Wall clock time and date at job start Fri Apr 10 2020 17:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33355 * 117.94469 * 2 1 4 4 O 1.21284 * 118.24530 * 357.78617 * 3 2 1 5 5 C 1.50170 * 123.51160 * 178.05755 * 3 2 1 6 6 C 1.52889 * 109.98322 * 17.12113 * 5 3 2 7 7 C 1.53347 * 108.58733 * 311.48399 * 6 5 3 8 8 C 1.45751 * 117.94947 * 180.02562 * 2 1 3 9 9 H 1.08997 * 109.30389 * 78.76108 * 8 2 1 10 10 C 1.50697 * 109.29995 * 319.17582 * 8 2 1 11 11 O 1.21299 * 120.00200 * 331.97857 * 10 8 2 12 12 N 1.34777 * 120.00036 * 151.97430 * 10 8 2 13 13 C 1.40591 * 120.00287 * 179.97438 * 12 10 8 14 14 C 1.40653 * 126.08086 * 359.69964 * 13 12 10 15 15 N 1.30908 * 108.38676 * 179.80996 * 14 13 12 16 16 N 1.40059 * 108.40616 * 0.44338 * 15 14 13 17 17 C 1.37329 * 126.07098 * 179.73750 * 16 15 14 18 18 H 1.08000 * 120.00254 * 179.97438 * 17 16 15 19 19 C 1.38991 * 119.99768 * 359.97256 * 17 16 15 20 20 N 1.31297 * 119.99710 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00002 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47034 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46683 * 120.00155 * 21 19 17 24 24 H 1.48492 * 109.47159 * 239.99908 * 21 19 17 25 25 C 1.35678 * 126.08523 * 180.02562 * 13 12 10 26 26 H 1.08999 * 109.47801 * 35.23293 * 1 2 3 27 27 H 1.09008 * 109.46847 * 155.23437 * 1 2 3 28 28 H 1.09004 * 109.47009 * 275.22995 * 1 2 3 29 29 H 1.09002 * 109.39969 * 137.43154 * 5 3 2 30 30 H 1.08994 * 109.40577 * 257.17921 * 5 3 2 31 31 H 1.09002 * 109.74550 * 191.60643 * 6 5 3 32 32 H 1.08999 * 109.44393 * 71.17474 * 6 5 3 33 33 H 1.09003 * 109.59942 * 307.58772 * 7 6 5 34 34 H 1.09004 * 109.73449 * 187.18418 * 7 6 5 35 35 H 0.96996 * 119.99987 * 0.02562 * 12 10 8 36 36 H 1.08003 * 125.80619 * 359.97438 * 14 13 12 37 37 H 0.97003 * 119.99530 * 179.97438 * 20 19 17 38 38 H 1.07998 * 126.24797 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0900 1.1781 0.0000 4 8 1.4158 2.1854 -0.0413 5 6 3.5839 1.3241 0.0424 6 6 4.2492 0.0017 -0.3398 7 6 3.5949 -1.1260 0.4674 8 6 2.1482 -1.2875 -0.0006 9 1 2.1399 -1.6993 -1.0097 10 6 1.4309 -2.2323 0.9288 11 8 0.8121 -1.7972 1.8770 12 7 1.4768 -3.5608 0.7064 13 6 0.8081 -4.4424 1.5737 14 6 0.0620 -4.0799 2.7096 15 7 -0.4113 -5.1703 3.2580 16 7 0.0203 -6.2682 2.5030 17 6 -0.2633 -7.5873 2.7592 18 1 0.1221 -8.3587 2.1090 19 6 -1.0462 -7.9296 3.8555 20 7 -1.5151 -6.9917 4.6457 21 14 -1.4325 -9.7237 4.2036 22 1 -0.7909 -10.5774 3.1718 23 1 -0.9103 -10.0913 5.5442 24 1 -2.9029 -9.9286 4.1719 25 6 0.7727 -5.7945 1.4674 26 1 -0.3635 0.8394 -0.5928 27 1 -0.3633 -0.9332 -0.4305 28 1 -0.3633 0.0937 1.0234 29 1 3.8917 2.1017 -0.6566 30 1 3.8921 1.6022 1.0502 31 1 5.3143 0.0459 -0.1121 32 1 4.1086 -0.1806 -1.4053 33 1 3.6102 -0.8731 1.5276 34 1 4.1378 -2.0573 0.3057 35 1 1.9718 -3.9088 -0.0517 36 1 -0.0958 -3.0730 3.0670 37 1 -2.0618 -7.2306 5.4105 38 1 1.2517 -6.3877 0.7026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906463402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:46 Heat of formation + Delta-G solvation = 18.110659 kcal Electronic energy + Delta-G solvation = -23222.718597 eV Core-core repulsion = 19681.381719 eV Total energy + Delta-G solvation = -3541.336878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96682 -39.77836 -38.59794 -36.26550 -34.51737 -33.97533 -33.22217 -30.54930 -30.07633 -27.81205 -27.10145 -25.48082 -24.48592 -22.44943 -21.29414 -20.59555 -19.51428 -18.72776 -17.70028 -17.07035 -16.56741 -16.47052 -15.53522 -15.36103 -15.16507 -14.73093 -14.34254 -14.10970 -13.92541 -13.69961 -13.41650 -13.18995 -12.93972 -12.47453 -12.16413 -12.11790 -11.74797 -11.68433 -11.47419 -11.30800 -11.28550 -11.18328 -10.98429 -10.54221 -10.23873 -9.92550 -9.42609 -9.23034 -8.87346 -8.60786 -8.11830 -6.77946 -6.60350 -4.28177 2.52972 2.58671 2.90000 3.00341 3.02985 3.08395 3.46568 3.61204 3.81913 4.30228 4.33570 4.45448 4.50430 4.53784 4.72096 4.93195 4.97730 5.09107 5.17333 5.38391 5.44607 5.49660 5.56707 5.63131 5.73163 5.89365 6.10146 6.17700 6.25716 6.37754 6.81675 6.89284 7.02595 7.17761 7.36310 7.80615 8.04341 8.11354 8.20734 8.54941 8.74107 9.32175 9.61317 10.35558 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.042426 B = 0.003195 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.816727 B = 8761.573438 C = 9107.215089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.584 5.584 3 C 0.518 3.482 4 O -0.556 6.556 5 C -0.135 4.135 6 C -0.120 4.120 7 C -0.128 4.128 8 C 0.132 3.868 9 H 0.093 0.907 10 C 0.486 3.514 11 O -0.521 6.521 12 N -0.618 5.618 13 C -0.063 4.063 14 C -0.031 4.031 15 N -0.260 5.260 16 N -0.141 5.141 17 C -0.323 4.323 18 H 0.117 0.883 19 C 0.046 3.954 20 N -0.769 5.769 21 Si 0.935 3.065 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.083 4.083 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.397 0.603 36 H 0.175 0.825 37 H 0.275 0.725 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.924 7.015 -11.078 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.316 5.316 3 C 0.307 3.693 4 O -0.435 6.435 5 C -0.175 4.175 6 C -0.158 4.158 7 C -0.166 4.166 8 C 0.024 3.976 9 H 0.111 0.889 10 C 0.270 3.730 11 O -0.396 6.396 12 N -0.260 5.260 13 C -0.169 4.169 14 C -0.207 4.207 15 N -0.091 5.091 16 N 0.091 4.909 17 C -0.456 4.456 18 H 0.135 0.865 19 C -0.171 4.171 20 N -0.395 5.395 21 Si 0.759 3.241 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.234 4.234 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.192 0.808 37 H 0.085 0.915 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.284 7.406 -9.246 15.051 hybrid contribution 0.603 -0.870 -0.920 1.403 sum 9.887 6.536 -10.166 15.615 Atomic orbital electron populations 1.21733 0.78681 1.02161 1.03379 1.46905 1.07880 1.04596 1.72238 1.20091 0.90895 0.82422 0.75903 1.90711 1.66625 1.35438 1.50711 1.21642 0.91149 0.99669 1.05029 1.21625 1.00431 0.93214 1.00539 1.21876 0.92174 1.00752 1.01820 1.20903 0.93172 0.84133 0.99369 0.88949 1.20387 0.83028 0.82633 0.86920 1.90636 1.42431 1.76469 1.30097 1.42472 1.50314 1.04825 1.28418 1.17245 1.11935 0.88208 0.99488 1.24099 1.01855 0.98988 0.95737 1.78273 1.22739 0.90535 1.17602 1.44572 1.26809 1.05701 1.13800 1.19933 1.33569 0.79053 1.13002 0.86526 1.25654 0.95632 1.00495 0.95351 1.70226 1.24959 1.32785 1.11527 0.85756 0.78820 0.80466 0.79071 1.18675 1.19892 1.19887 1.21254 1.09802 0.92591 0.99733 0.90892 0.91499 0.91141 0.88104 0.88150 0.89937 0.90848 0.89901 0.88905 0.76967 0.80825 0.91458 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 8.67 59.85 0.52 1.71 16 2 N -0.58 -7.77 2.95 -176.51 -0.52 -8.29 16 3 C 0.52 7.01 7.47 -11.87 -0.09 6.92 16 4 O -0.56 -9.61 16.27 5.55 0.09 -9.51 16 5 C -0.14 -1.20 6.03 -28.20 -0.17 -1.37 16 6 C -0.12 -0.80 6.02 -26.61 -0.16 -0.96 16 7 C -0.13 -1.11 5.28 -26.60 -0.14 -1.25 16 8 C 0.13 1.48 3.07 -69.53 -0.21 1.26 16 9 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 10 C 0.49 7.65 5.96 -10.99 -0.07 7.59 16 11 O -0.52 -10.47 12.17 5.54 0.07 -10.41 16 12 N -0.62 -9.83 5.47 -10.00 -0.05 -9.88 16 13 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 14 C -0.03 -0.80 10.85 -17.03 -0.18 -0.98 16 15 N -0.26 -7.43 10.40 30.80 0.32 -7.11 16 16 N -0.14 -3.78 3.74 -11.41 -0.04 -3.82 16 17 C -0.32 -8.36 10.25 -14.81 -0.15 -8.52 16 18 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 19 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 20 N -0.77 -21.20 11.81 55.50 0.66 -20.55 16 21 Si 0.94 18.57 29.55 -169.99 -5.02 13.55 16 22 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 C -0.08 -1.86 11.49 -16.39 -0.19 -2.05 16 26 H 0.07 1.01 7.31 -51.93 -0.38 0.63 16 27 H 0.07 0.90 7.54 -51.92 -0.39 0.51 16 28 H 0.07 1.16 7.43 -51.93 -0.39 0.78 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.40 4.59 8.82 -40.82 -0.36 4.23 16 36 H 0.17 4.44 5.92 -52.48 -0.31 4.13 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.15 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -35.21 319.32 -5.97 -41.18 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.75 Total: 8.57 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.52 Total: 1.46 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.36 Total: -49.65 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.16 Total: -19.92 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.21 -5.97 -41.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906463402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.293 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds