.027 19 H -0.262 1.262 20 H -0.290 1.290 21 H -0.261 1.261 22 C 0.100 3.900 23 N -0.084 5.084 24 N -0.203 5.203 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.235 0.765 29 H 0.167 0.833 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.107 0.893 34 H -0.019 1.019 35 H -0.017 1.017 36 H 0.263 0.737 37 H 0.122 0.878 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.050 7.099 -6.874 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.326 3.674 3 O -0.364 6.364 4 C -0.291 4.291 5 C -0.052 4.052 6 N -0.122 5.122 7 C 0.021 3.979 8 C -0.034 4.034 9 N -0.388 5.388 10 C 0.342 3.658 11 O -0.460 6.460 12 C -0.148 4.148 13 C 0.002 3.998 14 C -0.580 4.580 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.216 1.216 21 H -0.186 1.186 22 C -0.023 4.023 23 N -0.064 5.064 24 N -0.077 5.077 25 H 0.110 0.890 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.251 0.749 29 H 0.185 0.815 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.000 1.000 35 H 0.002 0.998 36 H 0.071 0.929 37 H 0.140 0.860 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.861 5.770 -6.231 27.219 hybrid contribution 1.586 0.568 0.249 1.703 sum -24.275 6.338 -5.981 25.792 Atomic orbital electron populations 1.22134 0.90301 1.06127 1.05998 1.21695 0.92761 0.84056 0.68888 1.90594 1.72965 1.33749 1.39138 1.22726 0.92111 0.94954 1.19265 1.24469 0.98341 0.87740 0.94656 1.50361 1.08337 1.05448 1.48028 1.23632 0.75052 0.99738 0.99464 1.23472 0.80527 1.03594 0.95783 1.49300 1.03305 1.52715 1.33484 1.21016 0.81396 0.79058 0.84366 1.90703 1.81757 1.40966 1.32616 1.21600 0.91534 1.02243 0.99398 1.18724 0.91356 0.94843 0.94876 1.21663 0.91566 1.31331 1.13434 0.90320 1.26138 1.02040 0.95578 0.96732 1.70166 1.18399 1.39376 1.29839 0.85382 0.76939 0.79123 0.78865 1.18671 1.21606 1.18589 1.23704 0.86102 0.96648 0.95800 1.82034 0.83901 1.17045 1.23438 1.74650 1.24611 0.99155 1.09285 0.88971 0.87378 0.87196 0.74929 0.81520 0.89480 0.88387 0.87180 0.87464 1.00011 0.99834 0.92876 0.86038 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.74 10.32 71.24 0.74 -1.00 16 2 C 0.45 6.78 7.24 27.92 0.20 6.98 16 3 O -0.49 -9.87 17.62 -3.11 -0.05 -9.93 16 4 C -0.15 -2.45 6.96 40.89 0.28 -2.16 16 5 C 0.11 1.28 10.56 84.19 0.89 2.16 16 6 N -0.34 -4.61 3.84 -324.52 -1.25 -5.86 16 7 C 0.12 1.40 5.44 45.49 0.25 1.65 16 8 C 0.09 1.57 8.42 83.18 0.70 2.27 16 9 N -0.65 -14.67 3.69 -857.68 -3.17 -17.84 16 10 C 0.55 19.56 8.08 87.66 0.71 20.26 16 11 O -0.58 -27.59 16.76 -3.04 -0.05 -27.64 16 12 C -0.11 -3.96 5.47 29.85 0.16 -3.79 16 13 C 0.04 2.12 4.26 29.85 0.13 2.24 16 14 C -0.54 -29.64 9.11 25.60 0.23 -29.40 16 15 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 16 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 17 N -0.94 -58.47 13.29 21.45 0.28 -58.18 16 18 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 22 C 0.10 1.06 7.78 83.22 0.65 1.71 16 23 N -0.08 -1.63 13.76 37.02 0.51 -1.12 16 24 N -0.20 -3.88 11.73 -49.62 -0.58 -4.47 16 25 H 0.09 0.85 7.44 -2.39 -0.02 0.83 16 26 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.23 1.28 6.82 -2.91 -0.02 1.26 16 29 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 33 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 34 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 35 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 36 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.12 0.70 6.44 -2.39 -0.02 0.69 16 38 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -82.90 338.72 4.20 -78.70 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: 1.08 Total: 0.29 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.40 Total: 0.97 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -4.20 Total: -87.47 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.11 Total: -37.57 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -82.90 4.20 -78.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889544955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.601 kcal (2) G-P(sol) polarization free energy of solvation -82.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds