Wall clock time and date at job start Fri Apr 10 2020 17:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33355 * 117.94469 * 2 1 4 4 O 1.21284 * 118.24530 * 357.78617 * 3 2 1 5 5 C 1.50170 * 123.51160 * 178.05755 * 3 2 1 6 6 C 1.52889 * 109.98322 * 17.12113 * 5 3 2 7 7 C 1.53347 * 108.58733 * 311.48399 * 6 5 3 8 8 C 1.45751 * 117.94947 * 180.02562 * 2 1 3 9 9 H 1.08997 * 109.30389 * 78.76108 * 8 2 1 10 10 C 1.50697 * 109.29995 * 319.17582 * 8 2 1 11 11 O 1.21299 * 120.00200 * 331.97857 * 10 8 2 12 12 N 1.34777 * 120.00036 * 151.97430 * 10 8 2 13 13 C 1.40591 * 120.00287 * 179.97438 * 12 10 8 14 14 C 1.40653 * 126.08086 * 359.69964 * 13 12 10 15 15 N 1.30908 * 108.38676 * 179.80996 * 14 13 12 16 16 N 1.40059 * 108.40616 * 0.44338 * 15 14 13 17 17 C 1.37329 * 126.07098 * 179.73750 * 16 15 14 18 18 H 1.08000 * 120.00254 * 179.97438 * 17 16 15 19 19 C 1.38991 * 119.99768 * 359.97256 * 17 16 15 20 20 N 1.31297 * 119.99710 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00002 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47034 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46683 * 120.00155 * 21 19 17 24 24 H 1.48492 * 109.47159 * 239.99908 * 21 19 17 25 25 C 1.35678 * 126.08523 * 180.02562 * 13 12 10 26 26 H 1.08999 * 109.47801 * 35.23293 * 1 2 3 27 27 H 1.09008 * 109.46847 * 155.23437 * 1 2 3 28 28 H 1.09004 * 109.47009 * 275.22995 * 1 2 3 29 29 H 1.09002 * 109.39969 * 137.43154 * 5 3 2 30 30 H 1.08994 * 109.40577 * 257.17921 * 5 3 2 31 31 H 1.09002 * 109.74550 * 191.60643 * 6 5 3 32 32 H 1.08999 * 109.44393 * 71.17474 * 6 5 3 33 33 H 1.09003 * 109.59942 * 307.58772 * 7 6 5 34 34 H 1.09004 * 109.73449 * 187.18418 * 7 6 5 35 35 H 0.96996 * 119.99987 * 0.02562 * 12 10 8 36 36 H 1.08003 * 125.80619 * 359.97438 * 14 13 12 37 37 H 0.97003 * 119.99530 * 179.97438 * 20 19 17 38 38 H 1.07998 * 126.24797 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0900 1.1781 0.0000 4 8 1.4158 2.1854 -0.0413 5 6 3.5839 1.3241 0.0424 6 6 4.2492 0.0017 -0.3398 7 6 3.5949 -1.1260 0.4674 8 6 2.1482 -1.2875 -0.0006 9 1 2.1399 -1.6993 -1.0097 10 6 1.4309 -2.2323 0.9288 11 8 0.8121 -1.7972 1.8770 12 7 1.4768 -3.5608 0.7064 13 6 0.8081 -4.4424 1.5737 14 6 0.0620 -4.0799 2.7096 15 7 -0.4113 -5.1703 3.2580 16 7 0.0203 -6.2682 2.5030 17 6 -0.2633 -7.5873 2.7592 18 1 0.1221 -8.3587 2.1090 19 6 -1.0462 -7.9296 3.8555 20 7 -1.5151 -6.9917 4.6457 21 14 -1.4325 -9.7237 4.2036 22 1 -0.7909 -10.5774 3.1718 23 1 -0.9103 -10.0913 5.5442 24 1 -2.9029 -9.9286 4.1719 25 6 0.7727 -5.7945 1.4674 26 1 -0.3635 0.8394 -0.5928 27 1 -0.3633 -0.9332 -0.4305 28 1 -0.3633 0.0937 1.0234 29 1 3.8917 2.1017 -0.6566 30 1 3.8921 1.6022 1.0502 31 1 5.3143 0.0459 -0.1121 32 1 4.1086 -0.1806 -1.4053 33 1 3.6102 -0.8731 1.5276 34 1 4.1378 -2.0573 0.3057 35 1 1.9718 -3.9088 -0.0517 36 1 -0.0958 -3.0730 3.0670 37 1 -2.0618 -7.2306 5.4105 38 1 1.2517 -6.3877 0.7026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906463402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:46 Heat of formation + Delta-G solvation = -8.265599 kcal Electronic energy + Delta-G solvation = -23223.862357 eV Core-core repulsion = 19681.381719 eV Total energy + Delta-G solvation = -3542.480638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.12944 -41.42212 -40.03446 -37.33190 -35.98640 -35.10387 -34.85066 -32.28918 -31.31637 -29.44664 -28.15836 -27.00199 -25.82583 -23.24051 -22.94535 -22.18124 -21.21472 -19.66081 -19.36234 -18.37580 -17.64670 -17.50677 -17.40403 -16.70632 -16.44439 -16.01579 -15.66015 -15.30700 -15.15905 -14.96610 -14.82544 -14.48340 -14.37858 -13.58978 -13.48522 -13.30917 -13.26328 -12.98157 -12.92777 -12.81828 -12.54447 -12.02483 -11.95459 -11.84037 -11.79167 -11.13318 -11.02511 -10.80556 -10.60934 -10.09757 -9.78643 -8.52171 -8.46429 -6.23756 1.17515 1.40321 1.43320 1.51314 1.59630 1.81062 1.91777 2.10042 2.30573 2.52412 2.89932 3.10193 3.49133 3.64807 3.74153 3.88032 4.08287 4.21607 4.29123 4.45545 4.53593 4.58133 4.61916 4.80971 4.85280 4.87585 4.97971 5.01495 5.04216 5.09804 5.25214 5.30723 5.33539 5.46424 5.97130 6.30336 6.36279 6.73149 6.74958 7.05483 7.37186 7.48372 7.69798 8.53024 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.042426 B = 0.003195 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.816727 B = 8761.573438 C = 9107.215089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.588 5.588 3 C 0.509 3.491 4 O -0.603 6.603 5 C -0.131 4.131 6 C -0.108 4.108 7 C -0.127 4.127 8 C 0.139 3.861 9 H 0.138 0.862 10 C 0.486 3.514 11 O -0.568 6.568 12 N -0.606 5.606 13 C -0.043 4.043 14 C -0.059 4.059 15 N -0.313 5.313 16 N -0.170 5.170 17 C -0.353 4.353 18 H 0.143 0.857 19 C -0.008 4.008 20 N -0.826 5.826 21 Si 1.018 2.982 22 H -0.239 1.239 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.075 4.075 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.424 0.576 36 H 0.163 0.837 37 H 0.275 0.725 38 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.881 5.565 -13.952 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.319 5.319 3 C 0.300 3.700 4 O -0.485 6.485 5 C -0.171 4.171 6 C -0.145 4.145 7 C -0.165 4.165 8 C 0.032 3.968 9 H 0.155 0.845 10 C 0.273 3.727 11 O -0.447 6.447 12 N -0.251 5.251 13 C -0.150 4.150 14 C -0.235 4.235 15 N -0.145 5.145 16 N 0.061 4.939 17 C -0.484 4.484 18 H 0.160 0.840 19 C -0.219 4.219 20 N -0.455 5.455 21 Si 0.837 3.163 22 H -0.161 1.161 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.226 4.226 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.262 0.738 36 H 0.180 0.820 37 H 0.085 0.915 38 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 12.305 5.945 -12.183 18.308 hybrid contribution -0.272 -0.259 -0.093 0.387 sum 12.033 5.686 -12.276 18.106 Atomic orbital electron populations 1.21558 0.80148 1.02537 1.01353 1.47083 1.07355 1.05722 1.71781 1.21070 0.92869 0.81560 0.74489 1.90686 1.68111 1.36944 1.52797 1.21730 0.87421 1.02015 1.05893 1.21638 1.01391 0.90298 1.01205 1.21987 0.90466 1.03274 1.00809 1.21187 0.93583 0.81831 1.00155 0.84458 1.21375 0.81860 0.82848 0.86659 1.90643 1.44329 1.77281 1.32400 1.42366 1.50096 1.04313 1.28369 1.17282 1.10203 0.88935 0.98544 1.24118 1.03530 0.98097 0.97734 1.78166 1.24650 0.91960 1.19762 1.44851 1.28298 1.05718 1.14997 1.20663 1.34250 0.79465 1.14005 0.83975 1.26875 0.94825 1.05533 0.94661 1.70413 1.26724 1.35696 1.12630 0.84542 0.78327 0.74219 0.79164 1.16118 1.19933 1.20007 1.22046 1.08165 0.93162 0.99213 0.90887 0.90691 0.94408 0.86436 0.87765 0.86981 0.88800 0.92223 0.85853 0.73828 0.82049 0.91538 0.79143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.56 8.67 127.77 1.11 3.67 16 2 N -0.59 -14.96 2.95 -831.54 -2.45 -17.41 16 3 C 0.51 13.23 7.47 87.71 0.66 13.88 16 4 O -0.60 -21.08 16.27 -3.04 -0.05 -21.13 16 5 C -0.13 -1.95 6.03 29.65 0.18 -1.77 16 6 C -0.11 -0.88 6.02 30.67 0.18 -0.70 16 7 C -0.13 -1.69 5.28 30.68 0.16 -1.52 16 8 C 0.14 2.68 3.07 44.36 0.14 2.81 16 9 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 10 C 0.49 14.62 5.96 87.66 0.52 15.14 16 11 O -0.57 -23.49 12.17 -3.09 -0.04 -23.53 16 12 N -0.61 -17.73 5.47 -303.93 -1.66 -19.39 16 13 C -0.04 -1.85 6.90 37.73 0.26 -1.59 16 14 C -0.06 -3.16 10.85 85.42 0.93 -2.23 16 15 N -0.31 -18.65 10.40 -56.46 -0.59 -19.24 16 16 N -0.17 -9.15 3.74 -190.01 -0.71 -9.86 16 17 C -0.35 -18.23 10.25 84.01 0.86 -17.37 16 18 H 0.14 6.29 7.83 -2.91 -0.02 6.27 16 19 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 20 N -0.83 -47.58 11.81 21.66 0.26 -47.32 16 21 Si 1.02 38.03 29.55 68.60 2.03 40.06 16 22 H -0.24 -7.86 7.11 99.48 0.71 -7.15 16 23 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 24 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 25 C -0.08 -3.27 11.49 83.37 0.96 -2.31 16 26 H 0.07 2.10 7.31 -2.39 -0.02 2.09 16 27 H 0.07 2.01 7.54 -2.38 -0.02 2.00 16 28 H 0.04 1.34 7.43 -2.38 -0.02 1.32 16 29 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.09 0.48 8.13 -2.39 -0.02 0.46 16 33 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 34 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.42 7.85 8.82 -92.71 -0.82 7.03 16 36 H 0.16 8.82 5.92 -2.91 -0.02 8.81 16 37 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 38 H 0.19 6.25 8.06 -2.91 -0.02 6.22 16 Total: -1.00 -84.49 319.32 3.49 -81.00 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.28 Total: 28.74 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 6.42 Total: 8.08 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -5.15 Total: -113.23 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.09 Total: -44.66 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -84.49 3.49 -81.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906463402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.739 kcal (2) G-P(sol) polarization free energy of solvation -84.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds